Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0028532

Physical Location & Seq

Genomic Coordinates Forward (+)

7550369 .. 7552067

Gene Structure 1699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g10900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGGTCGATGTTTCCAAGAAGAACAAAGTTGCAGCTGGTGCTGAAGCTAATATGATCAAAAGAAGTAGAAATGGCGGGCATATGCGGAGGCGAAAGCTGTACCAACTGAACCTTGAGGATCACCAACTGGTTCAACAACTAGCTTCTTGCGAAACGCTTGTCTCGACTGATCCTCCTCCGACTCCACGTCGGGATGGAAGAGTATGGCTCCACTTACAATTCGACGACATGAACTATTGCAACTTTGGACTCCCAGATTCAGGGAGCTTAATTGAGGAGCATGGATTAAGCGCTGGGGATACAGTTATGTTGTTTAAAGATGATCAGCTTGAATTTATTGATCGATCCTACGACCTTCTCCGAGCTAGAAGGGATGCTATGCGACTTTTAACTCATCCAACAACGCACAACCCCGTCCGGTTGCCTCCAGGATTACCATATGATCCTTTGCAAGATTTTGGGGTTGAATCGTTTGTTGTACCGCGAGTTTTAGAATATAATTATCAAACAATAGAGAACATCGCGGTCGTCATCGGCGTCATGGATGAAAGTCATAGTACTGATAACCTAGAAGGTGTCCAAGCTAAAGAGGATCATCAAATAACTGTTTACCAGAACAATTACGTTGATGTGGCAGTGGCTCCAGTTGAAGAAGATCTTCAAACAACGGTGAATGAGAACAGCAATGTTGGTATGGCCGAAGTTATGCAAGGTCATCAAACACATGCAAAATCATCAAACAATAAATGCGAACAACTACGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0008284 GO:0009314 GO:0009416 GO:0009628 GO:0009648 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0010033 GO:0010115 GO:0010116 GO:0010154 GO:0010228 GO:0010262 GO:0010371 GO:0010373 GO:0010468 GO:0010556 GO:0010565 GO:0010817 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0022414 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0032350 GO:0032351 GO:0032353 GO:0032501 GO:0032502 GO:0042127 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043455 GO:0044212 GO:0044424 GO:0044464 GO:0045827 GO:0045828 GO:0045833 GO:0045834 GO:0046885 GO:0046889 GO:0046890 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048573 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051055 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0062012 GO:0062013 GO:0062014 GO:0065007 GO:0065008 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902930 GO:1902932 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

255

Amino Acids

28.74

Weight (kDa)

5.24

Isoelectric Point (pI)

52.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028532)

