Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0024356

Physical Location & Seq

Genomic Coordinates Reverse (-)

59747380 .. 59748532

Gene Structure 1153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00125160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGGAGCATGATCTTGCGGGGATTGCAGCAAGACACGGGATCAAGTTCAACGAAGCACGTATCAAATGTTACATACAACAGCTTCTTCATGGACTTGAACATTGTCACAGTCATGGTATTTTGCATCGTGACATCAAAGGATCAAATCTTTTGATAGACAATTATGGCAACTATGTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0097472 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

60

Amino Acids

6.83

Weight (kDa)

7.05

Isoelectric Point (pI)

4.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	4 - 57	4.8e-14	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024356)

Species	Orthologous Gene IDs
malus_domestica	MD16G1175100.v1.1
rosa_chinensis	RchiOBHm_Chr2g0113391
rosa_roxburghii	Rroxscaffold_2G00125160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	17
AclWI	GGATC	2 cut(s)	47, 148
AgsI	TTSAA	2 cut(s)	49, 98
AluBI	AGCT	1 cut(s)	82
AluI	AGCT	1 cut(s)	82
AlwI	GGATC	2 cut(s)	47, 148
ApeKI	GCWGC	1 cut(s)	26
BbvI	GCAGC	1 cut(s)	38
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
BmsI	GCATC	1 cut(s)	133
BsaAI	YACGTR	1 cut(s)	59
BseXI	GCAGC	1 cut(s)	38
Bsp143I	GATC	3 cut(s)	10, 39, 140
BspACI	CCGC	1 cut(s)	17
BspPI	GGATC	2 cut(s)	47, 148
BssMI	GATC	3 cut(s)	10, 39, 140
Bst4CI	ACNGT	1 cut(s)	110
BstBAI	YACGTR	1 cut(s)	59
BstKTI	GATC	3 cut(s)	13, 42, 143
BstMBI	GATC	3 cut(s)	10, 39, 140
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstV1I	GCAGC	1 cut(s)	38
CviAII	CATG	3 cut(s)	8, 89, 113
CviJI	RGCY	1 cut(s)	82
CviKI_1	RGCY	1 cut(s)	82
DpnI	GATC	3 cut(s)	12, 41, 142
DpnII	GATC	3 cut(s)	10, 39, 140
FaeI	CATG	3 cut(s)	11, 92, 116
FaiI	YATR	6 cut(s)	9, 74, 90, 114, 165, 174
FatI	CATG	3 cut(s)	7, 88, 112
FauI	CCCGC	1 cut(s)	10
Fnu4HI	GCNGC	1 cut(s)	27
Fsp4HI	GCNGC	1 cut(s)	27
FspEI	CC	9 cut(s)	2, 3, 4, 21, 22, 75, 99, 123, 150
GluI	GCNGC	1 cut(s)	27
Hin1II	CATG	3 cut(s)	11, 92, 116
Hpy188III	TCNNGA	1 cut(s)	128
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4IV	ACGT	1 cut(s)	58
HpyCH4V	TGCA	2 cut(s)	26, 124
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpySE526I	ACGT	1 cut(s)	58
Hsp92II	CATG	3 cut(s)	11, 92, 116
Kzo9I	GATC	3 cut(s)	10, 39, 140
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	1 cut(s)	38
LweI	GCATC	1 cut(s)	133
MaeII	ACGT	1 cut(s)	58
MaeIII	GTNAC	3 cut(s)	68, 104, 128
MalI	GATC	3 cut(s)	12, 41, 142
MboI	GATC	3 cut(s)	10, 39, 140
MboII	GAAGA	1 cut(s)	77
MluCI	AATT	1 cut(s)	160
MslI	CAYNNNNRTG	1 cut(s)	111
MwoI	GCNNNNNNNGC	1 cut(s)	23
NdeII	GATC	3 cut(s)	10, 39, 140
NlaIII	CATG	3 cut(s)	11, 92, 116
NmuCI	GTSAC	2 cut(s)	104, 128
PkrI	GCNGC	1 cut(s)	28
Ppu21I	YACGTR	1 cut(s)	59
RseI	CAYNNNNRTG	1 cut(s)	111
SatI	GCNGC	1 cut(s)	27
Sau3AI	GATC	3 cut(s)	10, 39, 140
SetI	ASST	2 cut(s)	61, 84
SfaNI	GCATC	1 cut(s)	133
SmiMI	CAYNNNNRTG	1 cut(s)	111
Sse9I	AATT	1 cut(s)	160
SsiI	CCGC	1 cut(s)	17
TaaI	ACNGT	1 cut(s)	110
TaiI	ACGT	1 cut(s)	61
TasI	AATT	1 cut(s)	160
TseFI	GTSAC	2 cut(s)	104, 128
TseI	GCWGC	1 cut(s)	26
Tsp45I	GTSAC	2 cut(s)	104, 128
TspDTI	ATGAA	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.