MD16G1000400.v1.1

Delta(24)-sterol

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
22311 .. 26097
3787 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1000400.v1.1.491

Sequence Viewer

Length: 1707 bp
ATGTCGGATCTTCAAACCCCACTGCGTCCAAGGAGGAAGACGGCTGTGGTGGACTTTCTTGTTCAATTCCGATGGATTGTTGTTATCTTTGTTGTGCTCCCCATCTCCTTCACTATGTACTTTCTCACATACCTCGGGGATATAAGATCTGAGATGAAGTCCTACAAGAGGCGTCAAAAGGAACATGATGAAAATGTTCAGAAGGTCGTAAAACGGCTCAAAGACAGGAACCCATCAAAGGATGGGCTTGTTTGCACAGCACGAAAACCATGGATAGCTGTTGGAATGAGGAATGTTGACTACAAGCGGGCTCGTCATTTTGAGGTTGATTTGTCTGCATTCCGAAATGTCCTTGAAATTGATCAAGAGAGAATGATTGCAAAAGTTGAGCCCTTAGTCAACATGGGGCAGATAACCAGGGTAACTGTTCCATTGAATCTCGCCCTTGCCGTGGTTGCTGAGTTTGATGATCTTACCGTTGGTGGTCTCATTAATGGCTATGGAATTGAAGGAAGCTCTCACATCTATGGACTTTTCTCTGATACAGTTGTGGCCTATGAGATTGTTCTTGCAGATGGCCGAGTTGTCAGAGCCACCAGGGATAATGAGTACTCTGATCTTTTCTATGCTATTCCATGGTCTCAGGGAACATTGGGGCTTCTTGTCTCTGCTGAGATCAAGCTGATACCCATCAAGGAATACATGAGGCTGACATACAAACCTGTGGTGGGAAATCTGAAAGAGATTGCACAGGCATACAGTGATTCTTTTGCTCCGAGAGATGGAGATCAGGACAACCCCGAAAAGGTTCCAGACTTTGTTGAAACCATGATTTATACTCCAACGGAAGCTGTGTGCATGACGGGTAGATATGCTTCAAAAGAAGAAGCAAAGAAGAAGGGGAATGTGATTAACGAAGTTGGGTGGTGGTTTAAACCCTGGTTCTATCAGCATGCCGAGAAAGCACTAAAGAAAGGGGAGTTTGTAGAATACATCCCGACAAGGGACTACTACCACAGGCACACTCGGAGTATTTATTGGGAGGGAAAGCTTATCCTTCCATTTGCTGATCAGTGGTGGTTCAGATTTTTGTTGGGCTGGATGATGCCACCCAAGATTTCTCTGCTCAAGGCTACTCAAGGTGAAGCCATTAGAAACTACTACCACGACAATCACGTCATTCAAGACATGCTTGTTCCTCTTTACAAGGTTGGGGATGCTTTAGAATGGGTTCACCATGAGATGGAGGTGTACCCCATCTGGCTCTGCCCTCACAGAATGTACAAGAATCCCATCAAGACAATGATATACACCGAACCAGGCTTTGAGCAACACCGCAGGCAGGGAGACACGCATTACTCTCAGATGTACACAGATGTTGGTGTCTACTATGCACCGGGCCCCGTCCTGAGGGGTGAGGTTTTTGATGGTGCAGAAGCAGTTCGACGGATGGAGAATTGGCTGATTGAGAATCATGGTTTCCAGCCTCAGTATGCTGTGTCCGAGCTGAACGAGAAGAACTTCTGGAGGATGTTTGATGCAGGGCATTACGAGAACTGCAGGAGGAAGTATGGTGCTGTGGGAACATTCATGAGTGTGTACTACAAGTCCAAGAAGGGAAGGAAGACCGAGAAGGAGGTGCAGGAAGCCGAGCAAGCCATCCTTGAGACTCCTATCGCCGAGGTTGATGAGCCAGTGGACTACTGA

Protein Analysis

569

Amino Acids

66.34

Weight (kDa)

6.96

Isoelectric Point (pI)

