MD16G1147300.v1.1

Probable protein Pop3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0024354
Physical Location & Seq
Reverse (-)
11507020 .. 11508889
1870 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1147300.v1.1.491

Sequence Viewer

Length: 345 bp
ATGGCAAAGTTCAAAGAAGGAACTTCAGAGACCCAGATCGAGCAACTCATCAAATCCTATGCCAACCTGGTCAACCTCGTTGAGCCCATGAAGTCCTTCCACTGGGGAAAGGAGCTGAGCATTGAGAAGCAAGAGGAAGGTTACACTCATGTCTTTGAGACCACCTTTGAGAGTGTGGAGGGTATTGCAGAGTTTTCAGGTCATCCTGCCCACCATGATTTTGCCAAGCTGTTCCTTCCCAATTTGGAGAAATTATGTTTCATCGCAGCACGAGATCAGCAAGTCATAGCCCTCAAAAACCCTACCGAAGTACAGGCTATGTTGATGAAGATCCTTTCCAAATAG

Protein Analysis

115

Amino Acids

13.01

Weight (kDa)

5.71

Isoelectric Point (pI)

29.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dabb PF07876 1 - 85 6e-22 Stress responsive A/B Barrel Domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0024354)

Species Orthologous Gene IDs
malus_domestica MD16G1147300.v1.1
prunus_persica Prupe.1G111100_v2.0.a1
pyrus_communis pycom16g12530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 325
AcuI CTGAAG 1 cut(s) 9
AfaI GTAC 1 cut(s) 312
AfiI CCNNNNNNNGG 1 cut(s) 102
AgsI TTSAA 1 cut(s) 13
AjnI CCWGG 1 cut(s) 66
AluBI AGCT 2 cut(s) 115, 229
AluI AGCT 2 cut(s) 115, 229
Alw26I GTCTC 2 cut(s) 23, 152
AlwI GGATC 1 cut(s) 325
ApeKI GCWGC 1 cut(s) 266
Asp700I GAANNNNTTC 1 cut(s) 95
BanII GRGCYC 1 cut(s) 87
BauI CACGAG 1 cut(s) 270
BbvI GCAGC 1 cut(s) 278
BciT130I CCWGG 1 cut(s) 68
BcoDI GTCTC 2 cut(s) 23, 152
BisI GCNGC 1 cut(s) 267
BlpI GCTNAGC 1 cut(s) 116
BlsI GCNGC 1 cut(s) 268
Bme1390I CCNGG 1 cut(s) 68
BmrFI CCNGG 1 cut(s) 68
BmrI ACTGGG 1 cut(s) 112
BmuI ACTGGG 1 cut(s) 112
Bpu1102I GCTNAGC 1 cut(s) 116
BsaBI GATNNNNATC 1 cut(s) 329
BsaI GGTCTC 2 cut(s) 23, 152
Bsc4I CCNNNNNNNGG 1 cut(s) 102
Bse1I ACTGG 1 cut(s) 107
Bse8I GATNNNNATC 1 cut(s) 329
BseBI CCWGG 1 cut(s) 68
BseGI GGATG 1 cut(s) 202
BseJI GATNNNNATC 1 cut(s) 329
BseLI CCNNNNNNNGG 1 cut(s) 102
BseMII CTCAG 1 cut(s) 107
BseNI ACTGG 1 cut(s) 107
BseXI GCAGC 1 cut(s) 278
BslI CCNNNNNNNGG 1 cut(s) 102
BsmAI GTCTC 2 cut(s) 23, 152
Bso31I GGTCTC 2 cut(s) 23, 152
Bsp1286I GDGCHC 1 cut(s) 87
Bsp143I GATC 3 cut(s) 36, 274, 330
Bsp1720I GCTNAGC 1 cut(s) 116
BspCNI CTCAG 1 cut(s) 108
BspPI GGATC 1 cut(s) 325
BspTNI GGTCTC 2 cut(s) 23, 152
BsrI ACTGG 1 cut(s) 107
BssMI GATC 3 cut(s) 36, 274, 330
BssSI CACGAG 1 cut(s) 270
Bst2BI CACGAG 1 cut(s) 270
Bst2UI CCWGG 1 cut(s) 68
BstDEI CTNAG 1 cut(s) 116
BstF5I GGATG 1 cut(s) 202
