Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0028404

Physical Location & Seq

Genomic Coordinates Forward (+)

30592570 .. 30593256

Gene Structure 687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g31820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGCCTGAGAGGGACGTTGTGACATGGACCACGATGGTTTCTGGGTATACTAATTGCGGAAAACCTGATAAGGCTGTGGGATTGTACAACCGGATGTTGGAGTCTGAATCGGAGATGCCGAACGGGTTCTTGTACTCTGCGGTGCTCAAACCTTGTGGCTTGTTGGGCGACCTGAGAACGGGTAAATTGATCCTTGAGAGGATATGTGGCGAGAGATTGGAGTTTGACACTGTTTTGATGAATACCCTTTTGGATATGTACTTCAAATGTCGGAGTTTGATTGATGCTAGGAGAGTTTTCGATGACATATCGAGTAAAAACACGACTACGTGGCGCGCTCTGGTTTCGGGTTTTACTGAGGCTGGTTTGATGGAAGAGGCAGTGAGTTTGTTTCATCAAATGAAAGAGCCGAGTGTTGTATCTTGGAACAGCATAATTGCTGGTTTTGCAGATAATGGAAGTTCGCGCGCATTTGAATTCGTTTGTATAATGCATGGAGAAGGCCTCAAGTTAGATGGATTTACTTTCCCGTGTGCACTTGGTTGCAATGAATTGACTGAAGCTGTAGAACTGTTCAGCATTCATGGTGCTATGCTTCCTGTTTGCGCTCTAAATTCGCCATGCGCCTCCCGGGCATGCTGGGAATTTCAAACAAGAAACTGGTGGGTGCGAGCATGTCGCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0097159 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

229

Amino Acids

25.57

Weight (kDa)

5.32

Isoelectric Point (pI)

32.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	4 - 49	1e-07	PPR repeat family
PPR_1	PF12854	4 - 32	8.9e-06	PPR repeat
PPR	PF01535	7 - 35	3.3e-08	PPR repeat
PPR	PF01535	110 - 136	3.8e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028404)

