MD15G1361500.v1.1

glycerol-3-phosphate acyltransferase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
43507474 .. 43509843
2370 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1361500.v1.1.491

Sequence Viewer

Length: 1614 bp
ATGTCTGGAAATCTATGCTCCCTAGAAGCACTTTCCTCCTCTTTCCAAGTCCACAGCAAACCAATCAACATATCATCATCCCCTCCAGAACACAAAGCCAGCCAGCCCCATGCAACCCACTTCAACTTTCAGAAGTTCAAAACCCTTGCTCAAAAGGCAAAAGTGCTTTCAAACAAAACAGTGCTTTTCCACTTTGAGGAAGCACTTTTGAAGTCATCAGCTTCACTGTTTCCTTACTTCATGCTTGTGGCCTTTGAGGCTGGAGGGCTTTTGAGAGCTATGATCTTGTTTCTCTTGAGCCCTCTAGTTTTTTTGGTTGGTGGAGAGTTAGGCCTAAATATTATGGTTTTTTTGTGCTTTTTTGGGATTAGGAAGAATAGGATGAGGGTTGGGACAGCTGTCCTGCCCAAGTTTTTTTTGGAGGATGTTGGGAGTGAAGGGCTTGATGTGGTGATGAGATGTGGGAAAAAAGTGGGAGTGAGTGAGTTGCCTAGGGTTATGGTTGAAGGATTGTTGAAGGATTATGTCGGGGTTGATGTTGTTGTTGCAAGAGAGCTAAAAGTTGTTGCTGGATACTTTGTGGGGTTGATGGAGGAAAAAAAGACTAACTGTTTTGATCCAAATATAATTTTTGGAGAGGAGATCAAGACAGATTCTCAAACTATTGGCATAATTGGTTGCCAAGATCGTTTTTTGCAGCATGAGCAACTCTTTTCTCATTGCAAGGAGGAGATTTACATGGTGACCGAAGCTGAGAAGCAAAACTGGAAAACCCTAGCAAAACAAAAATACCCAAAACCCTTGATTTTCCATGATGGAAGATTGGCCTTCTTCCCAACCCCAGCAGCCACCTTAGCCATGTTCATGTACTTCCCTCTAGGAATTTTCATCTGCATCATAAGATTCCTCACTGGCATTTTTCTCCCACACAGCATTTCCTCTCCAATCTTGGCCTTCACAGGCACAATCACCACAATTTCAAAACCCAAATCCCCAATTTCCCTAACAAATGATGCCCAAAAACAAAGGGGAAGACTTTATGTCTGCAACCATAGAACCCTCCTAGATCCACTCTATGTCCAACTAGCCATTGACAAATCCCTCTCTGCTGTCACATACAGTTTGAGCAAAGTCAATGAGAAAATTGCCCCCATGAAAACCATCGGATTAACCAGAGATAGAGAGAGAGACGCGAAAACAATGGAGAAACTGTTGCAACAAGGAGACCTTGTGGTTTGCCCAGAAGGAACAACATGCCGAGAGCCATATTTGTTGAGGTTCAGCCCTTTGTTTGCAGAGCTCACTGATGACATTGTTCCTGTAGCCGTTGATGTGAAAGTAAATATGTTTTATGGTACATGTGCTAGTGGGTTCAAAAGTTTGGATCCAGTTTTTCATTTCATGAATCCACATCCTGTTTACACCCTCCAGCTCCTTGATAAACTGCCTGAACAAGAAACATGCAATCTTGGAGGGAAATCAAGGTTTGAAGTTGCCAATCATGTACAAAATGAGATAGGTAAGGCTTTAGGGTTTGAGTGCACCGTTCTCACAAGGAAAGATAAGTATATGGTGTTGGCAGGTAATGATGGGAGCTTTAAGAGCTCAAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

538

Amino Acids

60.02

Weight (kDa)

8.79

Isoelectric Point (pI)

