Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8396667.1

Orthogroup ID

OG0009311

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1245

Gene Structure 1245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8396667.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

aagaggaagtgggcctgggttgactttttcgttcaattccgatggattgttgttatctttgttgttctccccatttccttcactatttactttctcacataccttggggatataagatctgaatggaagtcctacaagcagcgtcaaaaggaacatgatgaaaatgttctgaaagttataaaacgcctcaaagaaaggaatccgtcaaaggatggtcttgtttgcacagcacggaagccgtggattgctgttggaatgcggaatgttgactacaagcgagctcgtcattttgaggtcgacttgtctgctttcaggaatgtcctggaaattgatacacagagaaagattgcccgagttgagcccttagtcaacatggggcagatcactagggtaacctgccctttgaatcttgcgcttgctgtggttgcagagtttgatgatcttactgttggtggtctcattaatggttatgggattgaagggagctcccacatctttgggctgttctctgatactgttgtggcttatgaaattgttctagcaaatggccaacttgtcagagccacccaagacaacgagtactctgatcttttctatgctattccatggtctcagggaacattgggccttcttgtcgctgctgagatcaagcttattgacataaaggaatacatgaggttgacatacaaaccagttgtgggaaatctgaaagagattgcacaggcatacagtgattcttttgctcccagatttggtggtctggacgaacctggagccatccctgaaagggttccagagtttgttgaaaccatgatatatactccaaccgaagctgtgtgcatgacaggaagatatgcttcaaaagcagaggccgagatgaaggggaatgtgattaacgaagttgggtggtggtttaaaccctggttctaccaacatgctcagaaagcactgaagaaaggagagtttgtagagtacatcccaaccaggcaatattaccacaggcacactaggagtatctattgggagggaaagcttatccttccatttgctgatcagttttggtttagatttttgttgggctggttgatgccaccaaagatttctctgctcaaggctactcaaggtgaagccataagaaactattaccatgacatgcatgtcattcaagacatgctagttcctctttacaaagttggggatgctttagaatgggttcaccatgagatggaggtaaacatattctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006629 GO:0006694 GO:0006725 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009653 GO:0009698 GO:0009808 GO:0009826 GO:0009832 GO:0009834 GO:0009987 GO:0010817 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0016128 GO:0016129 GO:0016131 GO:0016132 GO:0019748 GO:0031090 GO:0031224 GO:0032502 GO:0032989 GO:0040007 GO:0042445 GO:0042446 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0060560 GO:0065007 GO:0065008 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:0098588 GO:0098805 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 map00100 map01100 map01110

Pfam Domains

Protein Families

FAD_binding_4

Protein Analysis

414

Amino Acids

48.16

Weight (kDa)

8.23

Isoelectric Point (pI)

