Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0028419

Physical Location & Seq

Genomic Coordinates Reverse (-)

53114191 .. 53119037

Gene Structure 4847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1431100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGAGTCCCAATTCCATCACAATTCCTCCGAGAGGCGCCCAACCTTCCGACCCAAGACTCTCCCTGTCAAATGGTTCAAAGAATGGGTTCCACAAGATGTCATAGCAACAGGTGGAGAGTGCTCTCTAATGAAGTGGGTGAAAGATACATCAGAGGCTTTGGACGAGAAATCAAAGAAAACAATGGCTCTAGAGCCAGAGCTAGAGCCAGAACCAACAACCGAAGTGCTTTTTCTTTGCAGCCATGACAGCTGTGGGAAGATCTTTATTGATGCTGGTGCTTTGAGGAAGCATGCTGACATCCATGCGGAGAGACAACATGTTTGTTGGTTTGAGGGTTGTGGAAAGAAATTTCTGGATAGTTCAAAGATGACAAGACACTTTCATATTCATACCGTAGAAAAGAATTATGTATGTCCTCGTGAAGGTTGTGGCAAGGCCTTCTCCCTGGAAATCTACCTTAGGTACCACATGAAAACACATTCAGCAGACAACTATTATAAGTGTCCATACCCAGCCTGTCTAAGGAGATTTGCATATGAGTACAAGCTTAAAAACCACATTGTCGATTACCATGAAACGATCGACGAGCCAGTTTGTGTGCCAAAATATGCCATCCTACTTGCAGAGAAGCAAATCAGAACTCCCGAGCCTCCTTATGACAAAGAATCCTCGGATCGCCCTTATGCTTGCATTTATGACGGGTGTAGTAAGACGTACATCCATGAAGACAAGCTTAAACTGCATTATAGGAAAATGCATCCTGGCCATGTGTTTGATGTGGCTCGCAACGAGATCGATGAAGCCAGTGATCAAGATGCCTATGCCGGAAAACGTGTGAATGTCAAGAGCCAGCAAAACATGCTCAGACCTAACTGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009968 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031347 GO:0032101 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0097305 GO:1900150 GO:1901000 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905957 GO:1905958 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

295

Amino Acids

34.44

Weight (kDa)

7.92

Isoelectric Point (pI)

60.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028419)

