MD16G1261900.v1.1

Belongs to the sterol desaturase family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Forward (+)
32525262 .. 32526815
1554 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1261900.v1.1.491

Sequence Viewer

Length: 381 bp
ATGCTTTTCCTCACAAGAAATCGCCGGATCATCCAACAGGGCGTTGATTTCAAGCAGATTGACAAAGAATGCCACTGGGATAATTTCATAATTCTTCAAGGGATAATTGCGTCCATTGTCTGCTGTTTGCTTCCGTCATTTGTGCAGAAGCTTCCCTTGTGGAGTACAATAGGATTTATTACCACTCTGGTACTGCACGTGGGAGTTTCAGAGCCTTTATATTATTGGCTTCACAGACGTTTTCACGGCAACAGCTACTTTTTGAGTAGAAAGTATTATTCGCTCCACAGAATTGCATTTCCAGCTGGAACTCCAATGTTATTGGCTCCAACATCTACTTTTTGTATACAGCTGGAAATGCAACCCTATTGGAGCATCTGA

Protein Analysis

127

Amino Acids

14.81

Weight (kDa)

9.24

Isoelectric Point (pI)

43.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028517)

Species Orthologous Gene IDs
malus_domestica MD16G1261900.v1.1
prunus_persica Prupe.7G050800_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 346
AclWI GGATC 1 cut(s) 35
AcvI CACGTG 1 cut(s) 199
AfaI GTAC 2 cut(s) 166, 192
AgsI TTSAA 2 cut(s) 52, 98
AluBI AGCT 4 cut(s) 151, 255, 305, 352
AluI AGCT 4 cut(s) 151, 255, 305, 352
AlwI GGATC 1 cut(s) 35
BbrPI CACGTG 1 cut(s) 199
BceAI ACGGC 1 cut(s) 262
BmiI GGNNCC 1 cut(s) 327
BmrI ACTGGG 1 cut(s) 85
BmuI ACTGGG 1 cut(s) 85
BsaAI YACGTR 1 cut(s) 199
Bse1I ACTGG 1 cut(s) 80
BseGI GGATG 1 cut(s) 30
BseNI ACTGG 1 cut(s) 80
BsgI GTGCAG 2 cut(s) 164, 179
BsiSI CCGG 1 cut(s) 25
BsmI GAATGC 1 cut(s) 74
Bsp143I GATC 1 cut(s) 27
BspLI GGNNCC 1 cut(s) 327
BspPI GGATC 1 cut(s) 35
BsrI ACTGG 1 cut(s) 80
BssMI GATC 1 cut(s) 27
BssNAI GTATAC 1 cut(s) 347
Bst1107I GTATAC 1 cut(s) 347
BstBAI YACGTR 1 cut(s) 199
BstF5I GGATG 1 cut(s) 30
BstKTI GATC 1 cut(s) 30
BstMBI GATC 1 cut(s) 27
BstMWI GCNNNNNNNGC 2 cut(s) 302, 358
BstZ17I GTATAC 1 cut(s) 347
BtsCI GGATG 1 cut(s) 30
BtsIMutI CAGTG 1 cut(s) 73
CseI GACGC 1 cut(s) 99
Csp6I GTAC 2 cut(s) 165, 191
CviJI RGCY 7 cut(s) 151, 214, 229, 255, 305, 326, 352
CviKI_1 RGCY 7 cut(s) 151, 214, 229, 255, 305, 326, 352
CviQI GTAC 2 cut(s) 165, 191
DpnI GATC 1 cut(s) 29
DpnII GATC 1 cut(s) 27
Eco72I CACGTG 1 cut(s) 199
FaiI YATR 3 cut(s) 89, 220, 347
FalI AAGNNNNNCTT 2 cut(s) 140, 172
FblI GTMKAC 1 cut(s) 346
FokI GGATG 1 cut(s) 17
HapII CCGG 1 cut(s) 25
HgaI GACGC 1 cut(s) 99
HindIII AAGCTT 1 cut(s) 149
HpaII CCGG 1 cut(s) 25
Hpy166II GTNNAC 1 cut(s) 347
Hpy188I TCNGA 2 cut(s) 211, 380
Hpy8I GTNNAC 1 cut(s) 347
HpyCH4IV ACGT 2 cut(s) 198, 238
HpyCH4V TGCA 4 cut(s) 145, 196, 296, 361
HpyF10VI GCNNNNNNNGC 2 cut(s) 302, 358
HpySE526I ACGT 2 cut(s) 198, 238
Kzo9I GATC 1 cut(s) 27
LmnI GCTCC 3 cut(s) 288, 331, 372
LpnPI CCDG 7 cut(s) 23, 38, 61, 173, 291, 315, 338
MaeII ACGT 2 cut(s) 198, 238
MalI GATC 1 cut(s) 29
MboI GATC 1 cut(s) 27
MboII GAAGA 1 cut(s) 86
MluCI AATT 4 cut(s) 82, 90, 105, 291
MmeI TCCRAC 2 cut(s) 58, 353
MnlI CCTC 1 cut(s) 20
MspA1I CMGCKG 2 cut(s) 305, 352
MspI CCGG 1 cut(s) 25
Mva1269I GAATGC 1 cut(s) 74
MwoI GCNNNNNNNGC 2 cut(s) 302, 358
NdeII GATC 1 cut(s) 27
NlaIV GGNNCC 1 cut(s) 327
PctI GAATGC 1 cut(s) 74
PmaCI CACGTG 1 cut(s) 199
PmlI CACGTG 1 cut(s) 199
Ppu21I YACGTR 1 cut(s) 199
PspCI CACGTG 1 cut(s) 199
PspN4I GGNNCC 1 cut(s) 327
PvuII CAGCTG 2 cut(s) 305, 352
RsaI GTAC 2 cut(s) 166, 192
RsaNI GTAC 2 cut(s) 165, 191
Sau3AI GATC 1 cut(s) 27
SetI ASST 6 cut(s) 153, 201, 241, 257, 307, 354
Sse9I AATT 4 cut(s) 82, 90, 105, 291
TaiI ACGT 2 cut(s) 201, 241
TasI AATT 4 cut(s) 82, 90, 105, 291
TatI WGTACW 1 cut(s) 164
TscAI CASTG 1 cut(s) 80
TspDTI ATGAA 1 cut(s) 76
TspGWI ACGGA 1 cut(s) 123
TspRI CASTG 1 cut(s) 80
XmiI GTMKAC 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.