29.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G19820 AT3G19820 AT3G19820
fragaria_vesca	FvH4_4g36730 FvH4_4g36730 FvH4_4g36730
malus_domestica	MD13G1007700.v1.1 MD16G1000400.v1.1
prunus_persica	Prupe.1G345300_v2.0.a1
pyrus_communis	pycom13g00630 pycom16g00480
rosa_chinensis	RchiOBHm_Chr4g0446441
rosa_laevigata	RLG00000005661
rosa_multiflora	Rmu_co8396667.1_g000001 Rmu_sc0009970.1_g000001
rosa_roxburghii	Rroxscaffold_5G00386880
rosa_rugosa	Rorug04G0371500
rosa_samantha	Rh4AG433000 Rh4BG442200 Rh4CG459500 Rh4DG440900
rosa_wichuraiana	Rw4G036990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	179
AasI	GACNNNNNNGTC	1 cut(s)	1157
Acc36I	ACCTGC	1 cut(s)	404
AccB7I	CCANNNNNTGG	1 cut(s)	1225
AccI	GTMKAC	1 cut(s)	297
AciI	CCGC	1 cut(s)	259
AcoI	YGGCCR	1 cut(s)	547
AcuI	CTGAAG	1 cut(s)	971
AfaI	GTAC	2 cut(s)	581, 974
AfiI	CCNNNNNNNGG	4 cut(s)	698, 752, 787, 1225
AgsI	TTSAA	6 cut(s)	35, 406, 479, 806, 861, 1166
AjnI	CCWGG	5 cut(s)	14, 321, 769, 920, 983
AluBI	AGCT	5 cut(s)	281, 486, 652, 833, 1033
AluI	AGCT	5 cut(s)	281, 486, 652, 833, 1033
Alw21I	GWGCWC	2 cut(s)	283, 488
Alw26I	GTCTC	2 cut(s)	461, 615
Ama87I	CYCGRG	1 cut(s)	351
AoxI	GGCC	4 cut(s)	12, 547, 625, 870
ApeKI	GCWGC	2 cut(s)	139, 638
AseI	ATTAAT	1 cut(s)	462
Asp700I	GAANNNNTTC	4 cut(s)	165, 534, 789, 1212
AspLEI	GCGC	1 cut(s)	415
AspS9I	GGNCC	2 cut(s)	12, 625
AsuHPI	GGTGA	2 cut(s)	1136, 1208
AvaI	CYCGRG	1 cut(s)	351
BaeI	ACNNNNGTAYC	2 cut(s)	504, 537
BalI	TGGCCA	1 cut(s)	549
BanII	GRGCYC	3 cut(s)	283, 363, 488
Bbv12I	GWGCWC	2 cut(s)	283, 488
BbvI	GCAGC	2 cut(s)	151, 625
BccI	CCATC	4 cut(s)	36, 206, 785, 1219
BceAI	ACGGC	1 cut(s)	223
BcgI	CGANNNNNNTGC	2 cut(s)	287, 321
BciT130I	CCWGG	5 cut(s)	16, 323, 771, 922, 985
BclI	TGATCA	1 cut(s)	1051
BcoDI	GTCTC	2 cut(s)	461, 615
BfaI	CTAG	4 cut(s)	387, 539, 1008, 1175
BfuAI	ACCTGC	1 cut(s)	404
BglII	AGATCT	1 cut(s)	116
BisI	GCNGC	2 cut(s)	140, 639
BlsI	GCNGC	2 cut(s)	141, 640
BmcAI	AGTACT	1 cut(s)	581
Bme1390I	CCNGG	5 cut(s)	16, 323, 771, 922, 985
BmeT110I	CYCGRG	1 cut(s)	351
BmgT120I	GGNCC	2 cut(s)	12, 625
BmiI	GGNNCC	2 cut(s)	775, 792
BmrFI	CCNGG	5 cut(s)	16, 323, 771, 922, 985
BmsI	GCATC	2 cut(s)	1077, 1189
BpmI	CTGGAG	1 cut(s)	792
BpuEI	CTTGAG	2 cut(s)	1094, 1104
BsaI	GGTCTC	2 cut(s)	461, 615
BsaJI	CCNNGG	5 cut(s)	15, 103, 239, 605, 920
BsaXI	ACNNNNNCTCC	2 cut(s)	951, 981
Bsc4I	CCNNNNNNNGG	4 cut(s)	698, 752, 787, 1225
