Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0028404

Physical Location & Seq

Genomic Coordinates Forward (+)

42954224 .. 42956622

Gene Structure 2399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1356200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGTTTCTGGGTATGCTAATTGCGGAAAACCTGATAAGGCTGTGGGATTGTACAACCGGATGTTGGAGTCTGAATCGGAGGTGCCGAACGGGTTCATGTACTCTGCGGTGCTTATACCTTGTGGCTTGTTGGGCGACCTGAGAACGGGTAAATTGATCCATGAGAGGATATGCGGCGAGAGATTGGAGCTTGACACTGTTTTGATGAATAACCTTTTGGATATGTACTTCAAATGTGGGAGTTTGATTGATGCTAGGAGAGTTTTTGATGACATATCGAGTAAAAACACGACTACGTGGCACACTCTGGTTTCGGGTTTTACTGAGGCTGGTTTGATGGAAGAGGCAGTGAGTTTGTTTCATCAAATGAAAGAGCCAAGTGTTGTATCTTGGAACAGCATAATTGGTGGTTTTGCAGATAATGGAAGTTCGGCCGCATTTGAATTCGTTTGTATAATGCACCGAGAAGGCCTCATACTGGGCAACAATAATAATGCGTTGGGATTGTTTCAAGGGCTTCCAAAGAAAGACGCCTTAGCTTGGTCTGGTTTGATCATAGAGTGTGCGACAACGGGACGAAGCTGGCTTGCCTTTTCGCTGTTTCGGGATATGGTGTATTTGGGTATCAAAGTGGATCAATCTGTCATTTCGTTTATTCTGAAAGTTTGCTCCAGTTTAACTTCTCTTGGAAGTGGAAAACAGGTTCATGCTTTCTGTGTTAAGAGTGGATATGAATCTGAGGAAGTTGTAGTGACATCCCTGTTGGATATATGTCAACAATTTATAATAATTTATATATGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

268

Amino Acids

29.33

Weight (kDa)

5.27

Isoelectric Point (pI)

30.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	99 - 125	2e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028404)

