Prupe.3G289300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0021200
Physical Location & Seq
Reverse (-)
26011808 .. 26013908
2101 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G289300.1

Sequence Viewer

Length: 771 bp
ATGGCGAATGCAAGAAAATTTCTTTGTTCATTTCGACAATCCCTAGATTTACTAATCTCTTCCCGTTCCTCAATCTCTCATTCGAGGCAATTCTCTTATGCCGAGTTTGAACCTTTGAAGGCCTTGTTAAAGGGCGTTCAACCTGTGCTACGCAACCGTGCCTCAGCATATTATTGTTCATTGAATATGCAAAGAAATTCTCTTCAGAAATTCTGGTTTTCAGGAGGAAGTATACTAAGATTTGGAAGTATTCTTGGTGTGTCAGTTTTTCTTGGGTCAATCAGCTTCTTGCCAAATGCTGCATATGCCATGGATGGCCATGATATTTTGGTGAATGATCTTAATCTGGAAGTGTCTGGTGCTTCAGATGTGGAGGAAGATCAACATGCCGTCTGGATGTTTGTGAGGAAAATCTGGTTGCCTTTCTTTTTCTTCGTCACTATGTTGGCATACTGGGATGATTCTGTTACACTTGCACCATTTGCATTGAAGCTAATTCTTTTCCTCCTGAGCACCAAGCCTAGTCCTTTCTCAGTTTATGGTTTCGTGGATGAGTTGTGTCATCGACTTAAGCGCGGAGAACCTCACTTATATAACAAGTCATTGTACGCAAGTAAGGTTGAAGTTGAAGACTTTCAGCTTTTGTGTCTGGCTAGAGTTGAAGTAAGAGACCAGAAGTACACTTTGGTTGGAATTCTTGGTGGTTGGTGGCCGTTGCCAACTTTGGATGCAATCAAGCATCGGCTGCTGCATTCTCATAAGGAACTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

257

Amino Acids

29.26

Weight (kDa)

8.83

Isoelectric Point (pI)

43.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021200)