Bse1I	ACTGG	1 cut(s)	692
BseBI	CCWGG	5 cut(s)	16, 323, 771, 922, 985
BseDI	CCNNGG	5 cut(s)	15, 103, 239, 605, 920
BseGI	GGATG	4 cut(s)	217, 777, 975, 1204
BseLI	CCNNNNNNNGG	4 cut(s)	698, 752, 787, 1225
BseMII	CTCAG	3 cut(s)	626, 633, 953
BseNI	ACTGG	1 cut(s)	692
BseXI	GCAGC	2 cut(s)	151, 625
BshFI	GGCC	4 cut(s)	14, 549, 627, 872
BsiHKAI	GWGCWC	2 cut(s)	283, 488
BsiHKCI	CYCGRG	1 cut(s)	351
BslI	CCNNNNNNNGG	4 cut(s)	698, 752, 787, 1225
BsmAI	GTCTC	2 cut(s)	461, 615
BsmI	GAATGC	1 cut(s)	261
BsnI	GGCC	4 cut(s)	14, 549, 627, 872
Bso31I	GGTCTC	2 cut(s)	461, 615
BsoBI	CYCGRG	1 cut(s)	351
Bsp1286I	GDGCHC	3 cut(s)	283, 363, 488
Bsp143I	GATC	6 cut(s)	116, 381, 439, 586, 645, 1051
Bsp19I	CCATGG	1 cut(s)	605
BspACI	CCGC	1 cut(s)	259
BspANI	GGCC	4 cut(s)	14, 549, 627, 872
BspCNI	CTCAG	3 cut(s)	625, 634, 952
BspLI	GGNNCC	2 cut(s)	775, 792
BspMI	ACCTGC	1 cut(s)	404
BspTNI	GGTCTC	2 cut(s)	461, 615
BsrI	ACTGG	1 cut(s)	692
BssECI	CCNNGG	5 cut(s)	15, 103, 239, 605, 920
BssMI	GATC	6 cut(s)	116, 381, 439, 586, 645, 1051
BssT1I	CCWWGG	2 cut(s)	103, 605
Bst2UI	CCWGG	5 cut(s)	16, 323, 771, 922, 985
Bst4CI	ACNGT	3 cut(s)	448, 517, 731
BstC8I	GCNNGC	2 cut(s)	279, 417
BstDEI	CTNAG	4 cut(s)	364, 612, 642, 939
BstDSI	CCRYGG	2 cut(s)	239, 605
BstEII	GGTNACC	1 cut(s)	391
BstF5I	GGATG	4 cut(s)	217, 777, 975, 1204
BstHHI	GCGC	1 cut(s)	415
BstKTI	GATC	6 cut(s)	119, 384, 442, 589, 648, 1054
BstMAI	GTCTC	2 cut(s)	461, 615
BstMBI	GATC	6 cut(s)	116, 381, 439, 586, 645, 1051
BstMWI	GCNNNNNNNGC	3 cut(s)	425, 863, 944
BstNI	CCWGG	5 cut(s)	16, 323, 771, 922, 985
BstNSI	RCATGY	4 cut(s)	938, 1156, 1160, 1174
BstPI	GGTNACC	1 cut(s)	391
BstSCI	CCNGG	5 cut(s)	14, 321, 769, 920, 983
BstV1I	GCAGC	2 cut(s)	151, 625
BstX2I	RGATCY	1 cut(s)	116
BstXI	CCANNNNNNTGG	1 cut(s)	497
BstYI	RGATCY	1 cut(s)	116
BsuRI	GGCC	4 cut(s)	14, 549, 627, 872
BtgI	CCRYGG	2 cut(s)	239, 605
BtsCI	GGATG	4 cut(s)	217, 777, 975, 1204
BtsIMutI	CAGTG	2 cut(s)	736, 947
BveI	ACCTGC	1 cut(s)	404
Cac8I	GCNNGC	2 cut(s)	279, 417
CfoI	GCGC	1 cut(s)	415
Cfr13I	GGNCC	2 cut(s)	12, 625
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	2 cut(s)	580, 973
CviQI	GTAC	2 cut(s)	580, 973
DdeI	CTNAG	4 cut(s)	364, 612, 642, 939
DpnI	GATC	6 cut(s)	118, 383, 441, 588, 647, 1053
DpnII	GATC	6 cut(s)	116, 381, 439, 586, 645, 1051
DraI	TTTAAA	1 cut(s)	916
DrdI	GACNNNNNNGTC	1 cut(s)	1157
DseDI	GACNNNNNNGTC	1 cut(s)	1157
