MD16G1277900.v1.1

protein phosphatase 2C 55

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
Physical Location & Seq
Reverse (-)
37720805 .. 37721376
572 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1277900.v1.1.491

Sequence Viewer

Length: 387 bp
ATGAATGCAAAAGAACAGAGAATAGTCCTTGGGACTGATGGCTTGCTGGACAACATGTTTCCAAGCGAGATTGAGGAGGTTCTTGTGGCAAATAGTACGTCAAAGTCAAAAGATAGGGAATCTGACCGTAGTGGTGGTGATGGTGATGGTGATTTTGATTGCTATGCATTGGCTTTGAGCATAGCGAATCTCGCCCTCCATAGCTCGTTGGATAAGTACAACCTTAGCCCTTTTTCAGAAAACGCTAAGAAAGCTGGATTTGAGTACGTAGGAGGCAAGATCGACGACATTACTGTTATTGTTGCACGCGTTTGTAAACACGGAAATTCCTGCGATGAACGAGACAAGAAACACGTGTACAAAATAATATTTGTATTGATGATTTAG
Functional Annotation

Protein Analysis

129

Amino Acids

14.08

Weight (kDa)

5.13

Isoelectric Point (pI)

35.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028548)

Species Orthologous Gene IDs
malus_domestica MD16G1277900.v1.1
pyrus_communis pycom16g24790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 309
AcsI RAATTY 1 cut(s) 325
AcvI CACGTG 1 cut(s) 355
AfaI GTAC 4 cut(s) 97, 218, 266, 359
AflIII ACRYGT 4 cut(s) 54, 307, 352, 354
AluBI AGCT 2 cut(s) 204, 254
AluI AGCT 2 cut(s) 204, 254
Alw26I GTCTC 1 cut(s) 336
ApoI RAATTY 1 cut(s) 325
ArsI GACNNNNNNTTYG 2 cut(s) 83, 115
AsuHPI GGTGA 3 cut(s) 149, 155, 161
BbrPI CACGTG 1 cut(s) 355
BccI CCATC 3 cut(s) 32, 134, 140
BcoDI GTCTC 1 cut(s) 336
Bpu10I CCTNAGC 1 cut(s) 224
BsaAI YACGTR 2 cut(s) 268, 355
BsaJI CCNNGG 1 cut(s) 28
BseDI CCNNGG 1 cut(s) 28
BseRI GAGGAG 1 cut(s) 89
Bsh1236I CGCG 1 cut(s) 309
BslFI GGGAC 1 cut(s) 46
BsmAI GTCTC 1 cut(s) 336
BsmFI GGGAC 1 cut(s) 46
BsmI GAATGC 1 cut(s) 10
Bsp1407I TGTACA 1 cut(s) 357
Bsp143I GATC 1 cut(s) 279
BspFNI CGCG 1 cut(s) 309
BsrGI TGTACA 1 cut(s) 357
BssECI CCNNGG 1 cut(s) 28
BssMI GATC 1 cut(s) 279
BssT1I CCWWGG 1 cut(s) 28
Bst4CI ACNGT 2 cut(s) 128, 295
BstAUI TGTACA 1 cut(s) 357
BstBAI YACGTR 2 cut(s) 268, 355
BstC8I GCNNGC 2 cut(s) 44, 307
BstDEI CTNAG 2 cut(s) 224, 246
BstFNI CGCG 1 cut(s) 309
BstKTI GATC 1 cut(s) 282
BstMAI GTCTC 1 cut(s) 336
BstMBI GATC 1 cut(s) 279
BstMWI GCNNNNNNNGC 2 cut(s) 191, 251
BstNSI RCATGY 1 cut(s) 58
BstSNI TACGTA 1 cut(s) 268
BstUI CGCG 1 cut(s) 309
BtgZI GCGATG 1 cut(s) 348
Cac8I GCNNGC 2 cut(s) 44, 307