Species	Orthologous Gene IDs
malus_domestica	MD15G1431100.v1.1
pyrus_communis	pycom15g38100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	501
Acc65I	GGTACC	1 cut(s)	465
AccB1I	GGYRCC	2 cut(s)	36, 465
AciI	CCGC	1 cut(s)	308
AclWI	GGATC	1 cut(s)	684
AcoI	YGGCCR	1 cut(s)	766
AcsI	RAATTY	1 cut(s)	350
AcyI	GRCGYC	1 cut(s)	37
AfaI	GTAC	3 cut(s)	467, 545, 719
AfiI	CCNNNNNNNGG	3 cut(s)	33, 425, 525
AflIII	ACRYGT	2 cut(s)	319, 835
AgsI	TTSAA	2 cut(s)	79, 366
AjnI	CCWGG	2 cut(s)	447, 763
AluBI	AGCT	4 cut(s)	202, 252, 550, 736
AluI	AGCT	4 cut(s)	202, 252, 550, 736
Alw21I	GWGCWC	1 cut(s)	125
Alw26I	GTCTC	1 cut(s)	307
AlwI	GGATC	1 cut(s)	684
Ama87I	CYCGRG	1 cut(s)	647
AoxI	GGCC	2 cut(s)	438, 766
ApeKI	GCWGC	1 cut(s)	240
ApoI	RAATTY	1 cut(s)	350
ArsI	GACNNNNNNTTYG	2 cut(s)	306, 338
Asp700I	GAANNNNTTC	1 cut(s)	87
Asp718I	GGTACC	1 cut(s)	465
AspLEI	GCGC	1 cut(s)	39
AsuHPI	GGTGA	1 cut(s)	151
AvaI	CYCGRG	1 cut(s)	647
AxyI	CCTNAGG	1 cut(s)	461
BalI	TGGCCA	1 cut(s)	768
BanI	GGYRCC	2 cut(s)	36, 465
BauI	CACGAG	1 cut(s)	420
BbsI	GAAGAC	1 cut(s)	735
Bbv12I	GWGCWC	1 cut(s)	125
BbvI	GCAGC	1 cut(s)	252
BccI	CCATC	2 cut(s)	24, 623
BcgI	CGANNNNNNTGC	2 cut(s)	778, 812
BciT130I	CCWGG	2 cut(s)	449, 765
BclI	TGATCA	1 cut(s)	811
BcoDI	GTCTC	1 cut(s)	307
BfaI	CTAG	2 cut(s)	191, 203
BfoI	RGCGCY	1 cut(s)	40
BglII	AGATCT	1 cut(s)	261
BisI	GCNGC	1 cut(s)	241
BlsI	GCNGC	1 cut(s)	242
Bme1390I	CCNGG	2 cut(s)	449, 765
BmeT110I	CYCGRG	1 cut(s)	647
BmiI	GGNNCC	3 cut(s)	38, 90, 467
BmrFI	CCNGG	2 cut(s)	449, 765
BmsI	GCATC	3 cut(s)	262, 769, 808
BpiI	GAAGAC	1 cut(s)	735
Bsa29I	ATCGAT	1 cut(s)	798
BsaHI	GRCGYC	1 cut(s)	37
BsaJI	CCNNGG	2 cut(s)	447, 672
BsaXI	ACNNNNNCTCC	2 cut(s)	11, 41
Bsc4I	CCNNNNNNNGG	3 cut(s)	33, 425, 525
Bse1I	ACTGG	3 cut(s)	593, 807, 881
Bse21I	CCTNAGG	1 cut(s)	461
BseBI	CCWGG	2 cut(s)	449, 765
BseCI	ATCGAT	1 cut(s)	798
BseDI	CCNNGG	2 cut(s)	447, 672
BseGI	GGATG	4 cut(s)	300, 615, 720, 760
BseLI	CCNNNNNNNGG	3 cut(s)	33, 425, 525
BseMII	CTCAG	1 cut(s)	880
BseNI	ACTGG	3 cut(s)	593, 807, 881
BseXI	GCAGC	1 cut(s)	252
BseYI	CCCAGC	1 cut(s)	514
Bsh1285I	CGRYCG	1 cut(s)	585
BshFI	GGCC	2 cut(s)	440, 768
BshNI	GGYRCC	2 cut(s)	36, 465
BshVI	ATCGAT	1 cut(s)	798
BsiEI	CGRYCG	1 cut(s)	585
BsiHKAI	GWGCWC	1 cut(s)	125
BsiHKCI	CYCGRG	1 cut(s)	647
BsiSI	CCGG	1 cut(s)	828
BslI	CCNNNNNNNGG	3 cut(s)	33, 425, 525
BsmAI	GTCTC	1 cut(s)	307
BsnI	GGCC	2 cut(s)	440, 768
BsoBI	CYCGRG	1 cut(s)	647
Bsp1286I	GDGCHC	1 cut(s)	125
Bsp143I	GATC	5 cut(s)	261, 582, 676, 795, 811
BspACI	CCGC	1 cut(s)	308
BspANI	GGCC	2 cut(s)	440, 768
BspCNI	CTCAG	1 cut(s)	879
BspDI	ATCGAT	1 cut(s)	798
BspLI	GGNNCC	3 cut(s)	38, 90, 467
BspPI	GGATC	1 cut(s)	684
BspT107I	GGYRCC	2 cut(s)	36, 465
BsrI	ACTGG	3 cut(s)	593, 807, 881
BssECI	CCNNGG	2 cut(s)	447, 672
BssMI	GATC	5 cut(s)	261, 582, 676, 795, 811
BssNI	GRCGYC	1 cut(s)	37
BssSI	CACGAG	1 cut(s)	420
Bst2BI	CACGAG	1 cut(s)	420