EaeI	YGGCCR	1 cut(s)	547
Ecl136II	GAGCTC	2 cut(s)	281, 486
Eco130I	CCWWGG	2 cut(s)	103, 605
Eco24I	GRGCYC	3 cut(s)	283, 363, 488
Eco31I	GGTCTC	2 cut(s)	461, 615
Eco53kI	GAGCTC	2 cut(s)	281, 486
Eco57I	CTGAAG	1 cut(s)	971
Eco88I	CYCGRG	1 cut(s)	351
Eco91I	GGTNACC	1 cut(s)	391
EcoICRI	GAGCTC	2 cut(s)	281, 486
EcoO65I	GGTNACC	1 cut(s)	391
EcoRII	CCWGG	5 cut(s)	14, 321, 769, 920, 983
EcoT14I	CCWWGG	2 cut(s)	103, 605
EcoT22I	ATGCAT	1 cut(s)	1158
EcoT38I	GRGCYC	3 cut(s)	283, 363, 488
ErhI	CCWWGG	2 cut(s)	103, 605
FalI	AAGNNNNNCTT	2 cut(s)	841, 873
FbaI	TGATCA	1 cut(s)	1051
FblI	GTMKAC	1 cut(s)	297
Fnu4HI	GCNGC	2 cut(s)	140, 639
FokI	GGATG	4 cut(s)	224, 764, 962, 1211
FriOI	GRGCYC	3 cut(s)	283, 363, 488
Fsp4HI	GCNGC	2 cut(s)	140, 639
FspBI	CTAG	4 cut(s)	387, 539, 1008, 1175
GlaI	GCGC	1 cut(s)	414
GluI	GCNGC	2 cut(s)	140, 639
GsuI	CTGGAG	1 cut(s)	792
HaeIII	GGCC	4 cut(s)	14, 549, 627, 872
HgaI	GACGC	1 cut(s)	131
HhaI	GCGC	1 cut(s)	415
Hin6I	GCGC	1 cut(s)	413
HinP1I	GCGC	1 cut(s)	413
HincII	GTYRAC	5 cut(s)	22, 268, 298, 370, 681
HindII	GTYRAC	5 cut(s)	22, 268, 298, 370, 681
HindIII	AAGCTT	2 cut(s)	650, 1031
HinfI	GANTC	3 cut(s)	199, 406, 734
HphI	GGTGA	2 cut(s)	1136, 1208
Hpy166II	GTNNAC	7 cut(s)	22, 268, 298, 370, 681, 1216, 1234
Hpy188I	TCNGA	9 cut(s)	41, 121, 171, 511, 560, 586, 708, 942, 1244
Hpy188III	TCNNGA	4 cut(s)	313, 761, 794, 1166
Hpy8I	GTNNAC	7 cut(s)	22, 268, 298, 370, 681, 1216, 1234
HpyAV	CCTTC	5 cut(s)	88, 473, 638, 874, 1049
HpyCH4III	ACNGT	3 cut(s)	448, 517, 731
HpyCH4V	TGCA	5 cut(s)	225, 428, 719, 840, 1156
HpyF10VI	GCNNNNNNNGC	3 cut(s)	425, 863, 944
HpyF3I	CTNAG	4 cut(s)	364, 612, 642, 939
HspAI	GCGC	1 cut(s)	413
Ksp22I	TGATCA	1 cut(s)	1051
Kzo9I	GATC	6 cut(s)	116, 381, 439, 586, 645, 1051
LmnI	GCTCC	4 cut(s)	483, 491, 748, 773
Lsp1109I	GCAGC	2 cut(s)	151, 625
LweI	GCATC	2 cut(s)	1077, 1189
MaeI	CTAG	4 cut(s)	387, 539, 1008, 1175
MaeIII	GTNAC	1 cut(s)	391
MalI	GATC	6 cut(s)	118, 383, 441, 588, 647, 1053
MboI	GATC	6 cut(s)	116, 381, 439, 586, 645, 1051
MboII	GAAGA	2 cut(s)	861, 964
MflI	RGATCY	1 cut(s)	116
MhlI	GDGCHC	3 cut(s)	283, 363, 488
MlsI	TGGCCA	1 cut(s)	549
MluCI	AATT	3 cut(s)	35, 327, 531
MluNI	TGGCCA	1 cut(s)	549
MmeI	TCCRAC	2 cut(s)	232, 848
MnlI	CCTC	7 cut(s)	197, 286, 669, 862, 1018, 1191, 1222
Mox20I	TGGCCA	1 cut(s)	549
Mph1103I	ATGCAT	1 cut(s)	1158
MroXI	GAANNNNTTC	4 cut(s)	165, 534, 789, 1212