Csp6I GTAC 4 cut(s) 96, 217, 265, 358
CviAII CATG 1 cut(s) 55
CviJI RGCY 5 cut(s) 42, 173, 204, 228, 254
CviKI_1 RGCY 5 cut(s) 42, 173, 204, 228, 254
CviQI GTAC 4 cut(s) 96, 217, 265, 358
DdeI CTNAG 2 cut(s) 224, 246
DpnI GATC 1 cut(s) 281
DpnII GATC 1 cut(s) 279
Eco105I TACGTA 1 cut(s) 268
Eco130I CCWWGG 1 cut(s) 28
Eco72I CACGTG 1 cut(s) 355
EcoT14I CCWWGG 1 cut(s) 28
EcoT22I ATGCAT 1 cut(s) 169
ErhI CCWWGG 1 cut(s) 28
FaeI CATG 1 cut(s) 58
FaiI YATR 4 cut(s) 56, 165, 182, 201
FaqI GGGAC 1 cut(s) 46
FatI CATG 1 cut(s) 54
Hin1II CATG 1 cut(s) 58
HinfI GANTC 2 cut(s) 119, 187
HphI GGTGA 3 cut(s) 149, 155, 161
Hpy166II GTNNAC 2 cut(s) 317, 358
Hpy188I TCNGA 2 cut(s) 124, 238
Hpy8I GTNNAC 2 cut(s) 317, 358
Hpy99I CGWCG 1 cut(s) 287
HpyCH4III ACNGT 2 cut(s) 128, 295
HpyCH4IV ACGT 3 cut(s) 98, 267, 354
HpyCH4V TGCA 3 cut(s) 8, 167, 305
HpyF10VI GCNNNNNNNGC 2 cut(s) 191, 251
HpyF3I CTNAG 2 cut(s) 224, 246
HpySE526I ACGT 3 cut(s) 98, 267, 354
Hsp92II CATG 1 cut(s) 58
Kzo9I GATC 1 cut(s) 279
LpnPI CCDG 3 cut(s) 32, 240, 343
MaeII ACGT 3 cut(s) 98, 267, 354
MalI GATC 1 cut(s) 281
MboI GATC 1 cut(s) 279
MluCI AATT 1 cut(s) 325
MluI ACGCGT 1 cut(s) 307
MmeI TCCRAC 1 cut(s) 189
MnlI CCTC 4 cut(s) 67, 70, 206, 266
Mph1103I ATGCAT 1 cut(s) 169
Mva1269I GAATGC 1 cut(s) 10
MvnI CGCG 1 cut(s) 309
MwoI GCNNNNNNNGC 2 cut(s) 191, 251
NdeII GATC 1 cut(s) 279
NlaIII CATG 1 cut(s) 58
NsiI ATGCAT 1 cut(s) 169
NspI RCATGY 1 cut(s) 58
PciI ACATGT 1 cut(s) 54
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 2 cut(s) 119, 187
PmaCI CACGTG 1 cut(s) 355
PmlI CACGTG 1 cut(s) 355
Ppu21I YACGTR 2 cut(s) 268, 355
PscI ACATGT 1 cut(s) 54
PspCI CACGTG 1 cut(s) 355
RsaI GTAC 4 cut(s) 97, 218, 266, 359
RsaNI GTAC 4 cut(s) 96, 217, 265, 358
Sau3AI GATC 1 cut(s) 279
SetI ASST 7 cut(s) 81, 101, 206, 225, 256, 270, 357
SnaBI TACGTA 1 cut(s) 268
Sse9I AATT 1 cut(s) 325
SspI AATATT 1 cut(s) 369
StyI CCWWGG 1 cut(s) 28
TaaI ACNGT 2 cut(s) 128, 295
TaiI ACGT 3 cut(s) 101, 270, 357
TaqI TCGA 1 cut(s) 282
TasI AATT 1 cut(s) 325
TatI WGTACW 2 cut(s) 216, 357
TfiI GAWTC 2 cut(s) 119, 187
TspDTI ATGAA 2 cut(s) 17, 351
TspGWI ACGGA 1 cut(s) 336
XapI RAATTY 1 cut(s) 325
XceI RCATGY 1 cut(s) 58
Zsp2I ATGCAT 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.