MD17G1030500.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0021200
Physical Location & Seq
Forward (+)
2205421 .. 2207914
2494 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1030500.v1.1.491

Sequence Viewer

Length: 747 bp
ATGGCGTCCGCGACAAAACTTCTTTCTCCGTTTCGGAAATCCCTAAGTTCACTAATCTCTTCCCGCTCCTCAATCTCTCCTTCCAGGCAATTCTATTATGCCAAGTTTGAACCAGTACTGCGGAATCGCGCCTCAACGTTTCATCGTTACTTCAATTTGCAAAACAATTCTCTTGAGAAATTCTGGTTTTCAGGAAGTAAGTTGAGATACGGAAGCATTCTTGGTGTGACGGTTTTGTTTTGGTCAGTCAGCTTCTTGCCAAATGCTGCATATGCTGTGGAAGGCCAGGATATGTTGGTGAATGATCATAATTTGGGAGCGCCGGGTGCTTTGGATGTGGAGGAAGATAGAAGGGAATTCAGGAAGTTTATGAGGAAATTATGGCTGCCTTTCTTTTTTTGTATTACTGCGTTGGCGTGCTGGGATCATCATATTACACCGCTTGGATTGAAGCTTGCTCTTTTCCTCCTGAGCACCAAGCCTAATCCTTTGTCAGTTTATGTTTTTGTGGAAGAGTTATGTCATCGGCTCAAGCGCAAAGATCCTTGCTTGCATAACAAGCCATTGTTCGCGCATAAGGTTGAAGTTGAAGACTTTAAGCTTCTATGTCTTGCTAAAGTTGAAGTGCAAGACCAGAAGTTCACTTTGGTTGGAATTCTTGGTGGTTGGTGGCATGTGCCAACTTTGGACGCAATCAAGGATCATCTTGTATGTTCTCATAAAGCGGTCACTAAAGCATATACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

249

Amino Acids

28.48

Weight (kDa)

9.44

Isoelectric Point (pI)

51.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021200)

