Rmu_sc0004352.1_g000005

Microtubule-associated protein RP EB family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004352.1
OG0024355
Physical Location & Seq
Forward (+)
16641 .. 17023
383 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004352.1_g000005.1.cds

Sequence Viewer

Length: 276 bp
atggcgacgaatatcggcatgatggacggcgcgtacttcgtcggcagatctgagatcttggcctggatcaactccactctccaactccatctcaacaaagtcgaagaggcgtgttccggcgcggtccactgccagctcatggacgcggctcatccggggatggttccgatgcacaaggtcaattttgacgccaagagcgagtatgagatgatccagaactataaggttcttcaagatgtcttcaacaaactcaaaattaccaaggtccgttttcaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000079 GO:0001932 GO:0001934 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005819 GO:0005856 GO:0006355 GO:0006996 GO:0007010 GO:0008017 GO:0008022 GO:0008092 GO:0008104 GO:0008150 GO:0009524 GO:0009605 GO:0009606 GO:0009612 GO:0009628 GO:0009652 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010628 GO:0015630 GO:0015631 GO:0016043 GO:0019219 GO:0019220 GO:0019222 GO:0019899 GO:0019900 GO:0019901 GO:0030312 GO:0030496 GO:0030865 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0033036 GO:0033674 GO:0042325 GO:0042327 GO:0042802 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043549 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045737 GO:0045787 GO:0045859 GO:0045860 GO:0045893 GO:0045935 GO:0045937 GO:0048471 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0051338 GO:0051347 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0070013 GO:0071840 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:1904029 GO:1904031 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CH EB1

Protein Analysis

92

Amino Acids

10.45

Weight (kDa)

6.89

Isoelectric Point (pI)

47.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024355)

Species Orthologous Gene IDs
malus_domestica MD16G1114300.v1.1
pyrus_communis pycom15g25200
rosa_multiflora Rmu_sc0004352.1_g000005