38.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_4 PF01565 109 - 198 1.9e-15 FAD binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1175
AccB7I CCANNNNNTGG 1 cut(s) 1243
AccI GTMKAC 1 cut(s) 1386
AciI CCGC 2 cut(s) 307, 1336
AclWI GGATC 1 cut(s) 15
AcoI YGGCCR 1 cut(s) 577
AcyI GRCGYC 1 cut(s) 172
AfaI GTAC 6 cut(s) 119, 611, 1253, 1283, 1370, 1601
AgsI TTSAA 8 cut(s) 14, 65, 356, 436, 509, 824, 879, 1184
AjiI CACGTC 1 cut(s) 1177
AjnI CCWGG 4 cut(s) 416, 596, 938, 1318
AluBI AGCT 6 cut(s) 278, 516, 682, 851, 1051, 1507
AluI AGCT 6 cut(s) 278, 516, 682, 851, 1051, 1507
Alw21I GWGCWC 1 cut(s) 99
Alw26I GTCTC 5 cut(s) 491, 645, 670, 1341, 1661
AlwI GGATC 1 cut(s) 15
Ama87I CYCGRG 1 cut(s) 134
AoxI GGCC 3 cut(s) 552, 577, 1399
ApaI GGGCCC 1 cut(s) 1403
AseI ATTAAT 1 cut(s) 492
Asp700I GAANNNNTTC 5 cut(s) 195, 807, 1230, 1440, 1520
AspS9I GGNCC 2 cut(s) 1399, 1400
AsuC2I CCSGG 1 cut(s) 1398
AsuHPI GGTGA 3 cut(s) 1154, 1226, 1427
AvaI CYCGRG 1 cut(s) 134
AxyI CCTNAGG 1 cut(s) 1409
BaeGI GKGCMC 1 cut(s) 1403
BaeI ACNNNNGTAYC 2 cut(s) 534, 567
BanII GRGCYC 3 cut(s) 313, 393, 1403
BarI GAAGNNNNNNTAC 2 cut(s) 859, 891
BbsI GAAGAC 2 cut(s) 44, 1631
Bbv12I GWGCWC 1 cut(s) 99
BceAI ACGGC 3 cut(s) 57, 230, 434
BciT130I CCWGG 4 cut(s) 418, 598, 940, 1320
BclI TGATCA 2 cut(s) 361, 1069
BcnI CCSGG 1 cut(s) 1398
BcoDI GTCTC 5 cut(s) 491, 645, 670, 1341, 1661
BfmI CTRYAG 1 cut(s) 1558
BglII AGATCT 1 cut(s) 146
BmcAI AGTACT 1 cut(s) 611
Bme1390I CCNGG 5 cut(s) 418, 598, 940, 1320, 1398
BmeT110I CYCGRG 1 cut(s) 134
BmgBI CACGTC 1 cut(s) 1177
BmgT120I GGNCC 2 cut(s) 1399, 1400
BmiI GGNNCC 4 cut(s) 230, 810, 1401, 1402
BmrFI CCNGG 5 cut(s) 418, 598, 940, 1320, 1398
BmsI GCATC 3 cut(s) 1095, 1207, 1528
BpiI GAAGAC 2 cut(s) 44, 1631
BpmI CTGGAG 1 cut(s) 1546
BpuEI CTTGAG 3 cut(s) 1112, 1122, 1685
BpuMI CCSGG 1 cut(s) 1398
BsaBI GATNNNNATC 2 cut(s) 689, 786
BsaHI GRCGYC 1 cut(s) 172
BsaI GGTCTC 2 cut(s) 491, 645
BsaJI CCNNGG 9 cut(s) 29, 133, 269, 417, 450, 597, 635, 938, 1680
Bse1I ACTGG 1 cut(s) 1694
Bse21I CCTNAGG 1 cut(s) 1409
Bse8I GATNNNNATC 2 cut(s) 689, 786
BseBI CCWGG 4 cut(s) 418, 598, 940, 1320
BseDI CCNNGG 9 cut(s) 29, 133, 269, 417, 450, 597, 635, 938, 1680
BseGI GGATG 7 cut(s) 247, 993, 1107, 1222, 1455, 1536, 1659
BseJI GATNNNNATC 2 cut(s) 689, 786
BseMII CTCAG 7 cut(s) 141, 450, 656, 663, 1376, 1400, 1502
BseNI ACTGG 1 cut(s) 1694
BseSI GKGCMC 1 cut(s) 1403
BsgI GTGCAG 2 cut(s) 1452, 1661
BshFI GGCC 3 cut(s) 554, 579, 1401
