MD16G1048200.v1.1

DVL family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0019558
Physical Location & Seq
Forward (+)
3371720 .. 3371872
153 bp
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UTR
Exon/CDS
Intron
MD16G1048200.v1.1.491

Sequence Viewer

Length: 153 bp
ATGAAGATGGGCAGCTCTGGCAGCATGGCAGGCAGCAAGAGAAGGTTGTCTTCGTCGTCAAGCAAAGGACTCGGAGGGGTCCTGCGAGAGCAAAGAGCCAGGCTTTACATCATCAGGAGGTGTGTGGTCATGCTCCTCTGCTGGCATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DVL

Protein Analysis

51

Amino Acids

5.56

Weight (kDa)

11.31

Isoelectric Point (pI)

83.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DVL PF08137 29 - 47 3.9e-12 DVL family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019558)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13245 AT1G68825 AT1G68825 AT3G25717
malus_domestica MD13G1046500.v1.1 MD16G1048200.v1.1
prunus_persica Prupe.1G305400_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AjnI CCWGG 1 cut(s) 98
AluBI AGCT 1 cut(s) 15
AluI AGCT 1 cut(s) 15
ApeKI GCWGC 3 cut(s) 12, 21, 33
AspS9I GGNCC 1 cut(s) 79
AvaII GGWCC 1 cut(s) 79
BbsI GAAGAC 1 cut(s) 42
BbvI GCAGC 3 cut(s) 24, 33, 45
BcgI CGANNNNNNTGC 2 cut(s) 52, 86
BciT130I CCWGG 1 cut(s) 100
BisI GCNGC 3 cut(s) 13, 22, 34
BlsI GCNGC 3 cut(s) 14, 23, 35
Bme1390I CCNGG 1 cut(s) 100
Bme18I GGWCC 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 79
BmiI GGNNCC 1 cut(s) 80
BmrFI CCNGG 1 cut(s) 100
BpiI GAAGAC 1 cut(s) 42
BseBI CCWGG 1 cut(s) 100
BseRI GAGGAG 1 cut(s) 125
BseXI GCAGC 3 cut(s) 24, 33, 45
BspLI GGNNCC 1 cut(s) 80
Bst2UI CCWGG 1 cut(s) 100
BstC8I GCNNGC 2 cut(s) 31, 143
BstMWI GCNNNNNNNGC 3 cut(s) 18, 21, 30
BstNI CCWGG 1 cut(s) 100
BstSCI CCNGG 1 cut(s) 98
BstV1I GCAGC 3 cut(s) 24, 33, 45
BstV2I GAAGAC 1 cut(s) 42
Cac8I GCNNGC 2 cut(s) 31, 143
Cfr13I GGNCC 1 cut(s) 79
CviAII CATG 3 cut(s) 25, 130, 146
CviJI RGCY 3 cut(s) 15, 98, 103
CviKI_1 RGCY 3 cut(s) 15, 98, 103
Eco47I GGWCC 1 cut(s) 79
EcoO109I RGGNCCY 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 98
FaeI CATG 3 cut(s) 28, 133, 149
FaiI YATR 3 cut(s) 26, 131, 147
FalI AAGNNNNNCTT 2 cut(s) 34, 66
FatI CATG 3 cut(s) 24, 129, 145
Fnu4HI GCNGC 3 cut(s) 13, 22, 34
Fsp4HI GCNGC 3 cut(s) 13, 22, 34
GluI GCNGC 3 cut(s) 13, 22, 34
Hin1II CATG 3 cut(s) 28, 133, 149
HinfI GANTC 1 cut(s) 69
Hpy188I TCNGA 1 cut(s) 74
Hpy188III TCNNGA 1 cut(s) 115
Hpy99I CGWCG 1 cut(s) 58
HpyAV CCTTC 1 cut(s) 36
HpyF10VI GCNNNNNNNGC 3 cut(s) 18, 21, 30
Hsp92II CATG 3 cut(s) 28, 133, 149
LmnI GCTCC 1 cut(s) 138
LpnPI CCDG 7 cut(s) 3, 15, 85, 95, 100, 112, 127
Lsp1109I GCAGC 3 cut(s) 24, 33, 45
MboII GAAGA 2 cut(s) 16, 42
MlyI GAGTC 1 cut(s) 63
MnlI CCTC 3 cut(s) 68, 111, 146
MspR9I CCNGG 1 cut(s) 100
MvaI CCWGG 1 cut(s) 100
MwoI GCNNNNNNNGC 3 cut(s) 18, 21, 30
NlaIII CATG 3 cut(s) 28, 133, 149
NlaIV GGNNCC 1 cut(s) 80
PkrI GCNGC 3 cut(s) 14, 23, 35
PleI GAGTC 1 cut(s) 63
PpsI GAGTC 1 cut(s) 63
PpuMI RGGWCCY 1 cut(s) 79
Psp5II RGGWCCY 1 cut(s) 79
Psp6I CCWGG 1 cut(s) 98
PspGI CCWGG 1 cut(s) 98
PspN4I GGNNCC 1 cut(s) 80
PspPI GGNCC 1 cut(s) 79
PspPPI RGGWCCY 1 cut(s) 79
SatI GCNGC 3 cut(s) 13, 22, 34
Sau96I GGNCC 1 cut(s) 79
SchI GAGTC 1 cut(s) 63
ScrFI CCNGG 1 cut(s) 100
SetI ASST 3 cut(s) 17, 47, 122
SinI GGWCC 1 cut(s) 79
StyD4I CCNGG 1 cut(s) 98
TseI GCWGC 3 cut(s) 12, 21, 33
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.