Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0024354

Physical Location & Seq

Genomic Coordinates Reverse (-)

8863811 .. 8864756

Gene Structure 946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G111100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGCAGAAGAAGCAAAGGGAGGTGTTAAGAATTTATTGCTAGCACAATTCAAAGAAGGAACCTCGGAGAGCCAGATTGACCAACTGATCCAAGGCTATGCCAACCTAGTCAATCTCATTGACCCCATGAAGTCCTTCCACTGGGGACATGAATTGAGCACTGAGAAGCAGCTGGAAGGGTACACTCATGTGTTTGAAACAACCTTTGAGAGTGTGGAGGGTGTTGCAGAGTACATAGCTCACCCTGCCCATCTTGATTTTGCAAACTTGTTCCTTCCCAATTTAGAGCAATTATCTTTCAGCTCAACTGCAGACCAGCAAGTCATCACCATGAAAAACCCTAGTGAAATACAAGTTATGATGATGGAGCTGCTACCAGATCCAAAAGATCAATCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0016020 GO:0042742 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dabb

Protein Analysis

133

Amino Acids

14.83

Weight (kDa)

4.51

Isoelectric Point (pI)

30.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0024354)

Species	Orthologous Gene IDs
malus_domestica	MD16G1147300.v1.1
prunus_persica	Prupe.1G111100_v2.0.a1
pyrus_communis	pycom16g12530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	320
AclWI	GGATC	2 cut(s)	82, 374
AcsI	RAATTY	1 cut(s)	31
AfaI	GTAC	2 cut(s)	182, 233
AfiI	CCNNNNNNNGG	1 cut(s)	141
AgsI	TTSAA	2 cut(s)	52, 197
AleI	CACNNNNGTG	1 cut(s)	188
AluBI	AGCT	4 cut(s)	172, 239, 303, 370
AluI	AGCT	4 cut(s)	172, 239, 303, 370
Alw21I	GWGCWC	1 cut(s)	161
AlwI	GGATC	2 cut(s)	82, 374
ApeKI	GCWGC	2 cut(s)	169, 370
ApoI	RAATTY	1 cut(s)	31
Asp700I	GAANNNNTTC	1 cut(s)	134
AsuHPI	GGTGA	2 cut(s)	233, 319
AsuNHI	GCTAGC	1 cut(s)	40
Bbv12I	GWGCWC	1 cut(s)	161
BbvI	GCAGC	2 cut(s)	181, 357
BccI	CCATC	2 cut(s)	258, 358
BfaI	CTAG	3 cut(s)	41, 107, 342
BfmI	CTRYAG	1 cut(s)	309
BisI	GCNGC	2 cut(s)	170, 371
BlsI	GCNGC	2 cut(s)	171, 372
BmiI	GGNNCC	1 cut(s)	61
BmrI	ACTGGG	1 cut(s)	151
BmtI	GCTAGC	1 cut(s)	44
BmuI	ACTGGG	1 cut(s)	151
BsaJI	CCNNGG	2 cut(s)	63, 91
Bsc4I	CCNNNNNNNGG	1 cut(s)	141
Bse1I	ACTGG	1 cut(s)	146
BseDI	CCNNGG	2 cut(s)	63, 91
BseLI	CCNNNNNNNGG	1 cut(s)	141
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	1 cut(s)	146
BseXI	GCAGC	2 cut(s)	181, 357
BsiHKAI	GWGCWC	1 cut(s)	161
BslFI	GGGAC	1 cut(s)	159
BslI	CCNNNNNNNGG	1 cut(s)	141
BsmFI	GGGAC	1 cut(s)	159
Bsp1286I	GDGCHC	1 cut(s)	161
Bsp143I	GATC	3 cut(s)	87, 379, 388
BspCNI	CTCAG	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	61
BspMAI	CTGCAG	1 cut(s)	313
BspOI	GCTAGC	1 cut(s)	44
BspPI	GGATC	2 cut(s)	82, 374
BsrI	ACTGG	1 cut(s)	146
BssECI	CCNNGG	2 cut(s)	63, 91
BssMI	GATC	3 cut(s)	87, 379, 388
BssT1I	CCWWGG	1 cut(s)	91
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	1 cut(s)	162
BstKTI	GATC	3 cut(s)	90, 382, 391
BstMBI	GATC	3 cut(s)	87, 379, 388
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 245
BstSFI	CTRYAG	1 cut(s)	309
BstV1I	GCAGC	2 cut(s)	181, 357
BstX2I	RGATCY	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	379
