Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0021841

Physical Location & Seq

Genomic Coordinates Reverse (-)

15134027 .. 15134626

Gene Structure 600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1177800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGTCCGACTATGCCACCAAAACGACTGATGAGGAGACGCGAAAAATCTTCTACAGGTGGCGCACCGACGCAGCCATCAGCATGAAACATATAATGGATATGGTCGAAGGTATGGTAGATGACGGCTTTAAGGATGAGGTCAAGGAGCTCTTTGAGCCGTTCTTTGACATAGGCGTACTACCCGCCATTGTCACCCACACCGCTGTCATTGAGGCCTATGCCACTGCCGGCAAGATTAAGGGTGCTTTTGAGGCTTATAAACACATGTCGGCTGTTGGGATTATGCCGAACTGCTACACTTATAGTGTCTTCATCAAGGCACTTGCTACTGACCCCAACTTCTTTGGGGATGCCAAGAAGTACTGGCTGGAGATGATGGAGAAGAGGATGCATCCCAATGCTGCTACCTACACCGCAGTTTTTGGGGGCTTCGCGAGGCAAGGGGACAGGGCGGTAGAGGACAGGAGTGAGTTTTTACGGGTAATGAAAAGCAAGGGATTTGTGCCGGACGAGGAGGCTGTGGGTGAGGTTCTGAAAGGACGAACTGGAGAAGCGGTTAGCTGCATCATGAACATTCTGTTTGGCAAGTATAACTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

200

Amino Acids

22.46

Weight (kDa)

5.64

Isoelectric Point (pI)

38.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	58 - 108	5.7e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	61 - 109	8.2e-12	PPR repeat family
TPR_24	PF23276	66 - 149	4.3e-07	Fungal tetratrico peptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021841)