Species	Orthologous Gene IDs
malus_domestica	MD15G1356200.v1.1
pyrus_communis	pycom15g31820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	47
AccII	CGCG	3 cut(s)	336, 466, 468
AciI	CCGC	2 cut(s)	57, 140
AclWI	GGATC	1 cut(s)	184
AcsI	RAATTY	3 cut(s)	476, 613, 644
AcuI	CTGAAG	1 cut(s)	579
AfaI	GTAC	3 cut(s)	86, 134, 260
AfiI	CCNNNNNNNGG	2 cut(s)	97, 178
AgsI	TTSAA	3 cut(s)	265, 476, 650
AjuI	GAANNNNNNNTTGG	2 cut(s)	233, 265
AluBI	AGCT	1 cut(s)	563
AluI	AGCT	1 cut(s)	563
Alw21I	GWGCWC	2 cut(s)	147, 538
Alw44I	GTGCAC	1 cut(s)	534
AlwI	GGATC	1 cut(s)	184
Ama87I	CYCGRG	1 cut(s)	630
AoxI	GGCC	1 cut(s)	502
ApaLI	GTGCAC	1 cut(s)	534
ApoI	RAATTY	3 cut(s)	476, 613, 644
Asp700I	GAANNNNTTC	1 cut(s)	125
AspLEI	GCGC	6 cut(s)	336, 338, 468, 470, 608, 626
AspS9I	GGNCC	1 cut(s)	27
AsuC2I	CCSGG	2 cut(s)	631, 632
AvaI	CYCGRG	1 cut(s)	630
AvaII	GGWCC	1 cut(s)	27
BaeGI	GKGCMC	1 cut(s)	538
Bbv12I	GWGCWC	2 cut(s)	147, 538
BccI	CCATC	3 cut(s)	28, 364, 509
BcnI	CCSGG	2 cut(s)	631, 632
BfaI	CTAG	2 cut(s)	288, 685
BfmI	CTRYAG	1 cut(s)	564
BglI	GCCNNNNNGGC	1 cut(s)	632
Bme1390I	CCNGG	2 cut(s)	631, 632
Bme18I	GGWCC	1 cut(s)	27
BmeT110I	CYCGRG	1 cut(s)	630
BmgT120I	GGNCC	1 cut(s)	27
BmrFI	CCNGG	2 cut(s)	631, 632
BmsI	GCATC	2 cut(s)	105, 274
BplI	GAGNNNNNCTC	2 cut(s)	489, 521
BpuEI	CTTGAG	2 cut(s)	215, 491
BpuMI	CCSGG	2 cut(s)	631, 632
BsaAI	YACGTR	1 cut(s)	330
BsaJI	CCNNGG	1 cut(s)	630
BsaWI	WCCGGW	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 178
Bse1I	ACTGG	1 cut(s)	665
Bse3DI	GCAATG	1 cut(s)	553
BseDI	CCNNGG	1 cut(s)	630
BseGI	GGATG	1 cut(s)	99
BseLI	CCNNNNNNNGG	2 cut(s)	97, 178
BseMI	GCAATG	1 cut(s)	553
BseMII	CTCAG	2 cut(s)	164, 348
BseNI	ACTGG	1 cut(s)	665
BsePI	GCGCGC	2 cut(s)	334, 466
BseSI	GKGCMC	1 cut(s)	538
BseYI	CCCAGC	1 cut(s)	639
Bsh1236I	CGCG	3 cut(s)	336, 466, 468
BshFI	GGCC	1 cut(s)	504
BsiHKAI	GWGCWC	2 cut(s)	147, 538
BsiHKCI	CYCGRG	1 cut(s)	630
BsiSI	CCGG	2 cut(s)	91, 631
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	2 cut(s)	97, 178
BsmFI	GGGAC	1 cut(s)	26
BsmI	GAATGC	1 cut(s)	579
BsnI	GGCC	1 cut(s)	504
BsoBI	CYCGRG	1 cut(s)	630
Bsp1286I	GDGCHC	2 cut(s)	147, 538
Bsp1407I	TGTACA	1 cut(s)	84
Bsp143I	GATC	1 cut(s)	189
BspACI	CCGC	2 cut(s)	57, 140
BspANI	GGCC	1 cut(s)	504
BspCNI	CTCAG	2 cut(s)	165, 349
BspFNI	CGCG	3 cut(s)	336, 466, 468
BspPI	GGATC	1 cut(s)	184
BsrDI	GCAATG	1 cut(s)	553
BsrGI	TGTACA	1 cut(s)	84
BsrI	ACTGG	1 cut(s)	665
BssECI	CCNNGG	1 cut(s)	630
BssHII	GCGCGC	2 cut(s)	334, 466
BssMI	GATC	1 cut(s)	189
