Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0028532

Physical Location & Seq

Genomic Coordinates Forward (+)

9408361 .. 9410660

Gene Structure 2300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1128500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGTCAATGTTTCCAAGAAGAACAAAGTTGCAGCTGGTGCTGAAGCTAATATGATCAAAAGAAGTAGAAATGGCGGGCATATGCGTAGGCGAAAGCTGTACCAAATGATCCTTGAGGATCACCAGCTGGTTCAACAACTAGCTTCTTGCGAAACGCTTGTCTCAACTGATCCTCCTCCGACTCCACGTCGGAGAGAAGCAGAATTCCATTACTCTGTCCTTGAACAAAAGGAAGGAGGAGTATGGCTCCACTTACAATTCGACGACATGAACTATTGCAACTTTGGACTCCCAGATTCAGGGAGCTTAATTGAGGAGCATGGATTAAGCGCTGGGGATACAGTTATGTTGTTTAAAGATGATCAGCTTGGATCCTACGACCTTCTCCGAGCTAGAAGGGATGCTATGCGACTTTTAACTCATCCAACAACGCACAACCCCGTCCGGTTGCCCCCAGGATTACCATATGATCCTTTGCAAGATTTTGGGGTTGAATCGTTTGTTGTACCGCGAGTTTTAGAATATAATTATCAAACAACAGATAATATCGCGGTCGACGTCGACGTTATGGATGAAAGTCATAGTACTGATAATCTAGAAGGTGTCCAAGCTGAAAAGGATCATCAAACAACTGTGTACCTGAACAACAACATTGATGTGGCAGTGGCTCCAGTTGAAGATCTTCAAACAGCGGTGAATGAGAGCAACAATGTTGGTATGGCCGAAGTTATGCAAGGTCATCAAACACATGCAAAATCATCAAACAACAAATGCAAACAACTACGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008284 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0010033 GO:0010115 GO:0010116 GO:0010154 GO:0010228 GO:0010262 GO:0010371 GO:0010373 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032350 GO:0032351 GO:0032353 GO:0032501 GO:0032502 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044212 GO:0044424 GO:0044464 GO:0045827 GO:0045828 GO:0045833 GO:0045834 GO:0046885 GO:0046889 GO:0046890 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0062014 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902930 GO:1902932 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

263

Amino Acids

29.5

Weight (kDa)

5.43

Isoelectric Point (pI)

54.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028532)