BsiHKAI GWGCWC 1 cut(s) 99
BsiHKCI CYCGRG 1 cut(s) 134
BsiSI CCGG 1 cut(s) 1397
BslFI GGGAC 1 cut(s) 1019
BsmAI GTCTC 5 cut(s) 491, 645, 670, 1341, 1661
BsmFI GGGAC 1 cut(s) 1019
BsmI GAATGC 1 cut(s) 338
BsnI GGCC 3 cut(s) 554, 579, 1401
Bso31I GGTCTC 2 cut(s) 491, 645
BsoBI CYCGRG 1 cut(s) 134
Bsp120I GGGCCC 1 cut(s) 1399
Bsp1286I GDGCHC 4 cut(s) 99, 313, 393, 1403
Bsp1407I TGTACA 2 cut(s) 1281, 1368
Bsp143I GATC 8 cut(s) 7, 146, 361, 469, 616, 675, 787, 1069
Bsp19I CCATGG 2 cut(s) 269, 635
BspACI CCGC 2 cut(s) 307, 1336
BspANI GGCC 3 cut(s) 554, 579, 1401
BspCNI CTCAG 7 cut(s) 142, 451, 655, 664, 1375, 1401, 1501
BspHI TCATGA 1 cut(s) 1590
BspLI GGNNCC 4 cut(s) 230, 810, 1401, 1402
BspMAI CTGCAG 1 cut(s) 1562
BspPI GGATC 1 cut(s) 15
BspTNI GGTCTC 2 cut(s) 491, 645
BsrGI TGTACA 2 cut(s) 1281, 1368
BsrI ACTGG 1 cut(s) 1694
BssECI CCNNGG 9 cut(s) 29, 133, 269, 417, 450, 597, 635, 938, 1680
BssMI GATC 8 cut(s) 7, 146, 361, 469, 616, 675, 787, 1069
BssNI GRCGYC 1 cut(s) 172
BssT1I CCWWGG 3 cut(s) 29, 269, 635
Bst2UI CCWGG 4 cut(s) 418, 598, 940, 1320
Bst4CI ACNGT 4 cut(s) 427, 478, 547, 761
BstACI GRCGYC 1 cut(s) 172
BstAUI TGTACA 2 cut(s) 1281, 1368
BstC8I GCNNGC 4 cut(s) 309, 954, 1340, 1656
BstDEI CTNAG 8 cut(s) 150, 394, 459, 642, 672, 1362, 1409, 1488
BstDSI CCRYGG 3 cut(s) 269, 450, 635
BstENI CCTNNNNNAGG 1 cut(s) 166
BstF5I GGATG 7 cut(s) 247, 993, 1107, 1222, 1455, 1536, 1659
BstKTI GATC 8 cut(s) 10, 149, 364, 472, 619, 678, 790, 1072
BstMAI GTCTC 5 cut(s) 491, 645, 670, 1341, 1661
BstMBI GATC 8 cut(s) 7, 146, 361, 469, 616, 675, 787, 1069
BstMWI GCNNNNNNNGC 3 cut(s) 455, 962, 1655
BstNI CCWGG 4 cut(s) 418, 598, 940, 1320
BstNSI RCATGY 2 cut(s) 956, 1192
BstSCI CCNGG 5 cut(s) 416, 596, 938, 1318, 1396
BstSFI CTRYAG 1 cut(s) 1558
BstSLI GKGCMC 1 cut(s) 1403
BstV2I GAAGAC 2 cut(s) 44, 1631
BstX2I RGATCY 2 cut(s) 7, 146
BstYI RGATCY 2 cut(s) 7, 146
Bsu36I CCTNAGG 1 cut(s) 1409
BsuRI GGCC 3 cut(s) 554, 579, 1401
BtgI CCRYGG 3 cut(s) 269, 450, 635
BtrI CACGTC 1 cut(s) 1177
BtsCI GGATG 7 cut(s) 247, 993, 1107, 1222, 1455, 1536, 1659
BtsI GCAGTG 1 cut(s) 20
BtsIMutI CAGTG 4 cut(s) 20, 766, 1079, 1701
Cac8I GCNNGC 4 cut(s) 309, 954, 1340, 1656
CciI TCATGA 1 cut(s) 1590
Cfr13I GGNCC 2 cut(s) 1399, 1400
CseI GACGC 2 cut(s) 14, 161
Csp6I GTAC 6 cut(s) 118, 610, 1252, 1282, 1369, 1600
CviQI GTAC 6 cut(s) 118, 610, 1252, 1282, 1369, 1600
DdeI CTNAG 8 cut(s) 150, 394, 459, 642, 672, 1362, 1409, 1488
