Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0024355

Physical Location & Seq

Genomic Coordinates Reverse (-)

8071797 .. 8072096

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1114300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGCTCCGAAGCTCTTTCTCTCTCTTTCTCTCTACCGAGACGTACAGACCTTATCAAAATCTCCAATGGCAACGAATATTGATATGATGGACGGCGCTGACTTCATAGGCAGGACCGAGGTCTTGGCCTGGATCAACTTAACTCTCAATCTCAATCTCAACAAAGTCGAAGAGGCATGTTCCAGTGCTGTTCACTGCCAACTCATGGATGCCGTTGTTAACGGTATCGTGCCAATGCACAAGGTCAATTTTCATGCCAATAGCGAGTACGAGATGATTCAGAACTACAATGTCCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0001932 GO:0001934 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0006355 GO:0006996 GO:0007010 GO:0008017 GO:0008022 GO:0008092 GO:0008104 GO:0008150 GO:0009524 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009652 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0015630 GO:0015631 GO:0016043 GO:0019219 GO:0019220 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0030312 GO:0030496 GO:0030865 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0033036 GO:0033674 GO:0042325 GO:0042327 GO:0042802 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043549 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0048471 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0071840 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CH EB1

Protein Analysis

100

Amino Acids

11.1

Weight (kDa)

5.1

Isoelectric Point (pI)

32.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024355)

Species	Orthologous Gene IDs
malus_domestica	MD16G1114300.v1.1
pyrus_communis	pycom15g25200
rosa_multiflora	Rmu_sc0004352.1_g000005