Species	Orthologous Gene IDs
malus_domestica	MD16G1128500.v1.1
pyrus_communis	pycom16g10900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	484, 524
AciI	CCGC	4 cut(s)	75, 85, 482, 524
AclWI	GGATC	5 cut(s)	126, 164, 339, 437, 600
AcoI	YGGCCR	1 cut(s)	696
AcsI	RAATTY	1 cut(s)	332
AcuI	CTGAAG	1 cut(s)	63
AcyI	GRCGYC	1 cut(s)	537
AfaI	GTAC	3 cut(s)	101, 480, 559
AfeI	AGCGCT	1 cut(s)	292
AfiI	CCNNNNNNNGG	1 cut(s)	260
AgsI	TTSAA	5 cut(s)	134, 332, 467, 650, 662
AhdI	GACNNNNNGTC	1 cut(s)	186
AjiI	CACGTC	1 cut(s)	188
AjnI	CCWGG	1 cut(s)	427
AluBI	AGCT	8 cut(s)	35, 47, 97, 143, 267, 328, 365, 584
AluI	AGCT	8 cut(s)	35, 47, 97, 143, 267, 328, 365, 584
Alw26I	GTCTC	1 cut(s)	166
AlwI	GGATC	5 cut(s)	126, 164, 339, 437, 600
Aor51HI	AGCGCT	1 cut(s)	292
AoxI	GGCC	1 cut(s)	696
ApeKI	GCWGC	1 cut(s)	32
ApoI	RAATTY	1 cut(s)	332
ArsI	GACNNNNNNTTYG	2 cut(s)	144, 176
Asp700I	GAANNNNTTC	1 cut(s)	657
AspLEI	GCGC	1 cut(s)	293
AsuHPI	GGTGA	2 cut(s)	113, 682
BbvI	GCAGC	1 cut(s)	44
BccI	CCATC	1 cut(s)	188
BciT130I	CCWGG	1 cut(s)	429
BciVI	GTATCC	1 cut(s)	292
BclI	TGATCA	2 cut(s)	54, 322
BcoDI	GTCTC	1 cut(s)	166
BfaI	CTAG	3 cut(s)	140, 366, 569
BfoI	RGCGCY	1 cut(s)	294
BfuI	GTATCC	1 cut(s)	292
BglII	AGATCT	1 cut(s)	655
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
BmcAI	AGTACT	1 cut(s)	559
Bme1390I	CCNGG	1 cut(s)	429
BmeRI	GACNNNNNGTC	1 cut(s)	186
BmgBI	CACGTC	1 cut(s)	188
BmiI	GGNNCC	2 cut(s)	209, 642
BmrFI	CCNGG	1 cut(s)	429
BmsI	GCATC	1 cut(s)	364
BplI	GAGNNNNNCTC	2 cut(s)	192, 224
BpmI	CTGGAG	2 cut(s)	411, 627
BpuEI	CTTGAG	1 cut(s)	134
Bsa29I	ATCGAT	1 cut(s)	343
BsaHI	GRCGYC	1 cut(s)	537
BsaWI	WCCGGW	1 cut(s)	417
BsaXI	ACNNNNNCTCC	2 cut(s)	157, 187
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
Bse1I	ACTGG	2 cut(s)	132, 644
Bse3DI	GCAATG	1 cut(s)	691
BseBI	CCWGG	1 cut(s)	429
BseCI	ATCGAT	1 cut(s)	343
BseGI	GGATG	4 cut(s)	199, 379, 394, 550
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseMI	GCAATG	1 cut(s)	691
BseNI	ACTGG	2 cut(s)	132, 644
BseRI	GAGGAG	2 cut(s)	165, 290
BseXI	GCAGC	1 cut(s)	44
BseYI	CCCAGC	1 cut(s)	293
Bsh1236I	CGCG	2 cut(s)	484, 524
Bsh1285I	CGRYCG	1 cut(s)	528
BshFI	GGCC	1 cut(s)	698
BshVI	ATCGAT	1 cut(s)	343
BsiEI	CGRYCG	1 cut(s)	528
BsiSI	CCGG	1 cut(s)	418
BslI	CCNNNNNNNGG	1 cut(s)	260
BsmAI	GTCTC	1 cut(s)	166
BsnI	GGCC	1 cut(s)	698
Bsp143I	GATC	9 cut(s)	54, 118, 169, 322, 340, 344, 442, 592, 655
BspACI	CCGC	4 cut(s)	75, 85, 482, 524
BspANI	GGCC	1 cut(s)	698
BspDI	ATCGAT	1 cut(s)	343
BspFNI	CGCG	2 cut(s)	484, 524
BspLI	GGNNCC	2 cut(s)	209, 642
BspPI	GGATC	5 cut(s)	126, 164, 339, 437, 600
BsrDI	GCAATG	1 cut(s)	691
BsrI	ACTGG	2 cut(s)	132, 644
BssMI	GATC	9 cut(s)	54, 118, 169, 322, 340, 344, 442, 592, 655