BssNAI	GTATAC	1 cut(s)	48
Bst1107I	GTATAC	1 cut(s)	48
Bst4CI	ACNGT	2 cut(s)	232, 573
Bst6I	CTCTTC	1 cut(s)	369
BstAUI	TGTACA	1 cut(s)	84
BstBAI	YACGTR	1 cut(s)	330
BstC8I	GCNNGC	4 cut(s)	336, 468, 637, 672
BstDEI	CTNAG	3 cut(s)	6, 173, 357
BstF5I	GGATG	1 cut(s)	99
BstFNI	CGCG	3 cut(s)	336, 466, 468
BstHHI	GCGC	6 cut(s)	336, 338, 468, 470, 608, 626
BstKTI	GATC	1 cut(s)	192
BstMBI	GATC	1 cut(s)	189
BstMWI	GCNNNNNNNGC	3 cut(s)	165, 446, 632
BstNSI	RCATGY	2 cut(s)	639, 678
BstSCI	CCNGG	2 cut(s)	629, 630
BstSFI	CTRYAG	1 cut(s)	564
BstSLI	GKGCMC	1 cut(s)	538
BstUI	CGCG	3 cut(s)	336, 466, 468
BstZ17I	GTATAC	1 cut(s)	48
BsuRI	GGCC	1 cut(s)	504
BtsCI	GGATG	1 cut(s)	99
BtsI	GCAGTG	1 cut(s)	387
BtsIMutI	CAGTG	2 cut(s)	228, 387
Cac8I	GCNNGC	4 cut(s)	336, 468, 637, 672
CfoI	GCGC	6 cut(s)	336, 338, 468, 470, 608, 626
Cfr13I	GGNCC	1 cut(s)	27
Cfr9I	CCCGGG	1 cut(s)	630
Csp6I	GTAC	3 cut(s)	85, 133, 259
CspCI	CAANNNNNGTGG	2 cut(s)	136, 171
CviAII	CATG	6 cut(s)	24, 494, 584, 621, 636, 675
CviJI	RGCY	6 cut(s)	74, 159, 362, 409, 504, 563
CviKI_1	RGCY	6 cut(s)	74, 159, 362, 409, 504, 563
CviQI	GTAC	3 cut(s)	85, 133, 259
DdeI	CTNAG	3 cut(s)	6, 173, 357
DpnI	GATC	1 cut(s)	191
DpnII	GATC	1 cut(s)	189
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
Eco147I	AGGCCT	1 cut(s)	504
Eco47I	GGWCC	1 cut(s)	27
Eco57I	CTGAAG	1 cut(s)	579
Eco88I	CYCGRG	1 cut(s)	630
EcoRI	GAATTC	1 cut(s)	476
EcoT22I	ATGCAT	1 cut(s)	495
FaeI	CATG	6 cut(s)	27, 497, 587, 624, 639, 678
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	6 cut(s)	23, 493, 583, 620, 635, 674
FblI	GTMKAC	1 cut(s)	47
FokI	GGATG	1 cut(s)	106
FspBI	CTAG	2 cut(s)	288, 685
GlaI	GCGC	6 cut(s)	335, 337, 467, 469, 607, 625
GsaI	CCCAGC	1 cut(s)	643
HaeIII	GGCC	1 cut(s)	504
HapII	CCGG	2 cut(s)	91, 631
HhaI	GCGC	6 cut(s)	336, 338, 468, 470, 608, 626
Hin1II	CATG	6 cut(s)	27, 497, 587, 624, 639, 678
Hin6I	GCGC	6 cut(s)	334, 336, 466, 468, 606, 624
HinP1I	GCGC	6 cut(s)	334, 336, 466, 468, 606, 624
HinfI	GANTC	2 cut(s)	101, 107
HpaII	CCGG	2 cut(s)	91, 631
Hpy166II	GTNNAC	2 cut(s)	48, 536
Hpy188I	TCNGA	3 cut(s)	106, 112, 273
Hpy8I	GTNNAC	2 cut(s)	48, 536
HpyAV	CCTTC	1 cut(s)	494
HpyCH4III	ACNGT	2 cut(s)	232, 573
HpyCH4IV	ACGT	2 cut(s)	15, 329
HpyCH4V	TGCA	4 cut(s)	449, 493, 536, 546
HpyF10VI	GCNNNNNNNGC	3 cut(s)	165, 446, 632
HpyF3I	CTNAG	3 cut(s)	6, 173, 357
HpySE526I	ACGT	2 cut(s)	15, 329
Hsp92II	CATG	6 cut(s)	27, 497, 587, 624, 639, 678
HspAI	GCGC	6 cut(s)	334, 336, 466, 468, 606, 624
Kzo9I	GATC	1 cut(s)	189
