Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0028419

Physical Location & Seq

Genomic Coordinates Reverse (-)

37978350 .. 37980253

Gene Structure 1904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g38100.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGCTCCAGAGCCAGAGCCAGAACCAACAACCAAAGTACTTTTTCTTTGCAGCTATGACAGCTGTGGGAAGATCTTTATTGATGCTGGTGCTTTGAGGAAGCATGCTGACATCCATGCGGAGATACAACATGTTTGTCTGTACGAGGGTTGTGGAAAGAAATTTTTGGATAGTTCAAAGATGGAAAGACACTTTCTTATTCATTCCGAAGAAAAGGATTATGTATGTCCTCGTGAAGGCTGTGGCAAGGCCTTCTCCCAGGAATACTTCCTTATGTACCACATGAAAACACATTCAGCAGAGAACTATTACAACTGTCCATACCCAGACTGCCTAAGGAGATATCCATATGAGTACAAGCTTAAAAACCACATTGTAGATTACCATGAAACGATCGACGAGCCAGTTTCTGTGCCAAAATATGCCACCCTACCTGCAGAGAAGCAAATCAGAACTCCCAAGCCTCCTTATAGCAAAGCATCATCGGATCTTTCTTATGCTTGCATTTATGACGGGTGTAATAAGACGTACATCCATGAAGACAAGCTTAAGCGGCATTATAGGGCAGTGCATCCTGGCCATGTGTTTGATGTTGCTCGCAATGAGATCGATGAAGCCAGTGATCAAGATGCCTATGCCGGAAAACGTGTGAATGTCAAAAGCCAGCAAAACATGCTCAGACCTAACTGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002831 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009628 GO:0009642 GO:0009646 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009966 GO:0009968 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0023051 GO:0023057 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031347 GO:0032101 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0044424 GO:0044464 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0047484 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051173 GO:0051252 GO:0051253 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0097305 GO:1900150 GO:1901000 GO:1901363 GO:1901419 GO:1901420 GO:1901700 GO:1902679 GO:1902680 GO:1903506 GO:1903507 GO:1903508 GO:1905957 GO:1905958 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2

Protein Analysis

232

Amino Acids

26.88

Weight (kDa)

6.88

Isoelectric Point (pI)

59.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028419)