Species	Orthologous Gene IDs
malus_domestica	MD15G1356200.v1.1
pyrus_communis	pycom15g31820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	785
AccB1I	GGYRCC	1 cut(s)	82
AciI	CCGC	4 cut(s)	24, 107, 174, 435
AclWI	GGATC	2 cut(s)	151, 642
AcoI	YGGCCR	1 cut(s)	432
AcsI	RAATTY	1 cut(s)	443
AcyI	GRCGYC	1 cut(s)	531
AfaI	GTAC	3 cut(s)	53, 101, 227
AfiI	CCNNNNNNNGG	4 cut(s)	64, 145, 478, 540
AgsI	TTSAA	3 cut(s)	232, 443, 512
AjuI	GAANNNNNNNTTGG	2 cut(s)	200, 232
AloI	GAACNNNNNNTCC	2 cut(s)	687, 719
AluBI	AGCT	3 cut(s)	190, 539, 582
AluI	AGCT	3 cut(s)	190, 539, 582
AlwI	GGATC	2 cut(s)	151, 642
AoxI	GGCC	2 cut(s)	432, 469
ApoI	RAATTY	1 cut(s)	443
Asp700I	GAANNNNTTC	1 cut(s)	92
BanI	GGYRCC	1 cut(s)	82
BarI	GAAGNNNNNNTAC	2 cut(s)	459, 491
BccI	CCATC	1 cut(s)	331
BclI	TGATCA	1 cut(s)	552
BfaI	CTAG	1 cut(s)	255
BisI	GCNGC	2 cut(s)	175, 435
BlsI	GCNGC	2 cut(s)	176, 436
BmiI	GGNNCC	1 cut(s)	84
BmrI	ACTGGG	1 cut(s)	488
BmsI	GCATC	1 cut(s)	241
BmuI	ACTGGG	1 cut(s)	488
BplI	GAGNNNNNCTC	2 cut(s)	456, 488
BpmI	CTGGAG	1 cut(s)	655
Bpu10I	CCTNAGC	1 cut(s)	535
BsaAI	YACGTR	1 cut(s)	297
BsaBI	GATNNNNATC	1 cut(s)	733
BsaHI	GRCGYC	1 cut(s)	531
BsaWI	WCCGGW	1 cut(s)	57
Bsc4I	CCNNNNNNNGG	4 cut(s)	64, 145, 478, 540
Bse1I	ACTGG	2 cut(s)	483, 672
Bse8I	GATNNNNATC	1 cut(s)	733
BseGI	GGATG	2 cut(s)	66, 755
BseJI	GATNNNNATC	1 cut(s)	733
BseLI	CCNNNNNNNGG	4 cut(s)	64, 145, 478, 540
BseMII	CTCAG	3 cut(s)	131, 315, 729
BseNI	ACTGG	2 cut(s)	483, 672
BseX3I	CGGCCG	1 cut(s)	432
Bsh1285I	CGRYCG	1 cut(s)	435
BshFI	GGCC	2 cut(s)	434, 471
BshNI	GGYRCC	1 cut(s)	82
BsiEI	CGRYCG	1 cut(s)	435
BsiSI	CCGG	1 cut(s)	58
BslFI	GGGAC	1 cut(s)	588
BslI	CCNNNNNNNGG	4 cut(s)	64, 145, 478, 540
BsmFI	GGGAC	1 cut(s)	588
BsnI	GGCC	2 cut(s)	434, 471
Bsp1407I	TGTACA	1 cut(s)	51
Bsp143I	GATC	3 cut(s)	156, 552, 634
BspACI	CCGC	4 cut(s)	24, 107, 174, 435
BspANI	GGCC	2 cut(s)	434, 471
BspCNI	CTCAG	3 cut(s)	132, 316, 730
BspLI	GGNNCC	1 cut(s)	84
BspPI	GGATC	2 cut(s)	151, 642
BspT107I	GGYRCC	1 cut(s)	82
BsrGI	TGTACA	1 cut(s)	51
BsrI	ACTGG	2 cut(s)	483, 672
BssMI	GATC	3 cut(s)	156, 552, 634
BssNI	GRCGYC	1 cut(s)	531
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	1 cut(s)	336
BstACI	GRCGYC	1 cut(s)	531
BstAUI	TGTACA	1 cut(s)	51
BstBAI	YACGTR	1 cut(s)	297
BstC8I	GCNNGC	2 cut(s)	584, 588
BstDEI	CTNAG	4 cut(s)	140, 324, 535, 738
BstF5I	GGATG	2 cut(s)	66, 755
BstKTI	GATC	3 cut(s)	159, 555, 637
BstMBI	GATC	3 cut(s)	156, 552, 634
BstMCI	CGRYCG	1 cut(s)	435
BstMWI	GCNNNNNNNGC	1 cut(s)	132
BstZI	CGGCCG	1 cut(s)	432
BsuRI	GGCC	2 cut(s)	434, 471
BtsCI	GGATG	2 cut(s)	66, 755
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	2 cut(s)	195, 354
Cac8I	GCNNGC	2 cut(s)	584, 588
CseI	GACGC	1 cut(s)	539
Csp6I	GTAC	3 cut(s)	52, 100, 226
CviAII	CATG	3 cut(s)	97, 161, 707
CviQI	GTAC	3 cut(s)	52, 100, 226
DdeI	CTNAG	4 cut(s)	140, 324, 535, 738
DpnI	GATC	3 cut(s)	158, 554, 636
DpnII	GATC	3 cut(s)	156, 552, 634
EaeI	YGGCCR	1 cut(s)	432
EagI	CGGCCG	1 cut(s)	432