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	205
AclWI	GGATC	1 cut(s)	140
AfaI	GTAC	2 cut(s)	45, 269
AfiI	CCNNNNNNNGG	1 cut(s)	205
AjnI	CCWGG	1 cut(s)	128
AluBI	AGCT	1 cut(s)	13
AluI	AGCT	1 cut(s)	13
Alw26I	GTCTC	1 cut(s)	33
AlwI	GGATC	1 cut(s)	140
AoxI	GGCC	1 cut(s)	126
AspLEI	GCGC	1 cut(s)	98
AspS9I	GGNCC	1 cut(s)	114
AvaII	GGWCC	1 cut(s)	114
BccI	CCATC	1 cut(s)	82
BceAI	ACGGC	2 cut(s)	109, 197
BciT130I	CCWGG	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	33
BfoI	RGCGCY	1 cut(s)	99
Bme1390I	CCNGG	1 cut(s)	130
Bme18I	GGWCC	1 cut(s)	114
BmgT120I	GGNCC	1 cut(s)	114
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	130
BmsI	GCATC	1 cut(s)	199
BoxI	GACNNNNGTC	1 cut(s)	119
BsaJI	CCNNGG	1 cut(s)	117
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
Bse1I	ACTGG	1 cut(s)	183
BseBI	CCWGG	1 cut(s)	130
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseNI	ACTGG	1 cut(s)	183
BshFI	GGCC	1 cut(s)	128
BslI	CCNNNNNNNGG	1 cut(s)	205
BsmAI	GTCTC	1 cut(s)	33
BsmBI	CGTCTC	1 cut(s)	33
BsnI	GGCC	1 cut(s)	128
Bsp143I	GATC	1 cut(s)	132
BspANI	GGCC	1 cut(s)	128
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	183
BssECI	CCNNGG	1 cut(s)	117
BssMI	GATC	1 cut(s)	132
Bst2UI	CCWGG	1 cut(s)	130
Bst4CI	ACNGT	1 cut(s)	224
Bst6I	CTCTTC	1 cut(s)	165
BstF5I	GGATG	1 cut(s)	214
BstH2I	RGCGCY	1 cut(s)	99
BstHHI	GCGC	1 cut(s)	98
BstKTI	GATC	1 cut(s)	135
BstMAI	GTCTC	1 cut(s)	33
BstMBI	GATC	1 cut(s)	132
BstNI	CCWGG	1 cut(s)	130
BstNSI	RCATGY	1 cut(s)	180
BstPAI	GACNNNNGTC	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	128
BsuRI	GGCC	1 cut(s)	128
BtsCI	GGATG	1 cut(s)	214
BtsI	GCAGTG	1 cut(s)	193
BtsIMutI	CAGTG	2 cut(s)	190, 193
CfoI	GCGC	1 cut(s)	98
Cfr13I	GGNCC	1 cut(s)	114
Csp6I	GTAC	2 cut(s)	44, 268
CviAII	CATG	3 cut(s)	177, 205, 254
CviJI	RGCY	3 cut(s)	5, 13, 128
CviKI_1	RGCY	3 cut(s)	5, 13, 128
CviQI	GTAC	2 cut(s)	44, 268
DpnI	GATC	1 cut(s)	134
DpnII	GATC	1 cut(s)	132
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
Eco47I	GGWCC	1 cut(s)	114
EcoRII	CCWGG	1 cut(s)	128
Esp3I	CGTCTC	1 cut(s)	33
FaeI	CATG	3 cut(s)	180, 208, 257
FaiI	YATR	5 cut(s)	86, 107, 178, 206, 255
FatI	CATG	3 cut(s)	176, 204, 253
FokI	GGATG	1 cut(s)	221
GlaI	GCGC	1 cut(s)	97
HaeII	RGCGCY	1 cut(s)	99
HaeIII	GGCC	1 cut(s)	128
HhaI	GCGC	1 cut(s)	98
Hin1II	CATG	3 cut(s)	180, 208, 257
Hin6I	GCGC	1 cut(s)	96
HinP1I	GCGC	1 cut(s)	96
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	1 cut(s)	277
HpaI	GTTAAC	1 cut(s)	220
Hpy166II	GTNNAC	2 cut(s)	193, 220
Hpy188I	TCNGA	2 cut(s)	9, 282
Hpy8I	GTNNAC	2 cut(s)	193, 220
HpyCH4III	ACNGT	1 cut(s)	224
HpyCH4IV	ACGT	1 cut(s)	42
HpyCH4V	TGCA	1 cut(s)	238
HpySE526I	ACGT	1 cut(s)	42
Hsp92II	CATG	3 cut(s)	180, 208, 257
HspAI	GCGC	1 cut(s)	96
KspAI	GTTAAC	1 cut(s)	220
Kzo9I	GATC	1 cut(s)	132
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	4 cut(s)	97, 115, 142, 196
LweI	GCATC	1 cut(s)	199
MaeII	ACGT	1 cut(s)	42
MalI	GATC	1 cut(s)	134
MboI	GATC	1 cut(s)	132
MboII	GAAGA	1 cut(s)	182
MluCI	AATT	1 cut(s)	247
MnlI	CCTC	2 cut(s)	112, 166
MseI	TTAA	2 cut(s)	140, 219
MspR9I	CCNGG	1 cut(s)	130
MvaI	CCWGG	1 cut(s)	130
NdeII	GATC	1 cut(s)	132
NlaIII	CATG	3 cut(s)	180, 208, 257
NlaIV	GGNNCC	1 cut(s)	6
NspI	RCATGY	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	277
PflMI	CCANNNNNTGG	1 cut(s)	205
PshAI	GACNNNNGTC	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	128
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	114
RsaI	GTAC	2 cut(s)	45, 269
RsaNI	GTAC	2 cut(s)	44, 268
SaqAI	TTAA	2 cut(s)	140, 219
Sau3AI	GATC	1 cut(s)	132
Sau96I	GGNCC	1 cut(s)	114
ScrFI	CCNGG	1 cut(s)	130
SetI	ASST	5 cut(s)	15, 45, 53, 123, 246
SfaNI	GCATC	1 cut(s)	199
SinI	GGWCC	1 cut(s)	114
Sse9I	AATT	1 cut(s)	247
SspI	AATATT	1 cut(s)	79
StyD4I	CCNGG	1 cut(s)	128
TaaI	ACNGT	1 cut(s)	224
TaiI	ACGT	1 cut(s)	45
TaqI	TCGA	1 cut(s)	168
TaqII	GACCGA	1 cut(s)	131
TasI	AATT	1 cut(s)	247
TfiI	GAWTC	1 cut(s)	277
Tru1I	TTAA	2 cut(s)	140, 219
Tru9I	TTAA	2 cut(s)	140, 219
TscAI	CASTG	2 cut(s)	190, 200
TspDTI	ATGAA	2 cut(s)	94, 242
TspRI	CASTG	2 cut(s)	190, 200
Van91I	CCANNNNNTGG	1 cut(s)	205
VpaK11BI	GGWCC	1 cut(s)	114
XceI	RCATGY	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.