Bst2UI	CCWGG	2 cut(s)	449, 765
Bst4CI	ACNGT	1 cut(s)	397
BstACI	GRCGYC	1 cut(s)	37
BstAPI	GCANNNNNTGC	1 cut(s)	862
BstC8I	GCNNGC	4 cut(s)	294, 691, 787, 854
BstDEI	CTNAG	3 cut(s)	461, 524, 866
BstENI	CCTNNNNNAGG	3 cut(s)	31, 423, 523
BstF5I	GGATG	4 cut(s)	300, 615, 720, 760
BstH2I	RGCGCY	1 cut(s)	40
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	5 cut(s)	264, 585, 679, 798, 814
BstMAI	GTCTC	1 cut(s)	307
BstMBI	GATC	5 cut(s)	261, 582, 676, 795, 811
BstMCI	CGRYCG	1 cut(s)	585
BstMWI	GCNNNNNNNGC	3 cut(s)	249, 742, 862
BstNI	CCWGG	2 cut(s)	449, 765
BstNSI	RCATGY	3 cut(s)	296, 323, 865
BstSCI	CCNGG	2 cut(s)	447, 763
BstV1I	GCAGC	1 cut(s)	252
BstV2I	GAAGAC	1 cut(s)	735
BstX2I	RGATCY	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	261
Bsu15I	ATCGAT	1 cut(s)	798
Bsu36I	CCTNAGG	1 cut(s)	461
BsuRI	GGCC	2 cut(s)	440, 768
BsuTUI	ATCGAT	1 cut(s)	798
BtsCI	GGATG	4 cut(s)	300, 615, 720, 760
BtsIMutI	CAGTG	1 cut(s)	814
Cac8I	GCNNGC	4 cut(s)	294, 691, 787, 854
CfoI	GCGC	1 cut(s)	39
ClaI	ATCGAT	1 cut(s)	798
Csp6I	GTAC	3 cut(s)	466, 544, 718
CviAII	CATG	9 cut(s)	245, 293, 305, 320, 472, 575, 725, 770, 862
CviQI	GTAC	3 cut(s)	466, 544, 718
DdeI	CTNAG	3 cut(s)	461, 524, 866
DinI	GGCGCC	1 cut(s)	38
DpnI	GATC	5 cut(s)	263, 584, 678, 797, 813
DpnII	GATC	5 cut(s)	261, 582, 676, 795, 811
EaeI	YGGCCR	1 cut(s)	766
Eco147I	AGGCCT	1 cut(s)	440
Eco81I	CCTNAGG	1 cut(s)	461
Eco88I	CYCGRG	1 cut(s)	647
EcoNI	CCTNNNNNAGG	3 cut(s)	31, 423, 523
EcoRII	CCWGG	2 cut(s)	447, 763
EcoT22I	ATGCAT	1 cut(s)	762
EgeI	GGCGCC	1 cut(s)	38
EheI	GGCGCC	1 cut(s)	38
FaeI	CATG	9 cut(s)	248, 296, 308, 323, 475, 578, 728, 773, 865
FalI	AAGNNNNNCTT	2 cut(s)	720, 752
FatI	CATG	9 cut(s)	244, 292, 304, 319, 471, 574, 724, 769, 861
FauNDI	CATATG	1 cut(s)	538
FbaI	TGATCA	1 cut(s)	811
Fnu4HI	GCNGC	1 cut(s)	241
FokI	GGATG	4 cut(s)	287, 602, 707, 747
Fsp4HI	GCNGC	1 cut(s)	241
FspBI	CTAG	2 cut(s)	191, 203
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	1 cut(s)	241
GsaI	CCCAGC	1 cut(s)	518
HaeII	RGCGCY	1 cut(s)	40
HaeIII	GGCC	2 cut(s)	440, 768
HapII	CCGG	1 cut(s)	828
HhaI	GCGC	1 cut(s)	39
Hin1I	GRCGYC	1 cut(s)	37
Hin1II	CATG	9 cut(s)	248, 296, 308, 323, 475, 578, 728, 773, 865
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HindIII	AAGCTT	2 cut(s)	548, 734
HinfI	GANTC	3 cut(s)	5, 58, 668
HpaII	CCGG	1 cut(s)	828
HphI	GGTGA	1 cut(s)	151
Hpy188I	TCNGA	6 cut(s)	31, 50, 154, 641, 676, 869
Hpy188III	TCNNGA	6 cut(s)	191, 356, 422, 647, 815, 847
Hpy99I	CGWCG	1 cut(s)	590
HpyAV	CCTTC	3 cut(s)	55, 419, 451
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4IV	ACGT	2 cut(s)	716, 835
HpyCH4V	TGCA	6 cut(s)	240, 536, 626, 693, 745, 760
HpyF10VI	GCNNNNNNNGC	3 cut(s)	249, 742, 862
HpyF3I	CTNAG	3 cut(s)	461, 524, 866
HpySE526I	ACGT	2 cut(s)	716, 835
Hsp92I	GRCGYC	1 cut(s)	37
Hsp92II	CATG	9 cut(s)	248, 296, 308, 323, 475, 578, 728, 773, 865
HspAI	GCGC	1 cut(s)	37
KasI	GGCGCC	1 cut(s)	36