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 139
AccII CGCG 3 cut(s) 32, 122, 146
AciI CCGC 2 cut(s) 122, 146
AclWI GGATC 2 cut(s) 74, 205
AcyI GRCGYC 1 cut(s) 189
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 1 cut(s) 139
AgsI TTSAA 3 cut(s) 233, 244, 275
AjnI CCWGG 1 cut(s) 62
AluBI AGCT 1 cut(s) 136
AluI AGCT 1 cut(s) 136
AlwI GGATC 2 cut(s) 74, 205
AoxI GGCC 1 cut(s) 60
AspLEI GCGC 2 cut(s) 32, 122
AspS9I GGNCC 2 cut(s) 124, 265
AsuC2I CCSGG 1 cut(s) 156
AvaII GGWCC 2 cut(s) 124, 265
BbsI GAAGAC 1 cut(s) 232
BccI CCATC 3 cut(s) 16, 96, 154
BceAI ACGGC 1 cut(s) 43
BciT130I CCWGG 1 cut(s) 64
BcnI CCSGG 1 cut(s) 156
BglII AGATCT 2 cut(s) 47, 54
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
Bme1390I CCNGG 2 cut(s) 64, 156
Bme18I GGWCC 2 cut(s) 124, 265
BmgT120I GGNCC 2 cut(s) 124, 265
BmiI GGNNCC 1 cut(s) 165
BmrFI CCNGG 2 cut(s) 64, 156
BmsI GCATC 1 cut(s) 159
BpiI GAAGAC 1 cut(s) 232
BpuMI CCSGG 1 cut(s) 156
BsaHI GRCGYC 1 cut(s) 189
BsaJI CCNNGG 2 cut(s) 155, 261
Bsc4I CCNNNNNNNGG 1 cut(s) 139
BseBI CCWGG 1 cut(s) 64
BseDI CCNNGG 2 cut(s) 155, 261
BseGI GGATG 2 cut(s) 151, 165
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMII CTCAG 1 cut(s) 42
Bsh1236I CGCG 3 cut(s) 32, 122, 146
BshFI GGCC 1 cut(s) 62
BsiSI CCGG 2 cut(s) 117, 155
BslI CCNNNNNNNGG 1 cut(s) 139
BsnI GGCC 1 cut(s) 62
Bsp143I GATC 4 cut(s) 47, 54, 66, 210
BspACI CCGC 2 cut(s) 122, 146
BspANI GGCC 1 cut(s) 62
BspCNI CTCAG 1 cut(s) 43
BspFNI CGCG 3 cut(s) 32, 122, 146
BspLI GGNNCC 1 cut(s) 165
BspPI GGATC 2 cut(s) 74, 205
BssECI CCNNGG 2 cut(s) 155, 261
BssMI GATC 4 cut(s) 47, 54, 66, 210
BssNI GRCGYC 1 cut(s) 189
BssT1I CCWWGG 1 cut(s) 261
Bst2UI CCWGG 1 cut(s) 64
Bst6I CTCTTC 1 cut(s) 99
BstACI GRCGYC 1 cut(s) 189
BstC8I GCNNGC 1 cut(s) 134
BstDEI CTNAG 1 cut(s) 51
BstF5I GGATG 2 cut(s) 151, 165
BstFNI CGCG 3 cut(s) 32, 122, 146
BstHHI GCGC 2 cut(s) 32, 122
BstKTI GATC 4 cut(s) 50, 57, 69, 213
BstMBI GATC 4 cut(s) 47, 54, 66, 210
BstNI CCWGG 1 cut(s) 64
BstSCI CCNGG 2 cut(s) 62, 154
BstUI CGCG 3 cut(s) 32, 122, 146
BstV2I GAAGAC 1 cut(s) 232
BstX2I RGATCY 2 cut(s) 47, 54
BstYI RGATCY 2 cut(s) 47, 54
BsuRI GGCC 1 cut(s) 62
BtsCI GGATG 2 cut(s) 151, 165
BtsI GCAGTG 1 cut(s) 127
BtsIMutI CAGTG 1 cut(s) 127
Cac8I GCNNGC 1 cut(s) 134
CfoI GCGC 2 cut(s) 32, 122
Cfr13I GGNCC 2 cut(s) 124, 265
CseI GACGC 2 cut(s) 152, 197
Csp6I GTAC 1 cut(s) 34
CviAII CATG 2 cut(s) 19, 139
CviJI RGCY 3 cut(s) 62, 136, 149
CviKI_1 RGCY 3 cut(s) 62, 136, 149
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 1 cut(s) 51
DpnI GATC 4 cut(s) 49, 56, 68, 212
DpnII GATC 4 cut(s) 47, 54, 66, 210
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
Eco130I CCWWGG 1 cut(s) 261
Eco47I GGWCC 2 cut(s) 124, 265
EcoRII CCWGG 1 cut(s) 62
EcoT14I CCWWGG 1 cut(s) 261
ErhI CCWWGG 1 cut(s) 261
FaeI CATG 2 cut(s) 22, 142
FaiI YATR 4 cut(s) 20, 140, 204, 222
FatI CATG 2 cut(s) 18, 138
Fnu4HI GCNGC 1 cut(s) 147
FokI GGATG 2 cut(s) 138, 172
Fsp4HI GCNGC 1 cut(s) 147
GlaI GCGC 2 cut(s) 31, 121
GluI GCNGC 1 cut(s) 147
HaeIII GGCC 1 cut(s) 62
HapII CCGG 2 cut(s) 117, 155
HgaI GACGC 2 cut(s) 152, 197
HhaI GCGC 2 cut(s) 32, 122
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 2 cut(s) 22, 142
Hin6I GCGC 2 cut(s) 30, 120
HinP1I GCGC 2 cut(s) 30, 120
HpaII CCGG 2 cut(s) 117, 155
Hpy166II GTNNAC 1 cut(s) 127
Hpy188I TCNGA 2 cut(s) 52, 168
Hpy188III TCNNGA 2 cut(s) 214, 233
Hpy8I GTNNAC 1 cut(s) 127
Hpy99I CGWCG 2 cut(s) 10, 44
HpyCH4V TGCA 1 cut(s) 172
HpyF3I CTNAG 1 cut(s) 51
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 2 cut(s) 22, 142
HspAI GCGC 2 cut(s) 30, 120
Kzo9I GATC 4 cut(s) 47, 54, 66, 210
LpnPI CCDG 6 cut(s) 49, 76, 130, 146, 168, 227
LweI GCATC 1 cut(s) 159
MalI GATC 4 cut(s) 49, 56, 68, 212
MboI GATC 4 cut(s) 47, 54, 66, 210
MboII GAAGA 3 cut(s) 116, 221, 232
MflI RGATCY 2 cut(s) 47, 54
MluCI AATT 2 cut(s) 181, 255
MmeI TCCRAC 1 cut(s) 106
MnlI CCTC 1 cut(s) 100
MspI CCGG 2 cut(s) 117, 155
MspR9I CCNGG 2 cut(s) 64, 156
MvaI CCWGG 1 cut(s) 64
MvnI CGCG 3 cut(s) 32, 122, 146
NciI CCSGG 1 cut(s) 156
NdeII GATC 4 cut(s) 47, 54, 66, 210
NlaIII CATG 2 cut(s) 22, 142
NlaIV GGNNCC 1 cut(s) 165
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PflMI CCANNNNNTGG 1 cut(s) 139
PkrI GCNGC 1 cut(s) 148
Psp6I CCWGG 1 cut(s) 62
PspGI CCWGG 1 cut(s) 62
PspN4I GGNNCC 1 cut(s) 165
PspPI GGNCC 2 cut(s) 124, 265
PsuI RGATCY 2 cut(s) 47, 54
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
SatI GCNGC 1 cut(s) 147
Sau3AI GATC 4 cut(s) 47, 54, 66, 210
Sau96I GGNCC 2 cut(s) 124, 265
ScrFI CCNGG 2 cut(s) 64, 156
SetI ASST 4 cut(s) 138, 180, 228, 267
SfaNI GCATC 1 cut(s) 159
SinI GGWCC 2 cut(s) 124, 265
Sse9I AATT 2 cut(s) 181, 255
SsiI CCGC 2 cut(s) 122, 146
StyD4I CCNGG 2 cut(s) 62, 154
StyI CCWWGG 1 cut(s) 261
TaqI TCGA 1 cut(s) 102
TasI AATT 2 cut(s) 181, 255
TauI GCSGC 1 cut(s) 149
TscAI CASTG 1 cut(s) 134
TspGWI ACGGA 1 cut(s) 257
TspRI CASTG 1 cut(s) 134
Van91I CCANNNNNTGG 1 cut(s) 139
VpaK11BI GGWCC 2 cut(s) 124, 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.