BssNI	GRCGYC	1 cut(s)	537
Bst2UI	CCWGG	1 cut(s)	429
Bst4CI	ACNGT	3 cut(s)	304, 607, 670
Bst6I	CTCTTC	1 cut(s)	193
BstACI	GRCGYC	1 cut(s)	537
BstAPI	GCANNNNNTGC	1 cut(s)	38
BstC8I	GCNNGC	1 cut(s)	77
BstF5I	GGATG	4 cut(s)	199, 379, 394, 550
BstFNI	CGCG	2 cut(s)	484, 524
BstH2I	RGCGCY	1 cut(s)	294
BstHHI	GCGC	1 cut(s)	293
BstKTI	GATC	9 cut(s)	57, 121, 172, 325, 343, 347, 445, 595, 658
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	9 cut(s)	54, 118, 169, 322, 340, 344, 442, 592, 655
BstMCI	CGRYCG	1 cut(s)	528
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstNI	CCWGG	1 cut(s)	429
BstNSI	RCATGY	1 cut(s)	728
BstSCI	CCNGG	1 cut(s)	427
BstUI	CGCG	2 cut(s)	484, 524
BstV1I	GCAGC	1 cut(s)	44
BstX2I	RGATCY	1 cut(s)	655
BstYI	RGATCY	1 cut(s)	655
Bsu15I	ATCGAT	1 cut(s)	343
BsuI	GTATCC	1 cut(s)	292
BsuRI	GGCC	1 cut(s)	698
BsuTUI	ATCGAT	1 cut(s)	343
BtgZI	GCGATG	1 cut(s)	505
BtrI	CACGTC	1 cut(s)	188
BtsCI	GGATG	4 cut(s)	199, 379, 394, 550
BtsI	GCAGTG	1 cut(s)	642
BtsIMutI	CAGTG	1 cut(s)	642
Cac8I	GCNNGC	1 cut(s)	77
CfoI	GCGC	1 cut(s)	293
ClaI	ATCGAT	1 cut(s)	343
CseI	GACGC	1 cut(s)	526
Csp6I	GTAC	3 cut(s)	100, 479, 558
CviAII	CATG	4 cut(s)	229, 281, 541, 725
CviQI	GTAC	3 cut(s)	100, 479, 558
DpnI	GATC	9 cut(s)	56, 120, 171, 324, 342, 346, 444, 594, 657
DpnII	GATC	9 cut(s)	54, 118, 169, 322, 340, 344, 442, 592, 655
DraI	TTTAAA	1 cut(s)	316
DriI	GACNNNNNGTC	1 cut(s)	186
EaeI	YGGCCR	1 cut(s)	696
Eam1104I	CTCTTC	1 cut(s)	193
Eam1105I	GACNNNNNGTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	193
Eco47III	AGCGCT	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	427
FaeI	CATG	4 cut(s)	232, 284, 544, 728
FalI	AAGNNNNNCTT	2 cut(s)	642, 674
FatI	CATG	4 cut(s)	228, 280, 540, 724
FauI	CCCGC	1 cut(s)	68
FauNDI	CATATG	2 cut(s)	81, 439
FbaI	TGATCA	2 cut(s)	54, 322
Fnu4HI	GCNGC	1 cut(s)	33
FokI	GGATG	4 cut(s)	206, 381, 386, 557
Fsp4HI	GCNGC	1 cut(s)	33
FspBI	CTAG	3 cut(s)	140, 366, 569
GlaI	GCGC	1 cut(s)	292
GluI	GCNGC	1 cut(s)	33
GsaI	CCCAGC	1 cut(s)	297
GsuI	CTGGAG	2 cut(s)	411, 627
HaeII	RGCGCY	1 cut(s)	294
HaeIII	GGCC	1 cut(s)	698
HapII	CCGG	1 cut(s)	418
HgaI	GACGC	1 cut(s)	526
HhaI	GCGC	1 cut(s)	293
Hin1I	GRCGYC	1 cut(s)	537
Hin1II	CATG	4 cut(s)	232, 284, 544, 728
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HinfI	GANTC	4 cut(s)	181, 249, 257, 467
HpaII	CCGG	1 cut(s)	418
HphI	GGTGA	2 cut(s)	113, 682
Hpy166II	GTNNAC	1 cut(s)	610
Hpy188I	TCNGA	2 cut(s)	180, 362
Hpy188III	TCNNGA	2 cut(s)	163, 191
Hpy8I	GTNNAC	1 cut(s)	610
Hpy99I	CGWCG	2 cut(s)	192, 227
HpyAV	CCTTC	3 cut(s)	363, 365, 566
HpyCH4III	ACNGT	3 cut(s)	304, 607, 670
HpyCH4IV	ACGT	3 cut(s)	187, 624, 760
HpyCH4V	TGCA	5 cut(s)	32, 240, 451, 709, 728
