Rh7CG504800

glycerol-3-phosphate acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0014754
Physical Location & Seq
Forward (+)
68404042 .. 68404803
762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG504800.1

Sequence Viewer

Length: 762 bp
ATGTCTGCCAAACTATTCTCACTAGAAGCTCTTTCCTCCTCCTTCAAAGTCCTTAGCAAACCAAAGAGCACTTCCATTTTGCAGCACAGGGCTAGCAAAGCCCATGCAACCCACTTCAAGTTTCAGAAATACAACTCCCTTGCTTATCAATTAGGAGAGCTAATGTCAAATACTACACTGTTTTTTCAGTTTGAGGGTACATTGTTGAAATCATCTTCACTTTTTCCTTACTTCATGCTTGTGGCCTTTGAAGCTAGTGGCTTCCTTAGAGCTCTTACTTTGTTTCTTTTGTACCCTTTTGTTTGTTTGGTTGGGGGAGAGCTAGGTCTCAACATAATGGTGTTCATATGTTTCTTTGGTATTAGAAAGGAAAAAATGAGGATTGGGAATTCTGTGTTGCCCAAGTTTTTCTTGGAAGATGTTGGGAGTGAAGGGTTTGATGTGGTGATGAAGTGTGGAAAAAAAGTGGGAGTGAGTGACTTGCCTAGAGTCATGGTTGAAGGTTTTCTGAAGGACTATGTTGGGGTTGATGCTGTTGTTGCCAGAGAGCTCAAAGTGGTGGGCCGATACTGTGTGGGTTTGATGGAGGAAATGAACACAAAAAGTTTGGTGGCAAGTCAGATTCTTGGAGATGAAAAACCAAGTAATAGTCAAACAATTGGTATTTGTTGCCACAACAAGTTTCTCCATCAGCAACTCCTTTCTCAAAATTGCAAGGTGGGTCAATCTCATTTGTCTCTCTCTTTCCCTTTCTATAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00561 ko00564 ko01100 ko01110 map00561 map00564 map01100 map01110
Pfam Domains
Protein Families
Acyltransferase

Protein Analysis

253

Amino Acids

28.24

Weight (kDa)

9.19

Isoelectric Point (pI)