LweI	GCATC	2 cut(s)	105, 274
MaeI	CTAG	2 cut(s)	288, 685
MaeII	ACGT	2 cut(s)	15, 329
MaeIII	GTNAC	1 cut(s)	19
MalI	GATC	1 cut(s)	191
MboI	GATC	1 cut(s)	189
MboII	GAAGA	1 cut(s)	386
MhlI	GDGCHC	2 cut(s)	147, 538
MluCI	AATT	7 cut(s)	52, 185, 435, 476, 551, 613, 644
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	2 cut(s)	78, 251
MnlI	CCTC	6 cut(s)	3, 192, 352, 370, 515, 637
Mph1103I	ATGCAT	1 cut(s)	495
MroXI	GAANNNNTTC	1 cut(s)	125
MspI	CCGG	2 cut(s)	91, 631
MspR9I	CCNGG	2 cut(s)	631, 632
Mva1269I	GAATGC	1 cut(s)	579
MvnI	CGCG	3 cut(s)	336, 466, 468
MwoI	GCNNNNNNNGC	3 cut(s)	165, 446, 632
NciI	CCSGG	2 cut(s)	631, 632
NdeII	GATC	1 cut(s)	189
NlaIII	CATG	6 cut(s)	27, 497, 587, 624, 639, 678
NmeAIII	GCCGAG	1 cut(s)	435
NmuCI	GTSAC	1 cut(s)	19
NsiI	ATGCAT	1 cut(s)	495
NspI	RCATGY	2 cut(s)	639, 678
PaeI	GCATGC	1 cut(s)	639
PauI	GCGCGC	2 cut(s)	334, 466
PceI	AGGCCT	1 cut(s)	504
PcsI	WCGNNNNNNNCGW	1 cut(s)	116
PctI	GAATGC	1 cut(s)	579
PdmI	GAANNNNTTC	1 cut(s)	125
PfeI	GAWTC	1 cut(s)	107
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
Ppu21I	YACGTR	1 cut(s)	330
PspFI	CCCAGC	1 cut(s)	639
PspPI	GGNCC	1 cut(s)	27
PteI	GCGCGC	2 cut(s)	334, 466
RsaI	GTAC	3 cut(s)	86, 134, 260
RsaNI	GTAC	3 cut(s)	85, 133, 259
Sau3AI	GATC	1 cut(s)	189
Sau96I	GGNCC	1 cut(s)	27
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	2 cut(s)	631, 632
SduI	GDGCHC	2 cut(s)	147, 538
SetI	ASST	6 cut(s)	18, 67, 154, 174, 332, 565
SfaNI	GCATC	2 cut(s)	105, 274
SfcI	CTRYAG	1 cut(s)	564
SinI	GGWCC	1 cut(s)	27
SmaI	CCCGGG	1 cut(s)	632
SmlI	CTYRAG	2 cut(s)	194, 506
SmoI	CTYRAG	2 cut(s)	194, 506
SphI	GCATGC	1 cut(s)	639
Sse9I	AATT	7 cut(s)	52, 185, 435, 476, 551, 613, 644
SseBI	AGGCCT	1 cut(s)	504
SsiI	CCGC	2 cut(s)	57, 140
SspMI	CTAG	2 cut(s)	288, 685
StuI	AGGCCT	1 cut(s)	504
StyD4I	CCNGG	2 cut(s)	629, 630
TaaI	ACNGT	2 cut(s)	232, 573
TaiI	ACGT	2 cut(s)	18, 332
TaqI	TCGA	2 cut(s)	300, 311
TasI	AATT	7 cut(s)	52, 185, 435, 476, 551, 613, 644
TatI	WGTACW	3 cut(s)	84, 132, 258
TfiI	GAWTC	1 cut(s)	107
TscAI	CASTG	2 cut(s)	235, 387
TseFI	GTSAC	1 cut(s)	19
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	5 cut(s)	254, 383, 416, 564, 572
TspMI	CCCGGG	1 cut(s)	630
TspRI	CASTG	2 cut(s)	235, 387
VneI	GTGCAC	1 cut(s)	534
VpaK11BI	GGWCC	1 cut(s)	27
XapI	RAATTY	3 cut(s)	476, 613, 644
XceI	RCATGY	2 cut(s)	639, 678
XmaI	CCCGGG	1 cut(s)	630
XmiI	GTMKAC	1 cut(s)	47
XmnI	GAANNNNTTC	1 cut(s)	125
XspI	CTAG	2 cut(s)	288, 685
Zsp2I	ATGCAT	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.