Species Orthologous Gene IDs
malus_domestica MD17G1030500.v1.1
prunus_persica Prupe.3G289300_v2.0.a1 Prupe.3G289300_v2.0.a1 Prupe.3G289300_v2.0.a1
pyrus_communis pycom17g02790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 66
AccII CGCG 3 cut(s) 11, 129, 572
AciI CCGC 5 cut(s) 9, 64, 121, 440, 725
AclI AACGTT 1 cut(s) 137
AclWI GGATC 3 cut(s) 432, 536, 708
AcsI RAATTY 3 cut(s) 179, 356, 654
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 117
AgsI TTSAA 6 cut(s) 110, 154, 451, 584, 590, 623
AjnI CCWGG 2 cut(s) 83, 285
AjuI GAANNNNNNNTTGG 2 cut(s) 629, 661
AluBI AGCT 3 cut(s) 252, 454, 601
AluI AGCT 3 cut(s) 252, 454, 601
Alw21I GWGCWC 1 cut(s) 476
AlwI GGATC 3 cut(s) 432, 536, 708
AoxI GGCC 1 cut(s) 283
ApeKI GCWGC 2 cut(s) 266, 385
ApoI RAATTY 3 cut(s) 179, 356, 654
AspLEI GCGC 4 cut(s) 131, 322, 537, 574
AsuC2I CCSGG 1 cut(s) 324
AsuHPI GGTGA 1 cut(s) 310
BbsI GAAGAC 1 cut(s) 597
Bbv12I GWGCWC 1 cut(s) 476
BbvI GCAGC 2 cut(s) 253, 372
BciT130I CCWGG 2 cut(s) 85, 287
BclI TGATCA 1 cut(s) 304
BcnI CCSGG 1 cut(s) 324
BfoI RGCGCY 1 cut(s) 323
BisI GCNGC 2 cut(s) 267, 386
BlsI GCNGC 2 cut(s) 268, 387
BmcAI AGTACT 1 cut(s) 117
Bme1390I CCNGG 3 cut(s) 85, 287, 324
BmrFI CCNGG 3 cut(s) 85, 287, 324
BpiI GAAGAC 1 cut(s) 597
Bpu10I CCTNAGC 1 cut(s) 470
BpuEI CTTGAG 2 cut(s) 194, 515
BpuMI CCSGG 1 cut(s) 324
BsaHI GRCGYC 1 cut(s) 5
Bse1I ACTGG 1 cut(s) 113
BseBI CCWGG 2 cut(s) 85, 287
BseGI GGATG 1 cut(s) 340
BseMII CTCAG 1 cut(s) 461
BseNI ACTGG 1 cut(s) 113
BseRI GAGGAG 1 cut(s) 58
BseXI GCAGC 2 cut(s) 253, 372
BseYI CCCAGC 1 cut(s) 420
Bsh1236I CGCG 3 cut(s) 11, 129, 572
BshFI GGCC 1 cut(s) 285
BsiHKAI GWGCWC 1 cut(s) 476
BsiSI CCGG 1 cut(s) 323
BsmI GAATGC 1 cut(s) 216
BsnI GGCC 1 cut(s) 285
Bsp1286I GDGCHC 1 cut(s) 476
Bsp143I GATC 4 cut(s) 304, 424, 541, 700
BspACI CCGC 5 cut(s) 9, 64, 121, 440, 725
BspANI GGCC 1 cut(s) 285
BspCNI CTCAG 1 cut(s) 462
BspFNI CGCG 3 cut(s) 11, 129, 572
BspPI GGATC 3 cut(s) 432, 536, 708
BsrBI CCGCTC 1 cut(s) 66
BsrI ACTGG 1 cut(s) 113
BssMI GATC 4 cut(s) 304, 424, 541, 700
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 2 cut(s) 85, 287
Bst4CI ACNGT 1 cut(s) 232
Bst6I CTCTTC 2 cut(s) 64, 507
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 3 cut(s) 418, 456, 551
BstDEI CTNAG 2 cut(s) 44, 470
BstF5I GGATG 1 cut(s) 340
BstFNI CGCG 3 cut(s) 11, 129, 572
BstH2I RGCGCY 1 cut(s) 323
BstHHI GCGC 4 cut(s) 131, 322, 537, 574
BstKTI GATC 4 cut(s) 307, 427, 544, 703
BstMBI GATC 4 cut(s) 304, 424, 541, 700
BstMWI GCNNNNNNNGC 3 cut(s) 272, 326, 559
BstNI CCWGG 2 cut(s) 85, 287
BstNSI RCATGY 1 cut(s) 677
BstSCI CCNGG 3 cut(s) 83, 285, 322
BstUI CGCG 3 cut(s) 11, 129, 572
BstV1I GCAGC 2 cut(s) 253, 372
BstV2I GAAGAC 1 cut(s) 597
BstX2I RGATCY 1 cut(s) 541
BstYI RGATCY 1 cut(s) 541
BsuRI GGCC 1 cut(s) 285
BtsCI GGATG 1 cut(s) 340
Cac8I GCNNGC 3 cut(s) 418, 456, 551
CfoI GCGC 4 cut(s) 131, 322, 537, 574
CseI GACGC 1 cut(s) 698
Csp6I GTAC 1 cut(s) 116
CviAII CATG 1 cut(s) 674
CviJI RGCY 8 cut(s) 252, 285, 385, 454, 481, 529, 562, 601
CviKI_1 RGCY 8 cut(s) 252, 285, 385, 454, 481, 529, 562, 601
CviQI GTAC 1 cut(s) 116
DdeI CTNAG 2 cut(s) 44, 470
DpnI GATC 4 cut(s) 306, 426, 543, 702
DpnII GATC 4 cut(s) 304, 424, 541, 700
Eam1104I CTCTTC 2 cut(s) 64, 507
EarI CTCTTC 2 cut(s) 64, 507
