pycom16g24790

protein phosphatase 2C 55

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Reverse (-)
26462258 .. 26462578
321 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g24790.1

Sequence Viewer

Length: 321 bp
ATGTTTCCAAGCGAGATTGAGGAGGTTCTTGTGGCAAATAGTACGTCAAATTCGAAAGATAGAGAATCTGACCGCAGTGGTGGTGATGGTGATGGTGATGGTGATGGTGATTTTGATTGCGATGCATTGGCTTCGAGCATAGTGAATCTCGCTCTCTATAACTCGTTCGATAAGTACAACCCTAGCCCTTTTTCAGAAAACGCTAAGAAAGCTGGATTTGAGTACGTAGGAGGCAAGATCGACGACATTACTGTTATTGTTGCACGCGTTGTAGCTAGGAACAGAAAATCGTCCCACACAAACAGAGCAACAACACACTAA
Functional Annotation

Protein Analysis

107

Amino Acids

11.42

Weight (kDa)

4.74

Isoelectric Point (pI)

41.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0028548)

Species Orthologous Gene IDs
malus_domestica MD16G1277900.v1.1
pyrus_communis pycom16g24790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 267
AciI CCGC 1 cut(s) 73
AcsI RAATTY 1 cut(s) 49
AfaI GTAC 3 cut(s) 43, 176, 224
AflIII ACRYGT 1 cut(s) 265
AluBI AGCT 2 cut(s) 212, 275
AluI AGCT 2 cut(s) 212, 275
ApoI RAATTY 1 cut(s) 49
ArsI GACNNNNNNTTYG 2 cut(s) 29, 61
AsuHPI GGTGA 5 cut(s) 95, 101, 107, 113, 119
AsuII TTCGAA 1 cut(s) 53
BccI CCATC 4 cut(s) 80, 86, 92, 98
BcgI CGANNNNNNTGC 2 cut(s) 114, 148
BfaI CTAG 2 cut(s) 183, 276
BmsI GCATC 1 cut(s) 112
Bpu14I TTCGAA 1 cut(s) 53
BsaAI YACGTR 1 cut(s) 226
BseRI GAGGAG 1 cut(s) 35
Bsh1236I CGCG 1 cut(s) 267
BslFI GGGAC 1 cut(s) 277
BsmFI GGGAC 1 cut(s) 277
Bsp119I TTCGAA 1 cut(s) 53
Bsp143I GATC 1 cut(s) 237
BspACI CCGC 1 cut(s) 73
BspFNI CGCG 1 cut(s) 267
BspT104I TTCGAA 1 cut(s) 53
BssMI GATC 1 cut(s) 237
Bst4CI ACNGT 1 cut(s) 253
BstBAI YACGTR 1 cut(s) 226
BstBI TTCGAA 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 265
BstDEI CTNAG 1 cut(s) 204
BstFNI CGCG 1 cut(s) 267
BstKTI GATC 1 cut(s) 240
BstMBI GATC 1 cut(s) 237
BstMWI GCNNNNNNNGC 1 cut(s) 209
BstSNI TACGTA 1 cut(s) 226
BstUI CGCG 1 cut(s) 267
BtgZI GCGATG 1 cut(s) 135
BtsI GCAGTG 1 cut(s) 82
BtsIMutI CAGTG 1 cut(s) 82
Cac8I GCNNGC 1 cut(s) 265
Csp6I GTAC 3 cut(s) 42, 175, 223
CviJI RGCY 4 cut(s) 131, 186, 212, 275
CviKI_1 RGCY 4 cut(s) 131, 186, 212, 275
CviQI GTAC 3 cut(s) 42, 175, 223
DdeI CTNAG 1 cut(s) 204
DpnI GATC 1 cut(s) 239
DpnII GATC 1 cut(s) 237
Eco105I TACGTA 1 cut(s) 226
EcoT22I ATGCAT 1 cut(s) 127
FaiI YATR 2 cut(s) 140, 159
FaqI GGGAC 1 cut(s) 277
FspBI CTAG 2 cut(s) 183, 276
HinfI GANTC 2 cut(s) 65, 145
HphI GGTGA 5 cut(s) 95, 101, 107, 113, 119
Hpy188I TCNGA 2 cut(s) 70, 196
Hpy99I CGWCG 1 cut(s) 245
HpyCH4III ACNGT 1 cut(s) 253
HpyCH4IV ACGT 2 cut(s) 44, 225
HpyCH4V TGCA 2 cut(s) 125, 263
HpyF10VI GCNNNNNNNGC 1 cut(s) 209
HpyF3I CTNAG 1 cut(s) 204
HpySE526I ACGT 2 cut(s) 44, 225
Kzo9I GATC 1 cut(s) 237
LpnPI CCDG 1 cut(s) 198
LweI GCATC 1 cut(s) 112
MaeI CTAG 2 cut(s) 183, 276
MaeII ACGT 2 cut(s) 44, 225
MalI GATC 1 cut(s) 239
MboI GATC 1 cut(s) 237
MluCI AATT 1 cut(s) 49
MluI ACGCGT 1 cut(s) 265
MnlI CCTC 3 cut(s) 13, 16, 224
Mph1103I ATGCAT 1 cut(s) 127
MvnI CGCG 1 cut(s) 267
MwoI GCNNNNNNNGC 1 cut(s) 209
NdeII GATC 1 cut(s) 237
NsiI ATGCAT 1 cut(s) 127
NspV TTCGAA 1 cut(s) 53
PcsI WCGNNNNNNNCGW 1 cut(s) 50
PfeI GAWTC 2 cut(s) 65, 145
Ppu21I YACGTR 1 cut(s) 226
RsaI GTAC 3 cut(s) 43, 176, 224
RsaNI GTAC 3 cut(s) 42, 175, 223
Sau3AI GATC 1 cut(s) 237
SetI ASST 5 cut(s) 27, 47, 214, 228, 277
SfaNI GCATC 1 cut(s) 112
SfuI TTCGAA 1 cut(s) 53
SnaBI TACGTA 1 cut(s) 226
Sse9I AATT 1 cut(s) 49
SsiI CCGC 1 cut(s) 73
SspMI CTAG 2 cut(s) 183, 276
TaaI ACNGT 1 cut(s) 253
TaiI ACGT 2 cut(s) 47, 228
TaqI TCGA 4 cut(s) 53, 134, 168, 240
TasI AATT 1 cut(s) 49
TatI WGTACW 1 cut(s) 174
TfiI GAWTC 2 cut(s) 65, 145
TscAI CASTG 1 cut(s) 82
TspRI CASTG 1 cut(s) 82
XapI RAATTY 1 cut(s) 49
XspI CTAG 2 cut(s) 183, 276
Zsp2I ATGCAT 1 cut(s) 127
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.