DpnI GATC 8 cut(s) 9, 148, 363, 471, 618, 677, 789, 1071
DpnII GATC 8 cut(s) 7, 146, 361, 469, 616, 675, 787, 1069
DraI TTTAAA 1 cut(s) 934
DrdI GACNNNNNNGTC 1 cut(s) 1175
DseDI GACNNNNNNGTC 1 cut(s) 1175
EaeI YGGCCR 1 cut(s) 577
Eco130I CCWWGG 3 cut(s) 29, 269, 635
Eco24I GRGCYC 3 cut(s) 313, 393, 1403
Eco31I GGTCTC 2 cut(s) 491, 645
Eco81I CCTNAGG 1 cut(s) 1409
Eco88I CYCGRG 1 cut(s) 134
EcoNI CCTNNNNNAGG 1 cut(s) 166
EcoO109I RGGNCCY 1 cut(s) 1400
EcoRII CCWGG 4 cut(s) 416, 596, 938, 1318
EcoT14I CCWWGG 3 cut(s) 29, 269, 635
EcoT38I GRGCYC 3 cut(s) 313, 393, 1403
ErhI CCWWGG 3 cut(s) 29, 269, 635
FalI AAGNNNNNCTT 4 cut(s) 1176, 1208, 1647, 1679
FaqI GGGAC 1 cut(s) 1019
FauI CCCGC 1 cut(s) 300
FbaI TGATCA 2 cut(s) 361, 1069
FblI GTMKAC 1 cut(s) 1386
FokI GGATG 7 cut(s) 254, 980, 1114, 1229, 1462, 1543, 1646
FriOI GRGCYC 3 cut(s) 313, 393, 1403
GsuI CTGGAG 1 cut(s) 1546
HaeIII GGCC 3 cut(s) 554, 579, 1401
HapII CCGG 1 cut(s) 1397
HgaI GACGC 2 cut(s) 14, 161
Hin1I GRCGYC 1 cut(s) 172
HincII GTYRAC 2 cut(s) 298, 400
HindII GTYRAC 2 cut(s) 298, 400
HindIII AAGCTT 1 cut(s) 1049
HinfI GANTC 5 cut(s) 436, 764, 1288, 1471, 1669
HpaII CCGG 1 cut(s) 1397
HphI GGTGA 3 cut(s) 1154, 1226, 1427
Hpy166II GTNNAC 9 cut(s) 52, 298, 400, 1234, 1252, 1371, 1387, 1600, 1699
Hpy188III TCNNGA 9 cut(s) 365, 791, 812, 997, 1184, 1297, 1408, 1525, 1591
Hpy8I GTNNAC 9 cut(s) 52, 298, 400, 1234, 1252, 1371, 1387, 1600, 1699
Hpy99I CGWCG 1 cut(s) 1449
HpyAV CCTTC 8 cut(s) 118, 196, 503, 892, 1067, 1609, 1614, 1627
HpyCH4III ACNGT 4 cut(s) 427, 478, 547, 761
HpyCH4IV ACGT 1 cut(s) 1176
HpyF10VI GCNNNNNNNGC 3 cut(s) 455, 962, 1655
HpyF3I CTNAG 8 cut(s) 150, 394, 459, 642, 672, 1362, 1409, 1488
HpySE526I ACGT 1 cut(s) 1176
Hsp92I GRCGYC 1 cut(s) 172
Ksp22I TGATCA 2 cut(s) 361, 1069
Kzo9I GATC 8 cut(s) 7, 146, 361, 469, 616, 675, 787, 1069
LmnI GCTCC 2 cut(s) 102, 778
LweI GCATC 3 cut(s) 1095, 1207, 1528
MaeII ACGT 1 cut(s) 1176
MaeIII GTNAC 1 cut(s) 421
MalI GATC 8 cut(s) 9, 148, 363, 471, 618, 677, 789, 1071
MboI GATC 8 cut(s) 7, 146, 361, 469, 616, 675, 787, 1069
MboII GAAGA 5 cut(s) 49, 896, 907, 1528, 1636
MflI RGATCY 2 cut(s) 7, 146
MhlI GDGCHC 4 cut(s) 99, 313, 393, 1403
MluCI AATT 4 cut(s) 65, 357, 504, 1456
MlyI GAGTC 1 cut(s) 1663
MmeI TCCRAC 2 cut(s) 262, 866
MroXI GAANNNNTTC 5 cut(s) 195, 807, 1230, 1440, 1520
MseI TTAA 3 cut(s) 492, 912, 933
MslI CAYNNNNRTG 2 cut(s) 525, 1595
MspI CCGG 1 cut(s) 1397
MspR9I CCNGG 5 cut(s) 418, 598, 940, 1320, 1398