Species	Orthologous Gene IDs
malus_domestica	MD16G1128500.v1.1
pyrus_communis	pycom16g10900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	561
AccI	GTMKAC	2 cut(s)	555, 561
AccII	CGCG	2 cut(s)	511, 551
AciI	CCGC	4 cut(s)	75, 509, 551, 692
AclWI	GGATC	7 cut(s)	103, 126, 164, 366, 379, 464, 627
AcoI	YGGCCR	1 cut(s)	720
AcsI	RAATTY	1 cut(s)	203
AcuI	CTGAAG	1 cut(s)	63
AcyI	GRCGYC	1 cut(s)	558
AfaI	GTAC	4 cut(s)	101, 507, 586, 638
AfeI	AGCGCT	1 cut(s)	331
AfiI	CCNNNNNNNGG	1 cut(s)	299
AgsI	TTSAA	5 cut(s)	134, 224, 494, 677, 686
AhdI	GACNNNNNGTC	1 cut(s)	186
AjiI	CACGTC	1 cut(s)	188
AjnI	CCWGG	1 cut(s)	454
AluBI	AGCT	9 cut(s)	35, 47, 97, 127, 143, 306, 367, 392, 611
AluI	AGCT	9 cut(s)	35, 47, 97, 127, 143, 306, 367, 392, 611
Alw26I	GTCTC	1 cut(s)	166
AlwI	GGATC	7 cut(s)	103, 126, 164, 366, 379, 464, 627
Aor51HI	AGCGCT	1 cut(s)	331
AoxI	GGCC	1 cut(s)	720
ApeKI	GCWGC	1 cut(s)	32
ApoI	RAATTY	1 cut(s)	203
ArsI	GACNNNNNNTTYG	2 cut(s)	144, 176
Asp700I	GAANNNNTTC	1 cut(s)	681
AspLEI	GCGC	1 cut(s)	332
AsuHPI	GGTGA	2 cut(s)	113, 706
BamHI	GGATCC	1 cut(s)	371
BbvI	GCAGC	1 cut(s)	44
BciT130I	CCWGG	1 cut(s)	456
BciVI	GTATCC	1 cut(s)	331
BclI	TGATCA	2 cut(s)	54, 361
BcoDI	GTCTC	1 cut(s)	166
BfaI	CTAG	3 cut(s)	140, 393, 596
BfoI	RGCGCY	1 cut(s)	333
BfuI	GTATCC	1 cut(s)	331
BglII	AGATCT	1 cut(s)	679
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
BmcAI	AGTACT	1 cut(s)	586
Bme1390I	CCNGG	1 cut(s)	456
BmeRI	GACNNNNNGTC	1 cut(s)	186
BmgBI	CACGTC	1 cut(s)	188
BmiI	GGNNCC	3 cut(s)	248, 373, 669
BmrFI	CCNGG	1 cut(s)	456
BmsI	GCATC	1 cut(s)	391
BplI	GAGNNNNNCTC	2 cut(s)	231, 263
BpmI	CTGGAG	1 cut(s)	654
BpuEI	CTTGAG	1 cut(s)	134
BsaHI	GRCGYC	1 cut(s)	558
BsaJI	CCNNGG	1 cut(s)	454
BsaWI	WCCGGW	1 cut(s)	444
BsaXI	ACNNNNNCTCC	2 cut(s)	157, 187
Bsc4I	CCNNNNNNNGG	1 cut(s)	299
Bse1I	ACTGG	1 cut(s)	671
BseBI	CCWGG	1 cut(s)	456
BseDI	CCNNGG	1 cut(s)	454
BseGI	GGATG	3 cut(s)	406, 421, 577
BseLI	CCNNNNNNNGG	1 cut(s)	299
BseNI	ACTGG	1 cut(s)	671
BseRI	GAGGAG	3 cut(s)	165, 252, 329
BseXI	GCAGC	1 cut(s)	44
BseYI	CCCAGC	1 cut(s)	332
Bsh1236I	CGCG	2 cut(s)	511, 551
Bsh1285I	CGRYCG	1 cut(s)	555
BshFI	GGCC	1 cut(s)	722
BsiEI	CGRYCG	1 cut(s)	555
BsiSI	CCGG	1 cut(s)	445
BslI	CCNNNNNNNGG	1 cut(s)	299
BsmAI	GTCTC	1 cut(s)	166
BsnI	GGCC	1 cut(s)	722
Bsp143I	GATC	9 cut(s)	54, 108, 118, 169, 361, 371, 469, 619, 679
BspACI	CCGC	4 cut(s)	75, 509, 551, 692
BspANI	GGCC	1 cut(s)	722
BspFNI	CGCG	2 cut(s)	511, 551
BspLI	GGNNCC	3 cut(s)	248, 373, 669
BspPI	GGATC	7 cut(s)	103, 126, 164, 366, 379, 464, 627
BsrI	ACTGG	1 cut(s)	671
BssECI	CCNNGG	1 cut(s)	454
BssMI	GATC	9 cut(s)	54, 108, 118, 169, 361, 371, 469, 619, 679
BssNI	GRCGYC	1 cut(s)	558
Bst2UI	CCWGG	1 cut(s)	456
