Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0024356

Physical Location & Seq

Genomic Coordinates Forward (+)

14872405 .. 14872639

Gene Structure 235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1175100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 159 bp

ATGAACCAAGTATTATCAGGACTGGAACACTGTCACAACCACAATGTGCTTCATCGTGATATCAAAGGGTCCAATCTTCTTATCGACAATGGTGGTGTCCTAAAGATTGCTGATTTTGGACTGGCTTCTTCTATGACCCAAATCACAAGCATCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0071944 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

53

Amino Acids

5.64

Weight (kDa)

6.37

Isoelectric Point (pI)

12.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 47	2.1e-18	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	2 - 46	1.1e-10	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024356)

Species	Orthologous Gene IDs
malus_domestica	MD16G1175100.v1.1
rosa_chinensis	RchiOBHm_Chr2g0113391
rosa_roxburghii	Rroxscaffold_2G00125160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AdeI	CACNNNGTG	1 cut(s)	46
AspS9I	GGNCC	1 cut(s)	69
AvaII	GGWCC	1 cut(s)	69
Bme18I	GGWCC	1 cut(s)	69
BmgT120I	GGNCC	1 cut(s)	69
BmiI	GGNNCC	1 cut(s)	70
Bse1I	ACTGG	2 cut(s)	27, 126
BseGI	GGATG	1 cut(s)	150
BseNI	ACTGG	2 cut(s)	27, 126
BspLI	GGNNCC	1 cut(s)	70
BsrI	ACTGG	2 cut(s)	27, 126
Bst4CI	ACNGT	1 cut(s)	32
BstF5I	GGATG	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	150
BtsIMutI	CAGTG	1 cut(s)	28
Cfr13I	GGNCC	1 cut(s)	69
CviJI	RGCY	1 cut(s)	125
CviKI_1	RGCY	1 cut(s)	125
DraIII	CACNNNGTG	1 cut(s)	46
Eco32I	GATATC	1 cut(s)	61
Eco47I	GGWCC	1 cut(s)	69
EcoRV	GATATC	1 cut(s)	61
FaiI	YATR	1 cut(s)	134
FokI	GGATG	1 cut(s)	137
Hpy188III	TCNNGA	2 cut(s)	18, 56
HpyCH4III	ACNGT	1 cut(s)	32
LpnPI	CCDG	3 cut(s)	3, 8, 107
MaeIII	GTNAC	1 cut(s)	32
MboII	GAAGA	2 cut(s)	68, 120
NlaIV	GGNNCC	1 cut(s)	70
NmuCI	GTSAC	1 cut(s)	32
PspN4I	GGNNCC	1 cut(s)	70
PspPI	GGNCC	1 cut(s)	69
Sau96I	GGNCC	1 cut(s)	69
SgeI	CNNG	5 cut(s)	20, 30, 35, 68, 134
SinI	GGWCC	1 cut(s)	69
TaaI	ACNGT	1 cut(s)	32
TaqI	TCGA	1 cut(s)	84
TscAI	CASTG	1 cut(s)	35
TseFI	GTSAC	1 cut(s)	32
Tsp45I	GTSAC	1 cut(s)	32
TspDTI	ATGAA	2 cut(s)	17, 41
TspRI	CASTG	1 cut(s)	35
VpaK11BI	GGWCC	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.