BtsIMutI	CAGTG	2 cut(s)	139, 159
Cac8I	GCNNGC	1 cut(s)	42
Csp6I	GTAC	2 cut(s)	181, 232
CviAII	CATG	4 cut(s)	127, 149, 188, 331
CviJI	RGCY	6 cut(s)	72, 96, 172, 239, 303, 370
CviKI_1	RGCY	6 cut(s)	72, 96, 172, 239, 303, 370
CviQI	GTAC	2 cut(s)	181, 232
DdeI	CTNAG	1 cut(s)	162
DpnI	GATC	3 cut(s)	89, 381, 390
DpnII	GATC	3 cut(s)	87, 379, 388
DrdI	GACNNNNNNGTC	1 cut(s)	320
DseDI	GACNNNNNNGTC	1 cut(s)	320
Eco130I	CCWWGG	1 cut(s)	91
EcoT14I	CCWWGG	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	91
FaeI	CATG	4 cut(s)	130, 152, 191, 334
FaiI	YATR	8 cut(s)	99, 128, 150, 189, 236, 332, 359, 397
FaqI	GGGAC	1 cut(s)	159
FatI	CATG	4 cut(s)	126, 148, 187, 330
Fnu4HI	GCNGC	2 cut(s)	170, 371
Fsp4HI	GCNGC	2 cut(s)	170, 371
FspBI	CTAG	3 cut(s)	41, 107, 342
GluI	GCNGC	2 cut(s)	170, 371
Hin1II	CATG	4 cut(s)	130, 152, 191, 334
HphI	GGTGA	2 cut(s)	233, 319
Hpy166II	GTNNAC	1 cut(s)	183
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	1 cut(s)	254
Hpy8I	GTNNAC	1 cut(s)	183
HpyAV	CCTTC	4 cut(s)	50, 145, 170, 284
HpyCH4V	TGCA	3 cut(s)	227, 263, 311
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 245
HpyF3I	CTNAG	1 cut(s)	162
Hsp92II	CATG	4 cut(s)	130, 152, 191, 334
Kzo9I	GATC	3 cut(s)	87, 379, 388
LmnI	GCTCC	1 cut(s)	367
LpnPI	CCDG	6 cut(s)	86, 127, 158, 258, 329, 390
Lsp1109I	GCAGC	2 cut(s)	181, 357
MaeI	CTAG	3 cut(s)	41, 107, 342
MalI	GATC	3 cut(s)	89, 381, 390
MboI	GATC	3 cut(s)	87, 379, 388
MboII	GAAGA	1 cut(s)	20
MflI	RGATCY	1 cut(s)	379
MhlI	GDGCHC	1 cut(s)	161
MluCI	AATT	5 cut(s)	31, 47, 152, 280, 290
MnlI	CCTC	3 cut(s)	14, 73, 211
MroXI	GAANNNNTTC	1 cut(s)	134
MseI	TTAA	1 cut(s)	27
MslI	CAYNNNNRTG	2 cut(s)	188, 329
MspA1I	CMGCKG	1 cut(s)	172
MwoI	GCNNNNNNNGC	2 cut(s)	11, 245
NdeII	GATC	3 cut(s)	87, 379, 388
NheI	GCTAGC	1 cut(s)	40
NlaIII	CATG	4 cut(s)	130, 152, 191, 334
NlaIV	GGNNCC	1 cut(s)	61
OliI	CACNNNNGTG	1 cut(s)	188
PdmI	GAANNNNTTC	1 cut(s)	134
PkrI	GCNGC	2 cut(s)	171, 372
PspN4I	GGNNCC	1 cut(s)	61
PstI	CTGCAG	1 cut(s)	313
PsuI	RGATCY	1 cut(s)	379
PvuII	CAGCTG	1 cut(s)	172
RsaI	GTAC	2 cut(s)	182, 233
RsaNI	GTAC	2 cut(s)	181, 232
RseI	CAYNNNNRTG	2 cut(s)	188, 329
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	2 cut(s)	170, 371
Sau3AI	GATC	3 cut(s)	87, 379, 388
SduI	GDGCHC	1 cut(s)	161
SetI	ASST	8 cut(s)	25, 65, 108, 174, 206, 241, 305, 372
SfcI	CTRYAG	1 cut(s)	309
SmiMI	CAYNNNNRTG	2 cut(s)	188, 329
Sse9I	AATT	5 cut(s)	31, 47, 152, 280, 290
SspMI	CTAG	3 cut(s)	41, 107, 342
StyI	CCWWGG	1 cut(s)	91
TasI	AATT	5 cut(s)	31, 47, 152, 280, 290
TatI	WGTACW	1 cut(s)	231
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TscAI	CASTG	2 cut(s)	146, 166
TseI	GCWGC	2 cut(s)	169, 370
TspDTI	ATGAA	3 cut(s)	143, 165, 347
TspRI	CASTG	2 cut(s)	146, 166
XapI	RAATTY	1 cut(s)	31
XmnI	GAANNNNTTC	1 cut(s)	134
XspI	CTAG	3 cut(s)	41, 107, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.