34.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HAD_RAM2_N PF23270 60 - 245 2.6e-62 Glycerol-3-phosphate acyltransferase RAM2-like, HAD-like domain
Acyltransferase PF01553 338 - 443 3.2e-07 Acyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0014754)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1571
AccII CGCG 1 cut(s) 1193
AclWI GGATC 4 cut(s) 611, 1061, 1379, 1392
AcsI RAATTY 1 cut(s) 882
AfaI GTAC 3 cut(s) 869, 1357, 1506
AfiI CCNNNNNNNGG 1 cut(s) 196
AflIII ACRYGT 1 cut(s) 1358
AgsI TTSAA 9 cut(s) 124, 139, 171, 211, 506, 517, 981, 1375, 1490
AhdI GACNNNNNGTC 1 cut(s) 1040
AluBI AGCT 9 cut(s) 221, 278, 398, 556, 752, 1300, 1432, 1596, 1605
AluI AGCT 9 cut(s) 221, 278, 398, 556, 752, 1300, 1432, 1596, 1605
Alw21I GWGCWC 3 cut(s) 1302, 1544, 1607
Alw26I GTCTC 2 cut(s) 1182, 1218
Alw44I GTGCAC 1 cut(s) 1540
AlwI GGATC 4 cut(s) 611, 1061, 1379, 1392
AoxI GGCC 4 cut(s) 249, 331, 825, 951
ApaLI GTGCAC 1 cut(s) 1540
ApeKI GCWGC 2 cut(s) 697, 845
ApoI RAATTY 1 cut(s) 882
AspA2I CCTAGG 1 cut(s) 491
AsuHPI GGTGA 3 cut(s) 463, 754, 961
AvrII CCTAGG 1 cut(s) 491
BaeGI GKGCMC 1 cut(s) 1544
BamHI GGATCC 1 cut(s) 1384
BanII GRGCYC 3 cut(s) 302, 1302, 1607
BbsI GAAGAC 1 cut(s) 1039
Bbv12I GWGCWC 3 cut(s) 1302, 1544, 1607
BbvI GCAGC 2 cut(s) 709, 857
BccI CCATC 4 cut(s) 583, 809, 1169, 1583
BceAI ACGGC 1 cut(s) 1310
BciVI GTATCC 1 cut(s) 566
BcoDI GTCTC 2 cut(s) 1182, 1218
BfaI CTAG 8 cut(s) 23, 305, 492, 776, 878, 1064, 1085, 1365
BfmI CTRYAG 1 cut(s) 1320
BfuAI ACCTGC 1 cut(s) 1571
BfuI GTATCC 1 cut(s) 566
BglI GCCNNNNNGGC 1 cut(s) 257
BisI GCNGC 2 cut(s) 698, 846
BlnI CCTAGG 1 cut(s) 491
BlsI GCNGC 2 cut(s) 699, 847
BmeRI GACNNNNNGTC 1 cut(s) 1040
BmiI GGNNCC 1 cut(s) 1386
BmsI GCATC 2 cut(s) 903, 1003
BoxI GACNNNNGTC 1 cut(s) 398
BpiI GAAGAC 1 cut(s) 1039
BpmI CTGGAG 3 cut(s) 69, 282, 1412
Bpu10I CCTNAGC 1 cut(s) 853
BpuEI CTTGAG 2 cut(s) 316, 1591
BsaI GGTCTC 1 cut(s) 1218
BsaJI CCNNGG 1 cut(s) 491
BsaXI ACNNNNNCTCC 4 cut(s) 1196, 1215, 1226, 1245
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse1I ACTGG 3 cut(s) 770, 916, 1388
Bse3DI GCAATG 1 cut(s) 718
BseDI CCNNGG 1 cut(s) 491