Species	Orthologous Gene IDs
malus_domestica	MD15G1431100.v1.1
pyrus_communis	pycom15g38100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	442
AciI	CCGC	2 cut(s)	119, 553
AclWI	GGATC	1 cut(s)	495
AcoI	YGGCCR	1 cut(s)	577
AcsI	RAATTY	1 cut(s)	161
AfaI	GTAC	5 cut(s)	39, 143, 278, 356, 530
AfiI	CCNNNNNNNGG	1 cut(s)	236
AflII	CTTAAG	1 cut(s)	548
AflIII	ACRYGT	2 cut(s)	130, 646
AgsI	TTSAA	1 cut(s)	177
AjnI	CCWGG	2 cut(s)	258, 574
AluBI	AGCT	4 cut(s)	54, 63, 361, 547
AluI	AGCT	4 cut(s)	54, 63, 361, 547
AlwI	GGATC	1 cut(s)	495
AlwNI	CAGNNNCTG	1 cut(s)	410
AoxI	GGCC	2 cut(s)	249, 577
ApeKI	GCWGC	1 cut(s)	51
ApoI	RAATTY	1 cut(s)	161
AxyI	CCTNAGG	1 cut(s)	335
BalI	TGGCCA	1 cut(s)	579
BauI	CACGAG	1 cut(s)	231
BbsI	GAAGAC	1 cut(s)	546
BbvI	GCAGC	1 cut(s)	63
BccI	CCATC	1 cut(s)	175
BcgI	CGANNNNNNTGC	2 cut(s)	589, 623
BciT130I	CCWGG	2 cut(s)	260, 576
BclI	TGATCA	1 cut(s)	622
BfmI	CTRYAG	1 cut(s)	435
BfrI	CTTAAG	1 cut(s)	548
BfuAI	ACCTGC	1 cut(s)	442
BglII	AGATCT	1 cut(s)	72
BisI	GCNGC	2 cut(s)	52, 554
BlsI	GCNGC	2 cut(s)	53, 555
BmcAI	AGTACT	1 cut(s)	39
Bme1390I	CCNGG	2 cut(s)	260, 576
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	2 cut(s)	260, 576
BmsI	GCATC	4 cut(s)	73, 488, 580, 619
BpiI	GAAGAC	1 cut(s)	546
Bsa29I	ATCGAT	1 cut(s)	609
BsaJI	CCNNGG	1 cut(s)	258
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
Bse1I	ACTGG	3 cut(s)	404, 618, 692
Bse21I	CCTNAGG	1 cut(s)	335
Bse3DI	GCAATG	1 cut(s)	607
BseBI	CCWGG	2 cut(s)	260, 576
BseCI	ATCGAT	1 cut(s)	609
BseDI	CCNNGG	1 cut(s)	258
BseGI	GGATG	3 cut(s)	111, 531, 571
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseMI	GCAATG	1 cut(s)	607
BseMII	CTCAG	1 cut(s)	691
BseNI	ACTGG	3 cut(s)	404, 618, 692
BseXI	GCAGC	1 cut(s)	63
Bsh1285I	CGRYCG	1 cut(s)	396
BshFI	GGCC	2 cut(s)	251, 579
BshVI	ATCGAT	1 cut(s)	609
BsiEI	CGRYCG	1 cut(s)	396
BsiSI	CCGG	1 cut(s)	639
BslI	CCNNNNNNNGG	1 cut(s)	236
BsnI	GGCC	2 cut(s)	251, 579
Bsp143I	GATC	5 cut(s)	72, 393, 487, 606, 622
BspACI	CCGC	2 cut(s)	119, 553
BspANI	GGCC	2 cut(s)	251, 579
BspCNI	CTCAG	1 cut(s)	690
BspDI	ATCGAT	1 cut(s)	609
BspLI	GGNNCC	1 cut(s)	6
BspMAI	CTGCAG	1 cut(s)	439
BspMI	ACCTGC	1 cut(s)	442
BspPI	GGATC	1 cut(s)	495
BspTI	CTTAAG	1 cut(s)	548
BsrDI	GCAATG	1 cut(s)	607
BsrI	ACTGG	3 cut(s)	404, 618, 692
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	5 cut(s)	72, 393, 487, 606, 622
BssSI	CACGAG	1 cut(s)	231