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
EclXI	CGGCCG	1 cut(s)	432
Eco147I	AGGCCT	1 cut(s)	471
Eco52I	CGGCCG	1 cut(s)	432
EcoRI	GAATTC	1 cut(s)	443
FaeI	CATG	3 cut(s)	100, 164, 710
FaqI	GGGAC	1 cut(s)	588
FatI	CATG	3 cut(s)	96, 160, 706
FbaI	TGATCA	1 cut(s)	552
Fnu4HI	GCNGC	2 cut(s)	175, 435
FokI	GGATG	2 cut(s)	73, 742
Fsp4HI	GCNGC	2 cut(s)	175, 435
FspBI	CTAG	1 cut(s)	255
GluI	GCNGC	2 cut(s)	175, 435
GsuI	CTGGAG	1 cut(s)	655
HaeIII	GGCC	2 cut(s)	434, 471
HapII	CCGG	1 cut(s)	58
HgaI	GACGC	1 cut(s)	539
Hin1I	GRCGYC	1 cut(s)	531
Hin1II	CATG	3 cut(s)	100, 164, 710
HincII	GTYRAC	1 cut(s)	776
HindII	GTYRAC	1 cut(s)	776
HinfI	GANTC	3 cut(s)	68, 74, 734
HpaII	CCGG	1 cut(s)	58
Hpy166II	GTNNAC	1 cut(s)	776
Hpy188I	TCNGA	4 cut(s)	73, 79, 660, 739
Hpy188III	TCNNGA	1 cut(s)	605
Hpy8I	GTNNAC	1 cut(s)	776
HpyAV	CCTTC	1 cut(s)	461
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4IV	ACGT	1 cut(s)	296
HpyCH4V	TGCA	2 cut(s)	416, 460
HpyF10VI	GCNNNNNNNGC	1 cut(s)	132
HpyF3I	CTNAG	4 cut(s)	140, 324, 535, 738
HpySE526I	ACGT	1 cut(s)	296
Hsp92I	GRCGYC	1 cut(s)	531
Hsp92II	CATG	3 cut(s)	100, 164, 710
Ksp22I	TGATCA	1 cut(s)	552
Kzo9I	GATC	3 cut(s)	156, 552, 634
LmnI	GCTCC	2 cut(s)	187, 674
LweI	GCATC	1 cut(s)	241
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	1 cut(s)	296
MaeIII	GTNAC	1 cut(s)	751
MalI	GATC	3 cut(s)	158, 554, 636
MboI	GATC	3 cut(s)	156, 552, 634
MboII	GAAGA	1 cut(s)	353
MluCI	AATT	6 cut(s)	19, 152, 402, 443, 779, 789
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	2 cut(s)	45, 744
MnlI	CCTC	6 cut(s)	73, 159, 319, 337, 482, 733
MroXI	GAANNNNTTC	1 cut(s)	92
MseI	TTAA	2 cut(s)	677, 720
MspI	CCGG	1 cut(s)	58
MwoI	GCNNNNNNNGC	1 cut(s)	132
NdeII	GATC	3 cut(s)	156, 552, 634
NlaIII	CATG	3 cut(s)	100, 164, 710
NlaIV	GGNNCC	1 cut(s)	84
NmuCI	GTSAC	1 cut(s)	751
PceI	AGGCCT	1 cut(s)	471
PcsI	WCGNNNNNNNCGW	1 cut(s)	83
PdmI	GAANNNNTTC	1 cut(s)	92
PfeI	GAWTC	2 cut(s)	74, 734
PkrI	GCNGC	2 cut(s)	176, 436
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
Ppu21I	YACGTR	1 cut(s)	297
PsiI	TTATAA	1 cut(s)	785
PspN4I	GGNNCC	1 cut(s)	84
RsaI	GTAC	3 cut(s)	53, 101, 227
RsaNI	GTAC	3 cut(s)	52, 100, 226
SaqAI	TTAA	2 cut(s)	677, 720
SatI	GCNGC	2 cut(s)	175, 435
Sau3AI	GATC	3 cut(s)	156, 552, 634
SchI	GAGTC	1 cut(s)	77
SfaNI	GCATC	1 cut(s)	241
Sse9I	AATT	6 cut(s)	19, 152, 402, 443, 779, 789
SseBI	AGGCCT	1 cut(s)	471
SsiI	CCGC	4 cut(s)	24, 107, 174, 435
SspMI	CTAG	1 cut(s)	255
StuI	AGGCCT	1 cut(s)	471
TaaI	ACNGT	1 cut(s)	199
TaiI	ACGT	1 cut(s)	299
TaqI	TCGA	1 cut(s)	278
TasI	AATT	6 cut(s)	19, 152, 402, 443, 779, 789
TatI	WGTACW	3 cut(s)	51, 99, 225
TauI	GCSGC	2 cut(s)	177, 437
TfiI	GAWTC	2 cut(s)	74, 734
Tru1I	TTAA	2 cut(s)	677, 720
Tru9I	TTAA	2 cut(s)	677, 720
TscAI	CASTG	2 cut(s)	202, 354
TseFI	GTSAC	1 cut(s)	751
Tsp45I	GTSAC	1 cut(s)	751
TspDTI	ATGAA	6 cut(s)	85, 221, 350, 383, 695, 747
TspRI	CASTG	2 cut(s)	202, 354
XapI	RAATTY	1 cut(s)	443
XmnI	GAANNNNTTC	1 cut(s)	92
XspI	CTAG	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.