EcoRI GAATTC 2 cut(s) 356, 654
EcoRII CCWGG 2 cut(s) 83, 285
FaeI CATG 1 cut(s) 677
FatI CATG 1 cut(s) 673
FauI CCCGC 1 cut(s) 71
FauNDI CATATG 1 cut(s) 271
FbaI TGATCA 1 cut(s) 304
Fnu4HI GCNGC 2 cut(s) 267, 386
FokI GGATG 1 cut(s) 347
Fsp4HI GCNGC 2 cut(s) 267, 386
GlaI GCGC 4 cut(s) 130, 321, 536, 573
GluI GCNGC 2 cut(s) 267, 386
GsaI CCCAGC 1 cut(s) 424
HaeII RGCGCY 1 cut(s) 323
HaeIII GGCC 1 cut(s) 285
HapII CCGG 1 cut(s) 323
HgaI GACGC 1 cut(s) 698
HhaI GCGC 4 cut(s) 131, 322, 537, 574
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 1 cut(s) 677
Hin6I GCGC 4 cut(s) 129, 320, 535, 572
HinP1I GCGC 4 cut(s) 129, 320, 535, 572
HindIII AAGCTT 2 cut(s) 452, 599
HinfI GANTC 1 cut(s) 124
HpaII CCGG 1 cut(s) 323
HphI GGTGA 1 cut(s) 310
Hpy166II GTNNAC 2 cut(s) 50, 642
Hpy188I TCNGA 1 cut(s) 36
Hpy188III TCNNGA 4 cut(s) 173, 192, 361, 469
Hpy8I GTNNAC 2 cut(s) 50, 642
HpyAV CCTTC 3 cut(s) 90, 275, 345
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4IV ACGT 1 cut(s) 137
HpyCH4V TGCA 4 cut(s) 160, 269, 553, 628
HpyF10VI GCNNNNNNNGC 3 cut(s) 272, 326, 559
HpyF3I CTNAG 2 cut(s) 44, 470
HpySE526I ACGT 1 cut(s) 137
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 1 cut(s) 677
HspAI GCGC 4 cut(s) 129, 320, 535, 572
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 4 cut(s) 304, 424, 541, 700
LmnI GCTCC 2 cut(s) 71, 317
Lsp1109I GCAGC 2 cut(s) 253, 372
MaeII ACGT 1 cut(s) 137
MaeIII GTNAC 3 cut(s) 146, 226, 727
MalI GATC 4 cut(s) 306, 426, 543, 702
MbiI CCGCTC 1 cut(s) 66
MboI GATC 4 cut(s) 304, 424, 541, 700
MboII GAAGA 4 cut(s) 51, 356, 524, 602
MflI RGATCY 1 cut(s) 541
MhlI GDGCHC 1 cut(s) 476
MluCI AATT 8 cut(s) 89, 154, 166, 179, 310, 356, 377, 654
MmeI TCCRAC 1 cut(s) 631
MnlI CCTC 5 cut(s) 79, 142, 334, 366, 476
MseI TTAA 1 cut(s) 597
MspI CCGG 1 cut(s) 323
MspR9I CCNGG 3 cut(s) 85, 287, 324
Mva1269I GAATGC 1 cut(s) 216
MvaI CCWGG 2 cut(s) 85, 287
MvnI CGCG 3 cut(s) 11, 129, 572
MwoI GCNNNNNNNGC 3 cut(s) 272, 326, 559
NciI CCSGG 1 cut(s) 324
NdeI CATATG 1 cut(s) 271
NdeII GATC 4 cut(s) 304, 424, 541, 700
NlaIII CATG 1 cut(s) 677
NmuCI GTSAC 2 cut(s) 226, 727
NspI RCATGY 1 cut(s) 677
PctI GAATGC 1 cut(s) 216
PfeI GAWTC 1 cut(s) 124
PkrI GCNGC 2 cut(s) 268, 387
Psp1406I AACGTT 1 cut(s) 137
Psp6I CCWGG 2 cut(s) 83, 285
PspFI CCCAGC 1 cut(s) 420
PspGI CCWGG 2 cut(s) 83, 285
PsuI RGATCY 1 cut(s) 541
RsaI GTAC 1 cut(s) 117
RsaNI GTAC 1 cut(s) 116
SaqAI TTAA 1 cut(s) 597
SatI GCNGC 2 cut(s) 267, 386
Sau3AI GATC 4 cut(s) 304, 424, 541, 700
ScaI AGTACT 1 cut(s) 117
ScrFI CCNGG 3 cut(s) 85, 287, 324
SduI GDGCHC 1 cut(s) 476
SetI ASST 5 cut(s) 140, 254, 456, 582, 603
SmlI CTYRAG 2 cut(s) 173, 530
SmoI CTYRAG 2 cut(s) 173, 530
Sse9I AATT 8 cut(s) 89, 154, 166, 179, 310, 356, 377, 654
SsiI CCGC 5 cut(s) 9, 64, 121, 440, 725
StyD4I CCNGG 3 cut(s) 83, 285, 322
TaaI ACNGT 1 cut(s) 232
TaiI ACGT 1 cut(s) 140
TasI AATT 8 cut(s) 89, 154, 166, 179, 310, 356, 377, 654
TatI WGTACW 1 cut(s) 115
TfiI GAWTC 1 cut(s) 124
Tru1I TTAA 1 cut(s) 597
Tru9I TTAA 1 cut(s) 597
TseFI GTSAC 2 cut(s) 226, 727
TseI GCWGC 2 cut(s) 266, 385
Tsp45I GTSAC 2 cut(s) 226, 727
TspDTI ATGAA 1 cut(s) 131
TspGWI ACGGA 2 cut(s) 18, 225
XapI RAATTY 3 cut(s) 179, 356, 654
XceI RCATGY 1 cut(s) 677
ZrmI AGTACT 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.