Bst2BI	CACGAG	1 cut(s)	231
Bst2UI	CCWGG	2 cut(s)	260, 576
Bst4CI	ACNGT	1 cut(s)	317
BstAFI	CTTAAG	1 cut(s)	548
BstAPI	GCANNNNNTGC	1 cut(s)	673
BstC8I	GCNNGC	4 cut(s)	105, 502, 598, 665
BstDEI	CTNAG	2 cut(s)	335, 677
BstENI	CCTNNNNNAGG	1 cut(s)	234
BstF5I	GGATG	3 cut(s)	111, 531, 571
BstKTI	GATC	5 cut(s)	75, 396, 490, 609, 625
BstMBI	GATC	5 cut(s)	72, 393, 487, 606, 622
BstMCI	CGRYCG	1 cut(s)	396
BstMWI	GCNNNNNNNGC	3 cut(s)	60, 553, 673
BstNI	CCWGG	2 cut(s)	260, 576
BstNSI	RCATGY	3 cut(s)	107, 134, 676
BstSCI	CCNGG	2 cut(s)	258, 574
BstSFI	CTRYAG	1 cut(s)	435
BstV1I	GCAGC	1 cut(s)	63
BstV2I	GAAGAC	1 cut(s)	546
BstX2I	RGATCY	2 cut(s)	72, 487
BstYI	RGATCY	2 cut(s)	72, 487
Bsu15I	ATCGAT	1 cut(s)	609
Bsu36I	CCTNAGG	1 cut(s)	335
BsuRI	GGCC	2 cut(s)	251, 579
BsuTUI	ATCGAT	1 cut(s)	609
BtsCI	GGATG	3 cut(s)	111, 531, 571
BtsI	GCAGTG	1 cut(s)	573
BtsIMutI	CAGTG	2 cut(s)	573, 625
BveI	ACCTGC	1 cut(s)	442
Cac8I	GCNNGC	4 cut(s)	105, 502, 598, 665
CaiI	CAGNNNCTG	1 cut(s)	410
ClaI	ATCGAT	1 cut(s)	609
Csp6I	GTAC	5 cut(s)	38, 142, 277, 355, 529
CviAII	CATG	8 cut(s)	104, 116, 131, 283, 386, 536, 581, 673
CviQI	GTAC	5 cut(s)	38, 142, 277, 355, 529
DdeI	CTNAG	2 cut(s)	335, 677
DpnI	GATC	5 cut(s)	74, 395, 489, 608, 624
DpnII	GATC	5 cut(s)	72, 393, 487, 606, 622
EaeI	YGGCCR	1 cut(s)	577
Eco147I	AGGCCT	1 cut(s)	251
Eco32I	GATATC	1 cut(s)	344
Eco81I	CCTNAGG	1 cut(s)	335
EcoNI	CCTNNNNNAGG	1 cut(s)	234
EcoRII	CCWGG	2 cut(s)	258, 574
EcoRV	GATATC	1 cut(s)	344
FaeI	CATG	8 cut(s)	107, 119, 134, 286, 389, 539, 584, 676
FalI	AAGNNNNNCTT	2 cut(s)	531, 563
FatI	CATG	8 cut(s)	103, 115, 130, 282, 385, 535, 580, 672
FauNDI	CATATG	1 cut(s)	349
FbaI	TGATCA	1 cut(s)	622
Fnu4HI	GCNGC	2 cut(s)	52, 554
FokI	GGATG	3 cut(s)	98, 518, 558
Fsp4HI	GCNGC	2 cut(s)	52, 554
GluI	GCNGC	2 cut(s)	52, 554
HaeIII	GGCC	2 cut(s)	251, 579
HapII	CCGG	1 cut(s)	639
Hin1II	CATG	8 cut(s)	107, 119, 134, 286, 389, 539, 584, 676
HindIII	AAGCTT	2 cut(s)	359, 545
HpaII	CCGG	1 cut(s)	639
Hpy188I	TCNGA	4 cut(s)	208, 452, 487, 680
Hpy188III	TCNNGA	3 cut(s)	8, 233, 626
Hpy99I	CGWCG	1 cut(s)	401
HpyAV	CCTTC	2 cut(s)	230, 262
HpyCH4III	ACNGT	1 cut(s)	317
HpyCH4IV	ACGT	2 cut(s)	527, 646
HpyCH4V	TGCA	4 cut(s)	51, 437, 504, 571
HpyF10VI	GCNNNNNNNGC	3 cut(s)	60, 553, 673
HpyF3I	CTNAG	2 cut(s)	335, 677
HpySE526I	ACGT	2 cut(s)	527, 646
Hsp92II	CATG	8 cut(s)	107, 119, 134, 286, 389, 539, 584, 676
Ksp22I	TGATCA	1 cut(s)	622