Species	Orthologous Gene IDs
malus_domestica	MD16G1177800.v1.1 MD16G1193600.v1.1
pyrus_communis	pycom16g14920 pycom16g16330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	258
AccII	CGCG	2 cut(s)	40, 434
AciI	CCGC	5 cut(s)	183, 201, 414, 452, 554
AfaI	GTAC	2 cut(s)	177, 362
AflIII	ACRYGT	1 cut(s)	264
AluBI	AGCT	2 cut(s)	148, 561
AluI	AGCT	2 cut(s)	148, 561
Alw21I	GWGCWC	1 cut(s)	150
Alw26I	GTCTC	1 cut(s)	29
AoxI	GGCC	1 cut(s)	213
ApeKI	GCWGC	3 cut(s)	71, 401, 561
AspLEI	GCGC	1 cut(s)	63
AsuHPI	GGTGA	2 cut(s)	184, 536
BanII	GRGCYC	1 cut(s)	150
BbsI	GAAGAC	1 cut(s)	301
Bbv12I	GWGCWC	1 cut(s)	150
BbvI	GCAGC	3 cut(s)	83, 388, 548
BccI	CCATC	2 cut(s)	83, 370
BceAI	ACGGC	2 cut(s)	139, 142
BcoDI	GTCTC	1 cut(s)	29
BfmI	CTRYAG	1 cut(s)	52
BisI	GCNGC	3 cut(s)	72, 402, 562
BlsI	GCNGC	3 cut(s)	73, 403, 563
BmcAI	AGTACT	1 cut(s)	362
BmsI	GCATC	4 cut(s)	340, 378, 400, 573
BpiI	GAAGAC	1 cut(s)	301
BpmI	CTGGAG	2 cut(s)	389, 567
BsaXI	ACNNNNNCTCC	2 cut(s)	540, 570
Bse118I	RCCGGY	1 cut(s)	227
Bse1I	ACTGG	2 cut(s)	368, 550
BseGI	GGATG	4 cut(s)	139, 355, 391, 393
BseNI	ACTGG	2 cut(s)	368, 550
BseRI	GAGGAG	2 cut(s)	47, 527
BseXI	GCAGC	3 cut(s)	83, 388, 548
Bsh1236I	CGCG	2 cut(s)	40, 434
BshFI	GGCC	1 cut(s)	215
BsiHKAI	GWGCWC	1 cut(s)	150
BsiSI	CCGG	2 cut(s)	228, 506
BslFI	GGGAC	1 cut(s)	458
BsmAI	GTCTC	1 cut(s)	29
BsmBI	CGTCTC	1 cut(s)	29
BsmFI	GGGAC	1 cut(s)	458
BsnI	GGCC	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp68I	TCGCGA	1 cut(s)	434
BspACI	CCGC	5 cut(s)	183, 201, 414, 452, 554
BspANI	GGCC	1 cut(s)	215
BspFNI	CGCG	2 cut(s)	40, 434
BspHI	TCATGA	1 cut(s)	567
BsrFI	RCCGGY	1 cut(s)	227
BsrI	ACTGG	2 cut(s)	368, 550
BssAI	RCCGGY	1 cut(s)	227
Bst6I	CTCTTC	1 cut(s)	377
BstC8I	GCNNGC	1 cut(s)	229
BstF5I	GGATG	4 cut(s)	139, 355, 391, 393
BstFNI	CGCG	2 cut(s)	40, 434
BstHHI	GCGC	1 cut(s)	63
BstMAI	GTCTC	1 cut(s)	29
BstMWI	GCNNNNNNNGC	2 cut(s)	154, 251
BstNSI	RCATGY	1 cut(s)	268
BstSFI	CTRYAG	1 cut(s)	52
BstUI	CGCG	2 cut(s)	40, 434
BstV1I	GCAGC	3 cut(s)	83, 388, 548
BstV2I	GAAGAC	1 cut(s)	301
BsuRI	GGCC	1 cut(s)	215
BtsCI	GGATG	4 cut(s)	139, 355, 391, 393
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	222
BtuMI	TCGCGA	1 cut(s)	434
Cac8I	GCNNGC	1 cut(s)	229
CciI	TCATGA	1 cut(s)	567
CfoI	GCGC	1 cut(s)	63
Cfr10I	RCCGGY	1 cut(s)	227
CseI	GACGC	2 cut(s)	46, 77
Csp6I	GTAC	2 cut(s)	176, 361
CviAII	CATG	3 cut(s)	82, 265, 568
CviQI	GTAC	2 cut(s)	176, 361
Eam1104I	CTCTTC	1 cut(s)	377
EarI	CTCTTC	1 cut(s)	377
Ecl136II	GAGCTC	1 cut(s)	148
Eco147I	AGGCCT	1 cut(s)	215
Eco24I	GRGCYC	1 cut(s)	150
Eco53kI	GAGCTC	1 cut(s)	148
EcoICRI	GAGCTC	1 cut(s)	148
EcoT22I	ATGCAT	1 cut(s)	393
EcoT38I	GRGCYC	1 cut(s)	150
Esp3I	CGTCTC	1 cut(s)	29
FaeI	CATG	3 cut(s)	85, 268, 571
FalI	AAGNNNNNCTT	3 cut(s)	134, 166, 578