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpySE526I	ACGT	3 cut(s)	187, 624, 760
Hsp92I	GRCGYC	1 cut(s)	537
Hsp92II	CATG	4 cut(s)	232, 284, 544, 728
HspAI	GCGC	1 cut(s)	291
Ksp22I	TGATCA	2 cut(s)	54, 322
Kzo9I	GATC	9 cut(s)	54, 118, 169, 322, 340, 344, 442, 592, 655
LmnI	GCTCC	4 cut(s)	213, 264, 277, 646
Lsp1109I	GCAGC	1 cut(s)	44
LweI	GCATC	1 cut(s)	364
MaeI	CTAG	3 cut(s)	140, 366, 569
MaeII	ACGT	3 cut(s)	187, 624, 760
MalI	GATC	9 cut(s)	56, 120, 171, 324, 342, 346, 444, 594, 657
MboI	GATC	9 cut(s)	54, 118, 169, 322, 340, 344, 442, 592, 655
MboII	GAAGA	5 cut(s)	31, 210, 650, 662, 665
MflI	RGATCY	1 cut(s)	655
MluCI	AATT	5 cut(s)	218, 270, 332, 499, 619
MlyI	GAGTC	2 cut(s)	175, 243
MmeI	TCCRAC	2 cut(s)	203, 422
MnlI	CCTC	7 cut(s)	81, 109, 183, 186, 268, 435, 583
MroXI	GAANNNNTTC	1 cut(s)	657
MseI	TTAA	4 cut(s)	269, 287, 315, 389
MspA1I	CMGCKG	1 cut(s)	35
MspI	CCGG	1 cut(s)	418
MspR9I	CCNGG	1 cut(s)	429
MvaI	CCWGG	1 cut(s)	429
MvnI	CGCG	2 cut(s)	484, 524
MwoI	GCNNNNNNNGC	1 cut(s)	38
NdeI	CATATG	2 cut(s)	81, 439
NdeII	GATC	9 cut(s)	54, 118, 169, 322, 340, 344, 442, 592, 655
NlaIII	CATG	4 cut(s)	232, 284, 544, 728
NlaIV	GGNNCC	2 cut(s)	209, 642
NspI	RCATGY	1 cut(s)	728
PcsI	WCGNNNNNNNCGW	2 cut(s)	161, 534
PdmI	GAANNNNTTC	1 cut(s)	657
PfeI	GAWTC	2 cut(s)	257, 467
PfoI	TCCNGGA	1 cut(s)	427
PkrI	GCNGC	1 cut(s)	34
PleI	GAGTC	2 cut(s)	175, 243
PpsI	GAGTC	2 cut(s)	175, 243
Psp6I	CCWGG	1 cut(s)	427
PspFI	CCCAGC	1 cut(s)	293
PspGI	CCWGG	1 cut(s)	427
PspN4I	GGNNCC	2 cut(s)	209, 642
PsuI	RGATCY	1 cut(s)	655
PvuII	CAGCTG	1 cut(s)	35
RsaI	GTAC	3 cut(s)	101, 480, 559
RsaNI	GTAC	3 cut(s)	100, 479, 558
SaqAI	TTAA	4 cut(s)	269, 287, 315, 389
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	9 cut(s)	54, 118, 169, 322, 340, 344, 442, 592, 655
ScaI	AGTACT	1 cut(s)	559
SchI	GAGTC	2 cut(s)	175, 243
ScrFI	CCNGG	1 cut(s)	429
SfaNI	GCATC	1 cut(s)	364
SmlI	CTYRAG	1 cut(s)	113
SmoI	CTYRAG	1 cut(s)	113
Sse9I	AATT	5 cut(s)	218, 270, 332, 499, 619
SsiI	CCGC	4 cut(s)	75, 85, 482, 524
SspMI	CTAG	3 cut(s)	140, 366, 569
StyD4I	CCNGG	1 cut(s)	427
TaaI	ACNGT	3 cut(s)	304, 607, 670
TaiI	ACGT	3 cut(s)	190, 627, 763
TaqI	TCGA	4 cut(s)	6, 164, 222, 343
TasI	AATT	5 cut(s)	218, 270, 332, 499, 619
TatI	WGTACW	1 cut(s)	557
TfiI	GAWTC	2 cut(s)	257, 467
Tru1I	TTAA	4 cut(s)	269, 287, 315, 389
Tru9I	TTAA	4 cut(s)	269, 287, 315, 389
TscAI	CASTG	1 cut(s)	642
TseI	GCWGC	1 cut(s)	32
TspDTI	ATGAA	2 cut(s)	245, 561
TspRI	CASTG	1 cut(s)	642
XapI	RAATTY	1 cut(s)	332
XceI	RCATGY	1 cut(s)	728
XmnI	GAANNNNTTC	1 cut(s)	657
XspI	CTAG	3 cut(s)	140, 366, 569
ZrmI	AGTACT	1 cut(s)	559

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.