BseGI GGATG 4 cut(s) 77, 387, 430, 1411
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMI GCAATG 1 cut(s) 718
BseMII CTCAG 1 cut(s) 744
BseNI ACTGG 3 cut(s) 770, 916, 1388
BseRI GAGGAG 3 cut(s) 28, 653, 743
BseSI GKGCMC 1 cut(s) 1544
BseXI GCAGC 2 cut(s) 709, 857
BseYI CCCAGC 1 cut(s) 841
Bsh1236I CGCG 1 cut(s) 1193
BshFI GGCC 4 cut(s) 251, 333, 827, 953
BsiHKAI GWGCWC 3 cut(s) 1302, 1544, 1607
BslFI GGGAC 1 cut(s) 406
BslI CCNNNNNNNGG 1 cut(s) 196
BsmAI GTCTC 2 cut(s) 1182, 1218
BsmBI CGTCTC 1 cut(s) 1182
BsmFI GGGAC 1 cut(s) 406
BsnI GGCC 4 cut(s) 251, 333, 827, 953
Bso31I GGTCTC 1 cut(s) 1218
Bsp1286I GDGCHC 4 cut(s) 302, 1302, 1544, 1607
Bsp1407I TGTACA 1 cut(s) 1504
Bsp143I GATC 6 cut(s) 282, 616, 642, 685, 1066, 1384
BspANI GGCC 4 cut(s) 251, 333, 827, 953
BspCNI CTCAG 1 cut(s) 745
BspFNI CGCG 1 cut(s) 1193
BspHI TCATGA 1 cut(s) 1401
BspLI GGNNCC 1 cut(s) 1386
BspMI ACCTGC 1 cut(s) 1571
BspPI GGATC 4 cut(s) 611, 1061, 1379, 1392
BspTNI GGTCTC 1 cut(s) 1218
BsrDI GCAATG 1 cut(s) 718
BsrGI TGTACA 1 cut(s) 1504
BsrI ACTGG 3 cut(s) 770, 916, 1388
BssECI CCNNGG 1 cut(s) 491
BssMI GATC 6 cut(s) 282, 616, 642, 685, 1066, 1384
BssT1I CCWWGG 1 cut(s) 491
Bst4CI ACNGT 6 cut(s) 181, 228, 611, 1121, 1212, 1546
BstAUI TGTACA 1 cut(s) 1504
BstC8I GCNNGC 2 cut(s) 100, 104
BstDEI CTNAG 2 cut(s) 753, 853
BstEII GGTNACC 1 cut(s) 742
BstF5I GGATG 4 cut(s) 77, 387, 430, 1411
BstFNI CGCG 1 cut(s) 1193
BstKTI GATC 6 cut(s) 285, 619, 645, 688, 1069, 1387
BstMAI GTCTC 2 cut(s) 1182, 1218
BstMBI GATC 6 cut(s) 282, 616, 642, 685, 1066, 1384
BstMWI GCNNNNNNNGC 5 cut(s) 155, 257, 703, 854, 1602
BstNSI RCATGY 3 cut(s) 1257, 1362, 1464
BstPAI GACNNNNGTC 1 cut(s) 398
BstPI GGTNACC 1 cut(s) 742
BstSFI CTRYAG 1 cut(s) 1320
BstSLI GKGCMC 1 cut(s) 1544
BstUI CGCG 1 cut(s) 1193
BstV1I GCAGC 2 cut(s) 709, 857
BstV2I GAAGAC 1 cut(s) 1039
BstX2I RGATCY 2 cut(s) 1066, 1384
BstYI RGATCY 2 cut(s) 1066, 1384
BsuI GTATCC 1 cut(s) 566
BsuRI GGCC 4 cut(s) 251, 333, 827, 953
BtsCI GGATG 4 cut(s) 77, 387, 430, 1411
BtsIMutI CAGTG 4 cut(s) 186, 224, 909, 1302
BveI ACCTGC 1 cut(s) 1571
Cac8I GCNNGC 2 cut(s) 100, 104