FaqI	GGGAC	1 cut(s)	458
FatI	CATG	3 cut(s)	81, 264, 567
FauI	CCCGC	1 cut(s)	190
Fnu4HI	GCNGC	3 cut(s)	72, 402, 562
FokI	GGATG	4 cut(s)	146, 362, 378, 400
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	3 cut(s)	72, 402, 562
GlaI	GCGC	1 cut(s)	62
GluI	GCNGC	3 cut(s)	72, 402, 562
GsuI	CTGGAG	2 cut(s)	389, 567
HaeIII	GGCC	1 cut(s)	215
HapII	CCGG	2 cut(s)	228, 506
HgaI	GACGC	2 cut(s)	46, 77
HhaI	GCGC	1 cut(s)	63
Hin1II	CATG	3 cut(s)	85, 268, 571
Hin6I	GCGC	1 cut(s)	61
HinP1I	GCGC	1 cut(s)	61
HpaII	CCGG	2 cut(s)	228, 506
HphI	GGTGA	2 cut(s)	184, 536
Hpy188I	TCNGA	2 cut(s)	7, 534
Hpy188III	TCNNGA	2 cut(s)	433, 568
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	1 cut(s)	101
HpyCH4V	TGCA	2 cut(s)	391, 564
HpyF10VI	GCNNNNNNNGC	2 cut(s)	154, 251
Hsp92II	CATG	3 cut(s)	85, 268, 571
HspAI	GCGC	1 cut(s)	61
KroI	GCCGGC	1 cut(s)	227
KroNI	GCCGGC	1 cut(s)	229
LmnI	GCTCC	1 cut(s)	145
LpnPI	CCDG	8 cut(s)	40, 241, 349, 353, 433, 448, 519, 531
Lsp1109I	GCAGC	3 cut(s)	83, 388, 548
LweI	GCATC	4 cut(s)	340, 378, 400, 573
MaeIII	GTNAC	1 cut(s)	190
MboII	GAAGA	3 cut(s)	40, 301, 394
MhlI	GDGCHC	1 cut(s)	150
MmeI	TCCRAC	1 cut(s)	30
Mph1103I	ATGCAT	1 cut(s)	393
MroNI	GCCGGC	1 cut(s)	227
MseI	TTAA	2 cut(s)	129, 237
MslI	CAYNNNNRTG	2 cut(s)	80, 396
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	2 cut(s)	228, 506
MvnI	CGCG	2 cut(s)	40, 434
MwoI	GCNNNNNNNGC	2 cut(s)	154, 251
NaeI	GCCGGC	1 cut(s)	229
NgoMIV	GCCGGC	1 cut(s)	227
NlaIII	CATG	3 cut(s)	85, 268, 571
NmuCI	GTSAC	1 cut(s)	190
NruI	TCGCGA	1 cut(s)	434
NsiI	ATGCAT	1 cut(s)	393
NspI	RCATGY	1 cut(s)	268
PagI	TCATGA	1 cut(s)	567
PceI	AGGCCT	1 cut(s)	215
PciI	ACATGT	1 cut(s)	264
PdiI	GCCGGC	1 cut(s)	229
PkrI	GCNGC	3 cut(s)	73, 403, 563
PscI	ACATGT	1 cut(s)	264
PsiI	TTATAA	1 cut(s)	258
Psp124BI	GAGCTC	1 cut(s)	150
RruI	TCGCGA	1 cut(s)	434
RsaI	GTAC	2 cut(s)	177, 362
RsaNI	GTAC	2 cut(s)	176, 361
RseI	CAYNNNNRTG	2 cut(s)	80, 396
SacI	GAGCTC	1 cut(s)	150
SaqAI	TTAA	2 cut(s)	129, 237
SatI	GCNGC	3 cut(s)	72, 402, 562
ScaI	AGTACT	1 cut(s)	362
SduI	GDGCHC	1 cut(s)	150
SetI	ASST	7 cut(s)	59, 112, 141, 150, 410, 531, 563
SfaNI	GCATC	4 cut(s)	340, 378, 400, 573
SfcI	CTRYAG	1 cut(s)	52
SmiMI	CAYNNNNRTG	2 cut(s)	80, 396
SseBI	AGGCCT	1 cut(s)	215
SsiI	CCGC	5 cut(s)	183, 201, 414, 452, 554
SstI	GAGCTC	1 cut(s)	150
StuI	AGGCCT	1 cut(s)	215
TaqI	TCGA	1 cut(s)	105
TatI	WGTACW	1 cut(s)	360
Tru1I	TTAA	2 cut(s)	129, 237
Tru9I	TTAA	2 cut(s)	129, 237
TscAI	CASTG	1 cut(s)	229
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	3 cut(s)	71, 401, 561
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	4 cut(s)	98, 301, 500, 584
TspRI	CASTG	1 cut(s)	229
XceI	RCATGY	1 cut(s)	268
ZrmI	AGTACT	1 cut(s)	362
Zsp2I	ATGCAT	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.