BstKTI GATC 3 cut(s) 39, 277, 333
BstMAI GTCTC 2 cut(s) 23, 152
BstMBI GATC 3 cut(s) 36, 274, 330
BstNI CCWGG 1 cut(s) 68
BstSCI CCNGG 1 cut(s) 66
BstV1I GCAGC 1 cut(s) 278
BstX2I RGATCY 1 cut(s) 330
BstYI RGATCY 1 cut(s) 330
BtgZI GCGATG 1 cut(s) 247
BtsCI GGATG 1 cut(s) 202
BtsIMutI CAGTG 1 cut(s) 100
CsiI ACCWGGT 1 cut(s) 66
Csp6I GTAC 1 cut(s) 311
CviAII CATG 3 cut(s) 88, 149, 215
CviJI RGCY 5 cut(s) 85, 115, 229, 290, 317
CviKI_1 RGCY 5 cut(s) 85, 115, 229, 290, 317
CviQI GTAC 1 cut(s) 311
DdeI CTNAG 1 cut(s) 116
DpnI GATC 3 cut(s) 38, 276, 332
DpnII GATC 3 cut(s) 36, 274, 330
Eco24I GRGCYC 1 cut(s) 87
Eco31I GGTCTC 2 cut(s) 23, 152
Eco57I CTGAAG 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 66
EcoT38I GRGCYC 1 cut(s) 87
FaeI CATG 3 cut(s) 91, 152, 218
FaiI YATR 7 cut(s) 60, 89, 150, 216, 256, 287, 320
FatI CATG 3 cut(s) 87, 148, 214
Fnu4HI GCNGC 1 cut(s) 267
FokI GGATG 1 cut(s) 189
FriOI GRGCYC 1 cut(s) 87
Fsp4HI GCNGC 1 cut(s) 267
GluI GCNGC 1 cut(s) 267
Hin1II CATG 3 cut(s) 91, 152, 218
HincII GTYRAC 1 cut(s) 73
HindII GTYRAC 1 cut(s) 73
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 1 cut(s) 28
Hpy8I GTNNAC 1 cut(s) 73
HpyAV CCTTC 4 cut(s) 11, 106, 131, 245
HpyCH4V TGCA 1 cut(s) 188
HpyF3I CTNAG 1 cut(s) 116
Hsp92II CATG 3 cut(s) 91, 152, 218
Kzo9I GATC 3 cut(s) 36, 274, 330
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 7 cut(s) 47, 53, 80, 88, 183, 219, 299
Lsp1109I GCAGC 1 cut(s) 278
MabI ACCWGGT 1 cut(s) 66
MaeIII GTNAC 1 cut(s) 140
MalI GATC 3 cut(s) 38, 276, 332
MboI GATC 3 cut(s) 36, 274, 330
MboII GAAGA 1 cut(s) 340
MflI RGATCY 1 cut(s) 330
MhlI GDGCHC 1 cut(s) 87
MluCI AATT 2 cut(s) 241, 251
MnlI CCTC 4 cut(s) 86, 127, 172, 302
MroXI GAANNNNTTC 1 cut(s) 95
MspR9I CCNGG 1 cut(s) 68
MvaI CCWGG 1 cut(s) 68
NdeII GATC 3 cut(s) 36, 274, 330
NlaIII CATG 3 cut(s) 91, 152, 218
PdmI GAANNNNTTC 1 cut(s) 95
PkrI GCNGC 1 cut(s) 268
Psp6I CCWGG 1 cut(s) 66
PspGI CCWGG 1 cut(s) 66
PsuI RGATCY 1 cut(s) 330
RsaI GTAC 1 cut(s) 312
RsaNI GTAC 1 cut(s) 311
SatI GCNGC 1 cut(s) 267
Sau3AI GATC 3 cut(s) 36, 274, 330
ScrFI CCNGG 1 cut(s) 68
SduI GDGCHC 1 cut(s) 87
SetI ASST 7 cut(s) 69, 78, 117, 142, 167, 202, 231
SexAI ACCWGGT 1 cut(s) 66
Sse9I AATT 2 cut(s) 241, 251
StyD4I CCNGG 1 cut(s) 66
TaqI TCGA 1 cut(s) 39
TasI AATT 2 cut(s) 241, 251
TatI WGTACW 1 cut(s) 310
TscAI CASTG 1 cut(s) 107
TseI GCWGC 1 cut(s) 266
TspDTI ATGAA 3 cut(s) 104, 250, 341
TspRI CASTG 1 cut(s) 107
XmnI GAANNNNTTC 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.