Kzo9I	GATC	5 cut(s)	72, 393, 487, 606, 622
LmnI	GCTCC	1 cut(s)	10
Lsp1109I	GCAGC	1 cut(s)	63
LweI	GCATC	4 cut(s)	73, 488, 580, 619
MaeII	ACGT	2 cut(s)	527, 646
MalI	GATC	5 cut(s)	74, 395, 489, 608, 624
MboI	GATC	5 cut(s)	72, 393, 487, 606, 622
MboII	GAAGA	3 cut(s)	82, 221, 551
MflI	RGATCY	2 cut(s)	72, 487
MlsI	TGGCCA	1 cut(s)	579
MluCI	AATT	1 cut(s)	161
MluNI	TGGCCA	1 cut(s)	579
MnlI	CCTC	4 cut(s)	90, 139, 240, 474
Mox20I	TGGCCA	1 cut(s)	579
MscI	TGGCCA	1 cut(s)	579
MseI	TTAA	2 cut(s)	363, 549
Msp20I	TGGCCA	1 cut(s)	579
MspA1I	CMGCKG	1 cut(s)	63
MspCI	CTTAAG	1 cut(s)	548
MspI	CCGG	1 cut(s)	639
MspR9I	CCNGG	2 cut(s)	260, 576
MvaI	CCWGG	2 cut(s)	260, 576
MwoI	GCNNNNNNNGC	3 cut(s)	60, 553, 673
NdeI	CATATG	1 cut(s)	349
NdeII	GATC	5 cut(s)	72, 393, 487, 606, 622
NlaIII	CATG	8 cut(s)	107, 119, 134, 286, 389, 539, 584, 676
NlaIV	GGNNCC	1 cut(s)	6
NspI	RCATGY	3 cut(s)	107, 134, 676
PaeI	GCATGC	1 cut(s)	107
PceI	AGGCCT	1 cut(s)	251
PciI	ACATGT	1 cut(s)	130
PkrI	GCNGC	2 cut(s)	53, 555
Ple19I	CGATCG	1 cut(s)	396
PscI	ACATGT	1 cut(s)	130
Psp6I	CCWGG	2 cut(s)	258, 574
PspGI	CCWGG	2 cut(s)	258, 574
PspN4I	GGNNCC	1 cut(s)	6
PstI	CTGCAG	1 cut(s)	439
PstNI	CAGNNNCTG	1 cut(s)	410
PsuI	RGATCY	2 cut(s)	72, 487
PvuI	CGATCG	1 cut(s)	396
PvuII	CAGCTG	1 cut(s)	63
RsaI	GTAC	5 cut(s)	39, 143, 278, 356, 530
RsaNI	GTAC	5 cut(s)	38, 142, 277, 355, 529
SaqAI	TTAA	2 cut(s)	363, 549
SatI	GCNGC	2 cut(s)	52, 554
Sau3AI	GATC	5 cut(s)	72, 393, 487, 606, 622
ScaI	AGTACT	1 cut(s)	39
ScrFI	CCNGG	2 cut(s)	260, 576
SetI	ASST	8 cut(s)	56, 65, 363, 436, 530, 549, 649, 685
SfaNI	GCATC	4 cut(s)	73, 488, 580, 619
SfcI	CTRYAG	1 cut(s)	435
SmlI	CTYRAG	1 cut(s)	548
SmoI	CTYRAG	1 cut(s)	548
SphI	GCATGC	1 cut(s)	107
Sse9I	AATT	1 cut(s)	161
SseBI	AGGCCT	1 cut(s)	251
SsiI	CCGC	2 cut(s)	119, 553
StuI	AGGCCT	1 cut(s)	251
StyD4I	CCNGG	2 cut(s)	258, 574
TaaI	ACNGT	1 cut(s)	317
TaiI	ACGT	2 cut(s)	530, 649
TaqI	TCGA	2 cut(s)	396, 609
TasI	AATT	1 cut(s)	161
TatI	WGTACW	2 cut(s)	37, 354
TauI	GCSGC	1 cut(s)	556
Tru1I	TTAA	2 cut(s)	363, 549
Tru9I	TTAA	2 cut(s)	363, 549
TscAI	CASTG	2 cut(s)	573, 625
TseI	GCWGC	1 cut(s)	51
TspDTI	ATGAA	5 cut(s)	191, 299, 402, 552, 627
TspRI	CASTG	2 cut(s)	573, 625
Vha464I	CTTAAG	1 cut(s)	548
XagI	CCTNNNNNAGG	1 cut(s)	234
XapI	RAATTY	1 cut(s)	161
XceI	RCATGY	3 cut(s)	107, 134, 676
ZrmI	AGTACT	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.