29.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HAD_RAM2_N PF23270 59 - 239 1.6e-66 Glycerol-3-phosphate acyltransferase RAM2-like, HAD-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014754)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g38280
malus_domestica MD08G1174800.v1.1 MD15G1361500.v1.1
prunus_persica Prupe.1G508900_v2.0.a1
pyrus_communis pycom08g15010 pycom15g32310
rosa_chinensis RchiOBHm_Chr7g0240281
rosa_laevigata RLG00000000689
rosa_multiflora Rmu_sc0002676.1_g000017 Rmu_sc0002676.1_g000018
rosa_roxburghii Rroxscaffold_3G00220260
rosa_rugosa Rorug07G0334600
rosa_samantha Rh7AG488800 Rh7BG461700 Rh7CG504800 Rh7DG472900
rosa_wichuraiana Rw7G040900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 388
AcuI CTGAAG 1 cut(s) 530
AfaI GTAC 2 cut(s) 199, 293
AgsI TTSAA 5 cut(s) 46, 118, 208, 251, 500
AjuI GAANNNNNNNTTGG 2 cut(s) 55, 87
AluBI AGCT 6 cut(s) 29, 160, 254, 272, 322, 550
AluI AGCT 6 cut(s) 29, 160, 254, 272, 322, 550
Alw21I GWGCWC 3 cut(s) 71, 274, 552
Alw26I GTCTC 2 cut(s) 332, 741
AoxI GGCC 2 cut(s) 243, 562
ApeKI GCWGC 1 cut(s) 82
ApoI RAATTY 1 cut(s) 388
Asp700I GAANNNNTTC 1 cut(s) 504
AspS9I GGNCC 1 cut(s) 562
AsuHPI GGTGA 1 cut(s) 457
AsuNHI GCTAGC 1 cut(s) 92
BanII GRGCYC 2 cut(s) 274, 552
Bbv12I GWGCWC 3 cut(s) 71, 274, 552
BbvI GCAGC 1 cut(s) 94
BccI CCATC 2 cut(s) 577, 696
BcoDI GTCTC 2 cut(s) 332, 741
BfaI CTAG 5 cut(s) 23, 93, 255, 323, 486
BisI GCNGC 1 cut(s) 83
BlsI GCNGC 1 cut(s) 84
BmgT120I GGNCC 1 cut(s) 562
BmsI GCATC 1 cut(s) 520
BmtI GCTAGC 1 cut(s) 96
Bpu10I CCTNAGC 1 cut(s) 53
BsaI GGTCTC 1 cut(s) 332
BseRI GAGGAG 1 cut(s) 28
BseXI GCAGC 1 cut(s) 94
BshFI GGCC 2 cut(s) 245, 564
BsiHKAI GWGCWC 3 cut(s) 71, 274, 552
BsmAI GTCTC 2 cut(s) 332, 741
BsnI GGCC 2 cut(s) 245, 564
Bso31I GGTCTC 1 cut(s) 332
Bsp1286I GDGCHC 3 cut(s) 71, 274, 552
BspANI GGCC 2 cut(s) 245, 564
BspOI GCTAGC 1 cut(s) 96
BspTNI GGTCTC 1 cut(s) 332
Bst4CI ACNGT 2 cut(s) 180, 572
BstC8I GCNNGC 1 cut(s) 94
BstDEI CTNAG 2 cut(s) 53, 266
BstMAI GTCTC 2 cut(s) 332, 741
BstMWI GCNNNNNNNGC 3 cut(s) 98, 251, 539
BstV1I GCAGC 1 cut(s) 94
BsuRI GGCC 2 cut(s) 245, 564
BtsIMutI CAGTG 1 cut(s) 176
Cac8I GCNNGC 1 cut(s) 94
Cfr13I GGNCC 1 cut(s) 562
Csp6I GTAC 2 cut(s) 198, 292
CviAII CATG 3 cut(s) 104, 235, 493
CviQI GTAC 2 cut(s) 198, 292
DdeI CTNAG 2 cut(s) 53, 266
Ecl136II GAGCTC 2 cut(s) 272, 550
Eco24I GRGCYC 2 cut(s) 274, 552
Eco31I GGTCTC 1 cut(s) 332
Eco53kI GAGCTC 2 cut(s) 272, 550
Eco57I CTGAAG 1 cut(s) 530
EcoICRI GAGCTC 2 cut(s) 272, 550
EcoRI GAATTC 1 cut(s) 388
EcoT38I GRGCYC 2 cut(s) 274, 552
FaeI CATG 3 cut(s) 107, 238, 496
FaiI YATR 8 cut(s) 105, 236, 335, 347, 349, 494, 519, 756
FalI AAGNNNNNCTT 2 cut(s) 395, 427
FatI CATG 3 cut(s) 103, 234, 492
FauNDI CATATG 1 cut(s) 347
Fnu4HI GCNGC 1 cut(s) 83
FriOI GRGCYC 2 cut(s) 274, 552
Fsp4HI GCNGC 1 cut(s) 83
FspBI CTAG 5 cut(s) 23, 93, 255, 323, 486
GluI GCNGC 1 cut(s) 83
HaeIII GGCC 2 cut(s) 245, 564
Hin1II CATG 3 cut(s) 107, 238, 496
HinfI GANTC 2 cut(s) 489, 622
HphI GGTGA 1 cut(s) 457
Hpy188I TCNGA 3 cut(s) 126, 510, 621
HpyAV CCTTC 4 cut(s) 52, 425, 494, 505
HpyCH4III ACNGT 2 cut(s) 180, 572
HpyCH4V TGCA 3 cut(s) 82, 107, 714
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 251, 539
HpyF3I CTNAG 2 cut(s) 53, 266
Hsp92II CATG 3 cut(s) 107, 238, 496
LpnPI CCDG 2 cut(s) 73, 556
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 1 cut(s) 520
MaeI CTAG 5 cut(s) 23, 93, 255, 323, 486
MaeIII GTNAC 1 cut(s) 476
MboII GAAGA 2 cut(s) 207, 428
MfeI CAATTG 1 cut(s) 657
MhlI GDGCHC 3 cut(s) 71, 274, 552
MluCI AATT 4 cut(s) 149, 388, 657, 709
MlyI GAGTC 1 cut(s) 498
MnlI CCTC 5 cut(s) 46, 49, 187, 372, 580
MroXI GAANNNNTTC 1 cut(s) 504
MslI CAYNNNNRTG 2 cut(s) 239, 338
MunI CAATTG 1 cut(s) 657
MwoI GCNNNNNNNGC 3 cut(s) 98, 251, 539
NdeI CATATG 1 cut(s) 347
NheI GCTAGC 1 cut(s) 92
NlaIII CATG 3 cut(s) 107, 238, 496
NmuCI GTSAC 1 cut(s) 476
PdmI GAANNNNTTC 1 cut(s) 504
PfeI GAWTC 1 cut(s) 622
PkrI GCNGC 1 cut(s) 84
PleI GAGTC 1 cut(s) 497
PpsI GAGTC 1 cut(s) 497
Psp124BI GAGCTC 2 cut(s) 274, 552
PspPI GGNCC 1 cut(s) 562
RsaI GTAC 2 cut(s) 199, 293
RsaNI GTAC 2 cut(s) 198, 292
RseI CAYNNNNRTG 2 cut(s) 239, 338
SacI GAGCTC 2 cut(s) 274, 552
SatI GCNGC 1 cut(s) 83
Sau96I GGNCC 1 cut(s) 562
SchI GAGTC 1 cut(s) 498
SduI GDGCHC 3 cut(s) 71, 274, 552
SetI ASST 9 cut(s) 31, 162, 256, 274, 324, 328, 505, 552, 720
SfaNI GCATC 1 cut(s) 520
SmiMI CAYNNNNRTG 2 cut(s) 239, 338
Sse9I AATT 4 cut(s) 149, 388, 657, 709
SspMI CTAG 5 cut(s) 23, 93, 255, 323, 486
SstI GAGCTC 2 cut(s) 274, 552
TaaI ACNGT 2 cut(s) 180, 572
TasI AATT 4 cut(s) 149, 388, 657, 709
TfiI GAWTC 1 cut(s) 622
TscAI CASTG 1 cut(s) 183
TseFI GTSAC 1 cut(s) 476
TseI GCWGC 1 cut(s) 82
Tsp45I GTSAC 1 cut(s) 476
TspDTI ATGAA 5 cut(s) 223, 334, 464, 608, 648
TspRI CASTG 1 cut(s) 183
XapI RAATTY 1 cut(s) 388
XcmI CCANNNNNNNNNTGG 1 cut(s) 409
XmnI GAANNNNTTC 1 cut(s) 504
XspI CTAG 5 cut(s) 23, 93, 255, 323, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.