Bst4CI	ACNGT	2 cut(s)	343, 634
BstACI	GRCGYC	1 cut(s)	558
BstAPI	GCANNNNNTGC	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	77
BstF5I	GGATG	3 cut(s)	406, 421, 577
BstFNI	CGCG	2 cut(s)	511, 551
BstH2I	RGCGCY	1 cut(s)	333
BstHHI	GCGC	1 cut(s)	332
BstKTI	GATC	9 cut(s)	57, 111, 121, 172, 364, 374, 472, 622, 682
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	9 cut(s)	54, 108, 118, 169, 361, 371, 469, 619, 679
BstMCI	CGRYCG	1 cut(s)	555
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstNI	CCWGG	1 cut(s)	456
BstNSI	RCATGY	1 cut(s)	752
BstSCI	CCNGG	1 cut(s)	454
BstUI	CGCG	2 cut(s)	511, 551
BstV1I	GCAGC	1 cut(s)	44
BstX2I	RGATCY	2 cut(s)	371, 679
BstYI	RGATCY	2 cut(s)	371, 679
BsuI	GTATCC	1 cut(s)	331
BsuRI	GGCC	1 cut(s)	722
BtrI	CACGTC	1 cut(s)	188
BtsCI	GGATG	3 cut(s)	406, 421, 577
BtsI	GCAGTG	1 cut(s)	669
BtsIMutI	CAGTG	1 cut(s)	669
Cac8I	GCNNGC	1 cut(s)	77
CfoI	GCGC	1 cut(s)	332
Csp6I	GTAC	4 cut(s)	100, 506, 585, 637
CviAII	CATG	3 cut(s)	268, 320, 749
CviQI	GTAC	4 cut(s)	100, 506, 585, 637
DpnI	GATC	9 cut(s)	56, 110, 120, 171, 363, 373, 471, 621, 681
DpnII	GATC	9 cut(s)	54, 108, 118, 169, 361, 371, 469, 619, 679
DraI	TTTAAA	1 cut(s)	355
DriI	GACNNNNNGTC	1 cut(s)	186
EaeI	YGGCCR	1 cut(s)	720
Eam1105I	GACNNNNNGTC	1 cut(s)	186
Eco47III	AGCGCT	1 cut(s)	331
Eco57I	CTGAAG	1 cut(s)	63
EcoRI	GAATTC	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	454
FaeI	CATG	3 cut(s)	271, 323, 752
FatI	CATG	3 cut(s)	267, 319, 748
FauI	CCCGC	1 cut(s)	68
FauNDI	CATATG	2 cut(s)	81, 466
FbaI	TGATCA	2 cut(s)	54, 361
FblI	GTMKAC	2 cut(s)	555, 561
Fnu4HI	GCNGC	1 cut(s)	33
FokI	GGATG	3 cut(s)	408, 413, 584
Fsp4HI	GCNGC	1 cut(s)	33
FspBI	CTAG	3 cut(s)	140, 393, 596
GlaI	GCGC	1 cut(s)	331
GluI	GCNGC	1 cut(s)	33
GsaI	CCCAGC	1 cut(s)	336
GsuI	CTGGAG	1 cut(s)	654
HaeII	RGCGCY	1 cut(s)	333
HaeIII	GGCC	1 cut(s)	722
HapII	CCGG	1 cut(s)	445
HhaI	GCGC	1 cut(s)	332
Hin1I	GRCGYC	1 cut(s)	558
Hin1II	CATG	3 cut(s)	271, 323, 752
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
HincII	GTYRAC	2 cut(s)	556, 562
HindII	GTYRAC	2 cut(s)	556, 562
HinfI	GANTC	4 cut(s)	181, 288, 296, 494
HpaII	CCGG	1 cut(s)	445
HphI	GGTGA	2 cut(s)	113, 706
Hpy166II	GTNNAC	3 cut(s)	556, 562, 637
Hpy188I	TCNGA	3 cut(s)	180, 192, 389
Hpy188III	TCNNGA	1 cut(s)	596
Hpy8I	GTNNAC	3 cut(s)	556, 562, 637
Hpy99I	CGWCG	5 cut(s)	192, 266, 560, 563, 566
HpyAV	CCTTC	4 cut(s)	227, 390, 392, 593
HpyCH4III	ACNGT	2 cut(s)	343, 634
HpyCH4IV	ACGT	4 cut(s)	187, 558, 564, 784
HpyCH4V	TGCA	6 cut(s)	32, 279, 478, 733, 752, 774
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpySE526I	ACGT	4 cut(s)	187, 558, 564, 784
Hsp92I	GRCGYC	1 cut(s)	558
Hsp92II	CATG	3 cut(s)	271, 323, 752