CciI TCATGA 1 cut(s) 1401
CseI GACGC 1 cut(s) 1199
Csp6I GTAC 3 cut(s) 868, 1356, 1505
CviQI GTAC 3 cut(s) 868, 1356, 1505
DdeI CTNAG 2 cut(s) 753, 853
DpnI GATC 6 cut(s) 284, 618, 644, 687, 1068, 1386
DpnII GATC 6 cut(s) 282, 616, 642, 685, 1066, 1384
DriI GACNNNNNGTC 1 cut(s) 1040
Eam1105I GACNNNNNGTC 1 cut(s) 1040
Ecl136II GAGCTC 2 cut(s) 1300, 1605
Eco130I CCWWGG 1 cut(s) 491
Eco147I AGGCCT 1 cut(s) 333
Eco24I GRGCYC 3 cut(s) 302, 1302, 1607
Eco31I GGTCTC 1 cut(s) 1218
Eco53kI GAGCTC 2 cut(s) 1300, 1605
Eco91I GGTNACC 1 cut(s) 742
EcoICRI GAGCTC 2 cut(s) 1300, 1605
EcoO65I GGTNACC 1 cut(s) 742
EcoT14I CCWWGG 1 cut(s) 491
EcoT38I GRGCYC 3 cut(s) 302, 1302, 1607
ErhI CCWWGG 1 cut(s) 491
Esp3I CGTCTC 1 cut(s) 1182
FalI AAGNNNNNCTT 2 cut(s) 1212, 1244
FaqI GGGAC 1 cut(s) 406
Fnu4HI GCNGC 2 cut(s) 698, 846
FokI GGATG 4 cut(s) 64, 394, 437, 1398
FriOI GRGCYC 3 cut(s) 302, 1302, 1607
Fsp4HI GCNGC 2 cut(s) 698, 846
FspBI CTAG 8 cut(s) 23, 305, 492, 776, 878, 1064, 1085, 1365
GluI GCNGC 2 cut(s) 698, 846
GsaI CCCAGC 1 cut(s) 845
GsuI CTGGAG 3 cut(s) 69, 282, 1412
HaeIII GGCC 4 cut(s) 251, 333, 827, 953
HgaI GACGC 1 cut(s) 1199
HinfI GANTC 3 cut(s) 653, 903, 1405
HphI GGTGA 3 cut(s) 463, 754, 961
Hpy166II GTNNAC 3 cut(s) 52, 1420, 1542
Hpy188I TCNGA 2 cut(s) 132, 1166
Hpy188III TCNNGA 5 cut(s) 6, 86, 295, 646, 1402
Hpy8I GTNNAC 3 cut(s) 52, 1420, 1542
HpyAV CCTTC 6 cut(s) 431, 500, 511, 838, 964, 1238
HpyCH4III ACNGT 6 cut(s) 181, 228, 611, 1121, 1212, 1546
HpyF10VI GCNNNNNNNGC 5 cut(s) 155, 257, 703, 854, 1602
HpyF3I CTNAG 2 cut(s) 753, 853
Kzo9I GATC 6 cut(s) 282, 616, 642, 685, 1066, 1384
LmnI GCTCC 3 cut(s) 23, 1437, 1593
Lsp1109I GCAGC 2 cut(s) 709, 857
LweI GCATC 2 cut(s) 903, 1003
MaeI CTAG 8 cut(s) 23, 305, 492, 776, 878, 1064, 1085, 1365
MaeIII GTNAC 2 cut(s) 742, 1111
MalI GATC 6 cut(s) 284, 618, 644, 687, 1068, 1386
MboI GATC 6 cut(s) 282, 616, 642, 685, 1066, 1384
MboII GAAGA 4 cut(s) 385, 823, 831, 1044
MflI RGATCY 2 cut(s) 1066, 1384
MhlI GDGCHC 4 cut(s) 302, 1302, 1544, 1607
MluCI AATT 6 cut(s) 627, 672, 882, 975, 996, 1143
MmeI TCCRAC 1 cut(s) 1105
MseI TTAA 2 cut(s) 1169, 1599