Species Orthologous Gene IDs
malus_domestica MD17G1030500.v1.1
prunus_persica Prupe.3G289300_v2.0.a1 Prupe.3G289300_v2.0.a1 Prupe.3G289300_v2.0.a1
pyrus_communis pycom17g02790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 232
AccII CGCG 1 cut(s) 576
AciI CCGC 1 cut(s) 576
AcoI YGGCCR 2 cut(s) 316, 710
AcsI RAATTY 4 cut(s) 17, 196, 209, 693
AcuI CTGAAG 2 cut(s) 188, 348
AfaI GTAC 2 cut(s) 608, 680
AflII CTTAAG 1 cut(s) 569
AgsI TTSAA 8 cut(s) 110, 118, 140, 184, 490, 623, 629, 662
AjuI GAANNNNNNNTTGG 2 cut(s) 668, 700
AluBI AGCT 3 cut(s) 285, 493, 640
AluI AGCT 3 cut(s) 285, 493, 640
Alw21I GWGCWC 1 cut(s) 515
Alw26I GTCTC 1 cut(s) 663
AoxI GGCC 3 cut(s) 120, 316, 710
ApeKI GCWGC 3 cut(s) 299, 745, 748
ApoI RAATTY 4 cut(s) 17, 196, 209, 693
Asp700I GAANNNNTTC 1 cut(s) 633
AspLEI GCGC 1 cut(s) 576
AsuHPI GGTGA 1 cut(s) 343
BalI TGGCCA 1 cut(s) 318
BbsI GAAGAC 1 cut(s) 636
Bbv12I GWGCWC 1 cut(s) 515
BbvCI CCTCAGC 1 cut(s) 163
BbvI GCAGC 3 cut(s) 286, 732, 735
BccI CCATC 1 cut(s) 308
BceAI ACGGC 2 cut(s) 374, 697
BcoDI GTCTC 1 cut(s) 663
BfaI CTAG 3 cut(s) 44, 522, 654
BfrI CTTAAG 1 cut(s) 569
BisI GCNGC 3 cut(s) 300, 746, 749
BlsI GCNGC 3 cut(s) 301, 747, 750
BmrI ACTGGG 1 cut(s) 463
BmsI GCATC 2 cut(s) 718, 748
BmuI ACTGGG 1 cut(s) 463
BpiI GAAGAC 1 cut(s) 636
Bpu10I CCTNAGC 2 cut(s) 163, 509
BsaBI GATNNNNATC 1 cut(s) 342
BsaI GGTCTC 1 cut(s) 663
BsaJI CCNNGG 1 cut(s) 309
Bse1I ACTGG 1 cut(s) 458
Bse8I GATNNNNATC 1 cut(s) 342
BseDI CCNNGG 1 cut(s) 309
BseGI GGATG 5 cut(s) 319, 402, 463, 556, 733
BseJI GATNNNNATC 1 cut(s) 342
BseMII CTCAG 3 cut(s) 177, 500, 546
BseNI ACTGG 1 cut(s) 458
BseXI GCAGC 3 cut(s) 286, 732, 735
Bsh1236I CGCG 1 cut(s) 576
BshFI GGCC 3 cut(s) 122, 318, 712
BsiHKAI GWGCWC 1 cut(s) 515
BsmAI GTCTC 1 cut(s) 663
BsmI GAATGC 2 cut(s) 13, 751
BsnI GGCC 3 cut(s) 122, 318, 712
Bso31I GGTCTC 1 cut(s) 663
Bsp1286I GDGCHC 1 cut(s) 515
Bsp143I GATC 2 cut(s) 337, 379
Bsp19I CCATGG 1 cut(s) 309
BspACI CCGC 1 cut(s) 576
BspANI GGCC 3 cut(s) 122, 318, 712
BspCNI CTCAG 3 cut(s) 176, 501, 545
BspFNI CGCG 1 cut(s) 576
BspTI CTTAAG 1 cut(s) 569
BspTNI GGTCTC 1 cut(s) 663
BsrI ACTGG 1 cut(s) 458
BssECI CCNNGG 1 cut(s) 309
BssMI GATC 2 cut(s) 337, 379
BssNAI GTATAC 1 cut(s) 233
BssT1I CCWWGG 1 cut(s) 309
Bst1107I GTATAC 1 cut(s) 233
Bst4CI ACNGT 1 cut(s) 158
Bst6I CTCTTC 2 cut(s) 64, 207
BstAFI CTTAAG 1 cut(s) 569
BstAPI GCANNNNNTGC 2 cut(s) 482, 745
BstDEI CTNAG 4 cut(s) 163, 236, 509, 532
BstDSI CCRYGG 1 cut(s) 309
BstF5I GGATG 5 cut(s) 319, 402, 463, 556, 733
BstFNI CGCG 1 cut(s) 576
BstHHI GCGC 1 cut(s) 576
BstKTI GATC 2 cut(s) 340, 382
BstMAI GTCTC 1 cut(s) 663
BstMBI GATC 2 cut(s) 337, 379
BstMWI GCNNNNNNNGC 3 cut(s) 305, 482, 745
BstNSI RCATGY 1 cut(s) 389
BstUI CGCG 1 cut(s) 576
BstV1I GCAGC 3 cut(s) 286, 732, 735
BstV2I GAAGAC 1 cut(s) 636
BstZ17I GTATAC 1 cut(s) 233
BsuRI GGCC 3 cut(s) 122, 318, 712
BtgI CCRYGG 1 cut(s) 309
BtsCI GGATG 5 cut(s) 319, 402, 463, 556, 733
CfoI GCGC 1 cut(s) 576
Csp6I GTAC 2 cut(s) 607, 679
CviAII CATG 3 cut(s) 310, 320, 386
CviJI RGCY 9 cut(s) 122, 285, 318, 493, 520, 640, 653, 712, 745
CviKI_1 RGCY 9 cut(s) 122, 285, 318, 493, 520, 640, 653, 712, 745
CviQI GTAC 2 cut(s) 607, 679
DdeI CTNAG 4 cut(s) 163, 236, 509, 532
DpnI GATC 2 cut(s) 339, 381
DpnII GATC 2 cut(s) 337, 379
EaeI YGGCCR 2 cut(s) 316, 710