HspAI	GCGC	1 cut(s)	330
Ksp22I	TGATCA	2 cut(s)	54, 361
Kzo9I	GATC	9 cut(s)	54, 108, 118, 169, 361, 371, 469, 619, 679
LmnI	GCTCC	4 cut(s)	252, 303, 316, 673
Lsp1109I	GCAGC	1 cut(s)	44
LweI	GCATC	1 cut(s)	391
MaeI	CTAG	3 cut(s)	140, 393, 596
MaeII	ACGT	4 cut(s)	187, 558, 564, 784
MalI	GATC	9 cut(s)	56, 110, 120, 171, 363, 373, 471, 621, 681
MboI	GATC	9 cut(s)	54, 108, 118, 169, 361, 371, 469, 619, 679
MboII	GAAGA	3 cut(s)	31, 674, 689
MflI	RGATCY	2 cut(s)	371, 679
MluCI	AATT	4 cut(s)	203, 257, 309, 526
MlyI	GAGTC	2 cut(s)	175, 282
MmeI	TCCRAC	3 cut(s)	170, 203, 449
MnlI	CCTC	5 cut(s)	109, 183, 186, 230, 307
MroXI	GAANNNNTTC	1 cut(s)	681
MseI	TTAA	4 cut(s)	308, 326, 354, 416
MslI	CAYNNNNRTG	1 cut(s)	656
MspA1I	CMGCKG	3 cut(s)	35, 127, 692
MspI	CCGG	1 cut(s)	445
MspR9I	CCNGG	1 cut(s)	456
MvaI	CCWGG	1 cut(s)	456
MvnI	CGCG	2 cut(s)	511, 551
MwoI	GCNNNNNNNGC	1 cut(s)	38
NdeI	CATATG	2 cut(s)	81, 466
NdeII	GATC	9 cut(s)	54, 108, 118, 169, 361, 371, 469, 619, 679
NlaIII	CATG	3 cut(s)	271, 323, 752
NlaIV	GGNNCC	3 cut(s)	248, 373, 669
NspI	RCATGY	1 cut(s)	752
PcsI	WCGNNNNNNNCGW	2 cut(s)	555, 561
PdmI	GAANNNNTTC	1 cut(s)	681
PfeI	GAWTC	2 cut(s)	296, 494
PkrI	GCNGC	1 cut(s)	34
PleI	GAGTC	2 cut(s)	175, 282
PpsI	GAGTC	2 cut(s)	175, 282
Psp6I	CCWGG	1 cut(s)	454
PspFI	CCCAGC	1 cut(s)	332
PspGI	CCWGG	1 cut(s)	454
PspN4I	GGNNCC	3 cut(s)	248, 373, 669
PsuI	RGATCY	2 cut(s)	371, 679
PvuII	CAGCTG	2 cut(s)	35, 127
RsaI	GTAC	4 cut(s)	101, 507, 586, 638
RsaNI	GTAC	4 cut(s)	100, 506, 585, 637
RseI	CAYNNNNRTG	1 cut(s)	656
SalI	GTCGAC	2 cut(s)	554, 560
SaqAI	TTAA	4 cut(s)	308, 326, 354, 416
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	9 cut(s)	54, 108, 118, 169, 361, 371, 469, 619, 679
ScaI	AGTACT	1 cut(s)	586
SchI	GAGTC	2 cut(s)	175, 282
ScrFI	CCNGG	1 cut(s)	456
SfaNI	GCATC	1 cut(s)	391
SgrDI	CGTCGACG	1 cut(s)	560
SmiMI	CAYNNNNRTG	1 cut(s)	656
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	4 cut(s)	203, 257, 309, 526
SsiI	CCGC	4 cut(s)	75, 509, 551, 692
SspMI	CTAG	3 cut(s)	140, 393, 596
StyD4I	CCNGG	1 cut(s)	454
TaaI	ACNGT	2 cut(s)	343, 634
TaiI	ACGT	4 cut(s)	190, 561, 567, 787
TaqI	TCGA	3 cut(s)	261, 555, 561
TasI	AATT	4 cut(s)	203, 257, 309, 526
TatI	WGTACW	1 cut(s)	584
TfiI	GAWTC	2 cut(s)	296, 494
Tru1I	TTAA	4 cut(s)	308, 326, 354, 416
Tru9I	TTAA	4 cut(s)	308, 326, 354, 416
TscAI	CASTG	1 cut(s)	669
TseI	GCWGC	1 cut(s)	32
TspDTI	ATGAA	2 cut(s)	284, 588
TspRI	CASTG	1 cut(s)	669
XapI	RAATTY	1 cut(s)	203
XbaI	TCTAGA	1 cut(s)	595
XceI	RCATGY	1 cut(s)	752
XmiI	GTMKAC	2 cut(s)	555, 561
XmnI	GAANNNNTTC	1 cut(s)	681
XspI	CTAG	3 cut(s)	140, 393, 596
ZraI	GACGTC	1 cut(s)	559
ZrmI	AGTACT	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.