MscI	TGGCCA	1 cut(s)	549
MseI	TTAA	3 cut(s)	462, 894, 915
Msp20I	TGGCCA	1 cut(s)	549
MspR9I	CCNGG	5 cut(s)	16, 323, 771, 922, 985
MssI	GTTTAAAC	1 cut(s)	916
Mva1269I	GAATGC	1 cut(s)	261
MvaI	CCWGG	5 cut(s)	16, 323, 771, 922, 985
MwoI	GCNNNNNNNGC	3 cut(s)	425, 863, 944
NcoI	CCATGG	1 cut(s)	605
NdeII	GATC	6 cut(s)	116, 381, 439, 586, 645, 1051
NlaIV	GGNNCC	2 cut(s)	775, 792
NmeAIII	GCCGAG	1 cut(s)	898
NsiI	ATGCAT	1 cut(s)	1158
NspI	RCATGY	4 cut(s)	938, 1156, 1160, 1174
PctI	GAATGC	1 cut(s)	261
PdmI	GAANNNNTTC	4 cut(s)	165, 534, 789, 1212
PfeI	GAWTC	3 cut(s)	199, 406, 734
PflMI	CCANNNNNTGG	1 cut(s)	1225
PfoI	TCCNGGA	1 cut(s)	321
PkrI	GCNGC	2 cut(s)	141, 640
PmeI	GTTTAAAC	1 cut(s)	916
PshBI	ATTAAT	1 cut(s)	462
PsiI	TTATAA	1 cut(s)	179
Psp124BI	GAGCTC	2 cut(s)	283, 488
Psp6I	CCWGG	5 cut(s)	14, 321, 769, 920, 983
PspEI	GGTNACC	1 cut(s)	391
PspGI	CCWGG	5 cut(s)	14, 321, 769, 920, 983
PspN4I	GGNNCC	2 cut(s)	775, 792
PspPI	GGNCC	2 cut(s)	12, 625
PsuI	RGATCY	1 cut(s)	116
RsaI	GTAC	2 cut(s)	581, 974
RsaNI	GTAC	2 cut(s)	580, 973
SacI	GAGCTC	2 cut(s)	283, 488
SalI	GTCGAC	1 cut(s)	296
SaqAI	TTAA	3 cut(s)	462, 894, 915
SatI	GCNGC	2 cut(s)	140, 639
Sau3AI	GATC	6 cut(s)	116, 381, 439, 586, 645, 1051
Sau96I	GGNCC	2 cut(s)	12, 625
ScaI	AGTACT	1 cut(s)	581
ScrFI	CCNGG	5 cut(s)	16, 323, 771, 922, 985
SduI	GDGCHC	3 cut(s)	283, 363, 488
SfaNI	GCATC	2 cut(s)	1077, 1189
SmlI	CTYRAG	2 cut(s)	1109, 1119
SmoI	CTYRAG	2 cut(s)	1109, 1119
Sse9I	AATT	3 cut(s)	35, 327, 531
SsiI	CCGC	1 cut(s)	259
SspI	AATATT	1 cut(s)	992
SspMI	CTAG	4 cut(s)	387, 539, 1008, 1175
SstI	GAGCTC	2 cut(s)	283, 488
StyD4I	CCNGG	5 cut(s)	14, 321, 769, 920, 983
StyI	CCWWGG	2 cut(s)	103, 605
TaaI	ACNGT	3 cut(s)	448, 517, 731
TaqI	TCGA	1 cut(s)	297
TasI	AATT	3 cut(s)	35, 327, 531
TatI	WGTACW	2 cut(s)	579, 972
TfiI	GAWTC	3 cut(s)	199, 406, 734
Tru1I	TTAA	3 cut(s)	462, 894, 915
Tru9I	TTAA	3 cut(s)	462, 894, 915
TscAI	CASTG	2 cut(s)	736, 954
TseI	GCWGC	2 cut(s)	139, 638
TspDTI	ATGAA	3 cut(s)	174, 543, 893
TspGWI	ACGGA	2 cut(s)	192, 247
TspRI	CASTG	2 cut(s)	736, 954
Van91I	CCANNNNNTGG	1 cut(s)	1225
VspI	ATTAAT	1 cut(s)	462
XceI	RCATGY	4 cut(s)	938, 1156, 1160, 1174
XmiI	GTMKAC	1 cut(s)	297
XmnI	GAANNNNTTC	4 cut(s)	165, 534, 789, 1212
XspI	CTAG	4 cut(s)	387, 539, 1008, 1175
ZrmI	AGTACT	1 cut(s)	581
Zsp2I	ATGCAT	1 cut(s)	1158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.