KpnI	GGTACC	1 cut(s)	469
Ksp22I	TGATCA	1 cut(s)	811
Kzo9I	GATC	5 cut(s)	261, 582, 676, 795, 811
Lsp1109I	GCAGC	1 cut(s)	252
LweI	GCATC	3 cut(s)	262, 769, 808
MaeI	CTAG	2 cut(s)	191, 203
MaeII	ACGT	2 cut(s)	716, 835
MalI	GATC	5 cut(s)	263, 584, 678, 797, 813
MboI	GATC	5 cut(s)	261, 582, 676, 795, 811
MboII	GAAGA	2 cut(s)	271, 740
MflI	RGATCY	1 cut(s)	261
MhlI	GDGCHC	1 cut(s)	125
MlsI	TGGCCA	1 cut(s)	768
MluCI	AATT	4 cut(s)	11, 22, 350, 406
MluNI	TGGCCA	1 cut(s)	768
Mly113I	GGCGCC	1 cut(s)	37
MlyI	GAGTC	2 cut(s)	14, 52
MmeI	TCCRAC	1 cut(s)	73
MnlI	CCTC	8 cut(s)	27, 37, 148, 279, 328, 429, 663, 682
Mox20I	TGGCCA	1 cut(s)	768
Mph1103I	ATGCAT	1 cut(s)	762
MroXI	GAANNNNTTC	1 cut(s)	87
MscI	TGGCCA	1 cut(s)	768
MseI	TTAA	2 cut(s)	552, 738
Msp20I	TGGCCA	1 cut(s)	768
MspA1I	CMGCKG	1 cut(s)	252
MspI	CCGG	1 cut(s)	828
MspR9I	CCNGG	2 cut(s)	449, 765
MvaI	CCWGG	2 cut(s)	449, 765
MwoI	GCNNNNNNNGC	3 cut(s)	249, 742, 862
NarI	GGCGCC	1 cut(s)	37
NdeI	CATATG	1 cut(s)	538
NdeII	GATC	5 cut(s)	261, 582, 676, 795, 811
NlaIII	CATG	9 cut(s)	248, 296, 308, 323, 475, 578, 728, 773, 865
NlaIV	GGNNCC	3 cut(s)	38, 90, 467
NsiI	ATGCAT	1 cut(s)	762
NspI	RCATGY	3 cut(s)	296, 323, 865
PaeI	GCATGC	1 cut(s)	296
PceI	AGGCCT	1 cut(s)	440
PciI	ACATGT	1 cut(s)	319
PdmI	GAANNNNTTC	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	668
PkrI	GCNGC	1 cut(s)	242
Ple19I	CGATCG	1 cut(s)	585
PleI	GAGTC	2 cut(s)	13, 52
PluTI	GGCGCC	1 cut(s)	40
PpsI	GAGTC	2 cut(s)	13, 52
PscI	ACATGT	1 cut(s)	319
PsiI	TTATAA	1 cut(s)	501
Psp6I	CCWGG	2 cut(s)	447, 763
PspFI	CCCAGC	1 cut(s)	514
PspGI	CCWGG	2 cut(s)	447, 763
PspN4I	GGNNCC	3 cut(s)	38, 90, 467
PsuI	RGATCY	1 cut(s)	261
PvuI	CGATCG	1 cut(s)	585
PvuII	CAGCTG	1 cut(s)	252
RsaI	GTAC	3 cut(s)	467, 545, 719
RsaNI	GTAC	3 cut(s)	466, 544, 718
SaqAI	TTAA	2 cut(s)	552, 738
SatI	GCNGC	1 cut(s)	241
Sau3AI	GATC	5 cut(s)	261, 582, 676, 795, 811
SchI	GAGTC	2 cut(s)	14, 52
ScrFI	CCNGG	2 cut(s)	449, 765
SduI	GDGCHC	1 cut(s)	125
SfaNI	GCATC	3 cut(s)	262, 769, 808
SfoI	GGCGCC	1 cut(s)	38
SphI	GCATGC	1 cut(s)	296
Sse9I	AATT	4 cut(s)	11, 22, 350, 406
SseBI	AGGCCT	1 cut(s)	440
SsiI	CCGC	1 cut(s)	308
SspDI	GGCGCC	1 cut(s)	36
SspMI	CTAG	2 cut(s)	191, 203
StuI	AGGCCT	1 cut(s)	440
StyD4I	CCNGG	2 cut(s)	447, 763
TaaI	ACNGT	1 cut(s)	397
TaiI	ACGT	2 cut(s)	719, 838
TaqI	TCGA	3 cut(s)	567, 585, 798
TasI	AATT	4 cut(s)	11, 22, 350, 406
TatI	WGTACW	1 cut(s)	543
TfiI	GAWTC	1 cut(s)	668
Tru1I	TTAA	2 cut(s)	552, 738
Tru9I	TTAA	2 cut(s)	552, 738
TscAI	CASTG	1 cut(s)	814
TseI	GCWGC	1 cut(s)	240
TspDTI	ATGAA	7 cut(s)	146, 374, 380, 488, 591, 741, 816
TspRI	CASTG	1 cut(s)	814
XagI	CCTNNNNNAGG	3 cut(s)	31, 423, 523
XapI	RAATTY	1 cut(s)	350
XbaI	TCTAGA	1 cut(s)	190
XceI	RCATGY	3 cut(s)	296, 323, 865
XcmI	CCANNNNNNNNNTGG	1 cut(s)	251
XmnI	GAANNNNTTC	1 cut(s)	87
XspI	CTAG	2 cut(s)	191, 203
Zsp2I	ATGCAT	1 cut(s)	762

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.