MslI CAYNNNNRTG 2 cut(s) 245, 863
MspA1I CMGCKG 1 cut(s) 398
MvnI CGCG 1 cut(s) 1193
MwoI GCNNNNNNNGC 5 cut(s) 155, 257, 703, 854, 1602
NdeII GATC 6 cut(s) 282, 616, 642, 685, 1066, 1384
NlaIV GGNNCC 1 cut(s) 1386
NmeAIII GCCGAG 1 cut(s) 1283
NmuCI GTSAC 2 cut(s) 742, 1111
NspI RCATGY 3 cut(s) 1257, 1362, 1464
PagI TCATGA 1 cut(s) 1401
PceI AGGCCT 1 cut(s) 333
PciI ACATGT 1 cut(s) 1358
PfeI GAWTC 3 cut(s) 653, 903, 1405
PkrI GCNGC 2 cut(s) 699, 847
PscI ACATGT 1 cut(s) 1358
PshAI GACNNNNGTC 1 cut(s) 398
Psp124BI GAGCTC 2 cut(s) 1302, 1607
PspEI GGTNACC 1 cut(s) 742
PspFI CCCAGC 1 cut(s) 841
PspN4I GGNNCC 1 cut(s) 1386
PsuI RGATCY 2 cut(s) 1066, 1384
PvuII CAGCTG 1 cut(s) 398
RsaI GTAC 3 cut(s) 869, 1357, 1506
RsaNI GTAC 3 cut(s) 868, 1356, 1505
RseI CAYNNNNRTG 2 cut(s) 245, 863
SacI GAGCTC 2 cut(s) 1302, 1607
SaqAI TTAA 2 cut(s) 1169, 1599
SatI GCNGC 2 cut(s) 698, 846
Sau3AI GATC 6 cut(s) 282, 616, 642, 685, 1066, 1384
SduI GDGCHC 4 cut(s) 302, 1302, 1544, 1607
SfaNI GCATC 2 cut(s) 903, 1003
SfcI CTRYAG 1 cut(s) 1320
SmiMI CAYNNNNRTG 2 cut(s) 245, 863
SmlI CTYRAG 2 cut(s) 295, 1606
SmoI CTYRAG 2 cut(s) 295, 1606
Sse9I AATT 6 cut(s) 627, 672, 882, 975, 996, 1143
SseBI AGGCCT 1 cut(s) 333
SspI AATATT 1 cut(s) 340
SspMI CTAG 8 cut(s) 23, 305, 492, 776, 878, 1064, 1085, 1365
SstI GAGCTC 2 cut(s) 1302, 1607
StuI AGGCCT 1 cut(s) 333
StyI CCWWGG 1 cut(s) 491
TaaI ACNGT 6 cut(s) 181, 228, 611, 1121, 1212, 1546
TaqII GACCGA 1 cut(s) 761
TasI AATT 6 cut(s) 627, 672, 882, 975, 996, 1143
TatI WGTACW 2 cut(s) 867, 1504
TfiI GAWTC 3 cut(s) 653, 903, 1405
Tru1I TTAA 2 cut(s) 1169, 1599
Tru9I TTAA 2 cut(s) 1169, 1599
TscAI CASTG 4 cut(s) 186, 231, 916, 1309
TseFI GTSAC 2 cut(s) 742, 1111
TseI GCWGC 2 cut(s) 697, 845
Tsp45I GTSAC 2 cut(s) 742, 1111
TspDTI ATGAA 7 cut(s) 229, 853, 877, 1169, 1385, 1390, 1418
TspRI CASTG 4 cut(s) 186, 231, 916, 1309
VneI GTGCAC 1 cut(s) 1540
XapI RAATTY 1 cut(s) 882
XceI RCATGY 3 cut(s) 1257, 1362, 1464
XcmI CCANNNNNNNNNTGG 1 cut(s) 415
XmaJI CCTAGG 1 cut(s) 491
XspI CTAG 8 cut(s) 23, 305, 492, 776, 878, 1064, 1085, 1365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.