MssI GTTTAAAC 1 cut(s) 934
Mva1269I GAATGC 1 cut(s) 338
MvaI CCWGG 4 cut(s) 418, 598, 940, 1320
MwoI GCNNNNNNNGC 3 cut(s) 455, 962, 1655
NciI CCSGG 1 cut(s) 1398
NcoI CCATGG 2 cut(s) 269, 635
NdeII GATC 8 cut(s) 7, 146, 361, 469, 616, 675, 787, 1069
NlaIV GGNNCC 4 cut(s) 230, 810, 1401, 1402
NmeAIII GCCGAG 4 cut(s) 605, 982, 1675, 1705
NspI RCATGY 2 cut(s) 956, 1192
PaeI GCATGC 1 cut(s) 956
PagI TCATGA 1 cut(s) 1590
PcsI WCGNNNNNNNCGW 2 cut(s) 447, 1173
PctI GAATGC 1 cut(s) 338
PdmI GAANNNNTTC 5 cut(s) 195, 807, 1230, 1440, 1520
PfeI GAWTC 4 cut(s) 436, 764, 1288, 1471
PflMI CCANNNNNTGG 1 cut(s) 1243
PleI GAGTC 1 cut(s) 1663
PmeI GTTTAAAC 1 cut(s) 934
PpsI GAGTC 1 cut(s) 1663
PshBI ATTAAT 1 cut(s) 492
Psp6I CCWGG 4 cut(s) 416, 596, 938, 1318
PspGI CCWGG 4 cut(s) 416, 596, 938, 1318
PspN4I GGNNCC 4 cut(s) 230, 810, 1401, 1402
PspOMI GGGCCC 1 cut(s) 1399
PspPI GGNCC 2 cut(s) 1399, 1400
PstI CTGCAG 1 cut(s) 1562
PsuI RGATCY 2 cut(s) 7, 146
RsaI GTAC 6 cut(s) 119, 611, 1253, 1283, 1370, 1601
RsaNI GTAC 6 cut(s) 118, 610, 1252, 1282, 1369, 1600
RseI CAYNNNNRTG 2 cut(s) 525, 1595
SaqAI TTAA 3 cut(s) 492, 912, 933
Sau3AI GATC 8 cut(s) 7, 146, 361, 469, 616, 675, 787, 1069
Sau96I GGNCC 2 cut(s) 1399, 1400
ScaI AGTACT 1 cut(s) 611
SchI GAGTC 1 cut(s) 1663
ScrFI CCNGG 5 cut(s) 418, 598, 940, 1320, 1398
SduI GDGCHC 4 cut(s) 99, 313, 393, 1403
SfaNI GCATC 3 cut(s) 1095, 1207, 1528
SfcI CTRYAG 1 cut(s) 1558
SmiMI CAYNNNNRTG 2 cut(s) 525, 1595
SmlI CTYRAG 3 cut(s) 1127, 1137, 1664
SmoI CTYRAG 3 cut(s) 1127, 1137, 1664
SphI GCATGC 1 cut(s) 956
Sse9I AATT 4 cut(s) 65, 357, 504, 1456
SsiI CCGC 2 cut(s) 307, 1336
StyD4I CCNGG 5 cut(s) 416, 596, 938, 1318, 1396
StyI CCWWGG 3 cut(s) 29, 269, 635
TaaI ACNGT 4 cut(s) 427, 478, 547, 761
TaiI ACGT 1 cut(s) 1179
TaqI TCGA 1 cut(s) 1444
TaqII GACCGA 1 cut(s) 1643
TasI AATT 4 cut(s) 65, 357, 504, 1456
TatI WGTACW 5 cut(s) 117, 609, 1281, 1368, 1599
TfiI GAWTC 4 cut(s) 436, 764, 1288, 1471
Tru1I TTAA 3 cut(s) 492, 912, 933
Tru9I TTAA 3 cut(s) 492, 912, 933
TscAI CASTG 4 cut(s) 27, 766, 1079, 1701
TspDTI ATGAA 3 cut(s) 170, 204, 1579
TspGWI ACGGA 2 cut(s) 860, 1462
TspRI CASTG 4 cut(s) 27, 766, 1079, 1701
Van91I CCANNNNNTGG 1 cut(s) 1243
VspI ATTAAT 1 cut(s) 492
XagI CCTNNNNNAGG 1 cut(s) 166
XceI RCATGY 2 cut(s) 956, 1192
XmiI GTMKAC 1 cut(s) 1386
XmnI GAANNNNTTC 5 cut(s) 195, 807, 1230, 1440, 1520
ZrmI AGTACT 1 cut(s) 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.