Eam1104I CTCTTC 2 cut(s) 64, 207
EarI CTCTTC 2 cut(s) 64, 207
Eco130I CCWWGG 1 cut(s) 309
Eco147I AGGCCT 1 cut(s) 122
Eco31I GGTCTC 1 cut(s) 663
Eco57I CTGAAG 2 cut(s) 188, 348
EcoRI GAATTC 1 cut(s) 693
EcoT14I CCWWGG 1 cut(s) 309
ErhI CCWWGG 1 cut(s) 309
FaeI CATG 3 cut(s) 313, 323, 389
FatI CATG 3 cut(s) 309, 319, 385
FauNDI CATATG 1 cut(s) 304
FblI GTMKAC 1 cut(s) 232
Fnu4HI GCNGC 3 cut(s) 300, 746, 749
FokI GGATG 5 cut(s) 326, 409, 470, 563, 740
Fsp4HI GCNGC 3 cut(s) 300, 746, 749
FspBI CTAG 3 cut(s) 44, 522, 654
GlaI GCGC 1 cut(s) 575
GluI GCNGC 3 cut(s) 300, 746, 749
HaeIII GGCC 3 cut(s) 122, 318, 712
HhaI GCGC 1 cut(s) 576
Hin1II CATG 3 cut(s) 313, 323, 389
Hin6I GCGC 1 cut(s) 574
HinP1I GCGC 1 cut(s) 574
HinfI GANTC 1 cut(s) 461
HphI GGTGA 1 cut(s) 343
Hpy166II GTNNAC 2 cut(s) 233, 681
Hpy188I TCNGA 2 cut(s) 207, 367
Hpy188III TCNNGA 4 cut(s) 222, 347, 394, 508
Hpy8I GTNNAC 2 cut(s) 233, 681
HpyAV CCTTC 1 cut(s) 112
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4V TGCA 7 cut(s) 11, 190, 302, 476, 485, 731, 751
HpyF10VI GCNNNNNNNGC 3 cut(s) 305, 482, 745
HpyF3I CTNAG 4 cut(s) 163, 236, 509, 532
Hsp92II CATG 3 cut(s) 313, 323, 389
HspAI GCGC 1 cut(s) 574
Kzo9I GATC 2 cut(s) 337, 379
Lsp1109I GCAGC 3 cut(s) 286, 732, 735
LweI GCATC 2 cut(s) 718, 748
MaeI CTAG 3 cut(s) 44, 522, 654
MaeIII GTNAC 2 cut(s) 436, 466
MalI GATC 2 cut(s) 339, 381
MboI GATC 2 cut(s) 337, 379
MboII GAAGA 5 cut(s) 51, 194, 389, 424, 641
MhlI GDGCHC 1 cut(s) 515
MlsI TGGCCA 1 cut(s) 318
MluCI AATT 6 cut(s) 17, 89, 196, 209, 495, 693
MluNI TGGCCA 1 cut(s) 318
MmeI TCCRAC 1 cut(s) 670
MnlI CCTC 8 cut(s) 78, 79, 172, 218, 367, 399, 515, 594
Mox20I TGGCCA 1 cut(s) 318
MroXI GAANNNNTTC 1 cut(s) 633
MscI TGGCCA 1 cut(s) 318
MseI TTAA 3 cut(s) 128, 342, 570
Msp20I TGGCCA 1 cut(s) 318
MspCI CTTAAG 1 cut(s) 569
Mva1269I GAATGC 2 cut(s) 13, 751
MvnI CGCG 1 cut(s) 576
MwoI GCNNNNNNNGC 3 cut(s) 305, 482, 745
NcoI CCATGG 1 cut(s) 309
NdeI CATATG 1 cut(s) 304
NdeII GATC 2 cut(s) 337, 379
NlaIII CATG 3 cut(s) 313, 323, 389
NmeAIII GCCGAG 1 cut(s) 127
NmuCI GTSAC 1 cut(s) 436
NspI RCATGY 1 cut(s) 389
PceI AGGCCT 1 cut(s) 122
PctI GAATGC 2 cut(s) 13, 751
PdmI GAANNNNTTC 1 cut(s) 633
PfeI GAWTC 1 cut(s) 461
PkrI GCNGC 3 cut(s) 301, 747, 750
RsaI GTAC 2 cut(s) 608, 680
RsaNI GTAC 2 cut(s) 607, 679
SaqAI TTAA 3 cut(s) 128, 342, 570
SatI GCNGC 3 cut(s) 300, 746, 749
Sau3AI GATC 2 cut(s) 337, 379
SduI GDGCHC 1 cut(s) 515
SetI ASST 7 cut(s) 115, 145, 287, 495, 586, 621, 642
SfaNI GCATC 2 cut(s) 718, 748
SmlI CTYRAG 1 cut(s) 569
SmoI CTYRAG 1 cut(s) 569
Sse9I AATT 6 cut(s) 17, 89, 196, 209, 495, 693
SseBI AGGCCT 1 cut(s) 122
SsiI CCGC 1 cut(s) 576
SspMI CTAG 3 cut(s) 44, 522, 654
StuI AGGCCT 1 cut(s) 122
StyI CCWWGG 1 cut(s) 309
TaaI ACNGT 1 cut(s) 158
TaqI TCGA 3 cut(s) 34, 83, 565
TasI AATT 6 cut(s) 17, 89, 196, 209, 495, 693
TatI WGTACW 1 cut(s) 678
TfiI GAWTC 1 cut(s) 461
Tru1I TTAA 3 cut(s) 128, 342, 570
Tru9I TTAA 3 cut(s) 128, 342, 570
TseFI GTSAC 1 cut(s) 436
TseI GCWGC 3 cut(s) 299, 745, 748
Tsp45I GTSAC 1 cut(s) 436
TspDTI ATGAA 2 cut(s) 18, 168
Vha464I CTTAAG 1 cut(s) 569
XapI RAATTY 4 cut(s) 17, 196, 209, 693
XceI RCATGY 1 cut(s) 389
XmiI GTMKAC 1 cut(s) 232
XmnI GAANNNNTTC 1 cut(s) 633
XspI CTAG 3 cut(s) 44, 522, 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.