MD17G1124500.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
10816124 .. 10817619
1496 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1124500.v1.1.491

Sequence Viewer

Length: 180 bp
ATGTCAGATGGTCCTTCCAGTTTTCCAGATGATCTCAACTGGCGTATCAGGATAGGTTTAAGGACCGGGAATCTTCAGGTGTTGAGATTGTGCCGGTATTATCACAACCCCATGGCTGTTGGACGGGACAAAGTGGTTATATGTGCAGGCTGGTTTTTCCAGAGCCAAGCAAATTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

60

Amino Acids

6.78

Weight (kDa)

9.38

Isoelectric Point (pI)

47.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024448)

Species Orthologous Gene IDs
malus_domestica MD17G1124500.v1.1
pyrus_communis pycom03g00630 pycom04g08810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 178
AcsI RAATTY 1 cut(s) 172
AcuI CTGAAG 1 cut(s) 59
ApoI RAATTY 1 cut(s) 172
AspS9I GGNCC 2 cut(s) 11, 63
AsuC2I CCSGG 1 cut(s) 67
AvaII GGWCC 2 cut(s) 11, 63
BaeI ACNNNNGTAYC 2 cut(s) 28, 61
BccI CCATC 1 cut(s) 2
BcnI CCSGG 1 cut(s) 67
Bme1390I CCNGG 1 cut(s) 67
Bme18I GGWCC 2 cut(s) 11, 63
BmgT120I GGNCC 2 cut(s) 11, 63
BmrFI CCNGG 1 cut(s) 67
BpuMI CCSGG 1 cut(s) 67
BsaJI CCNNGG 1 cut(s) 111
Bse118I RCCGGY 1 cut(s) 93
Bse1I ACTGG 2 cut(s) 18, 44
BseDI CCNNGG 1 cut(s) 111
BseNI ACTGG 2 cut(s) 18, 44
BsgI GTGCAG 1 cut(s) 165
BsiSI CCGG 2 cut(s) 66, 94
BslFI GGGAC 1 cut(s) 140
BsmFI GGGAC 1 cut(s) 140
Bsp143I GATC 1 cut(s) 31
Bsp19I CCATGG 1 cut(s) 111
BsrFI RCCGGY 1 cut(s) 93
BsrI ACTGG 2 cut(s) 18, 44
BssAI RCCGGY 1 cut(s) 93
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 1 cut(s) 31
BssT1I CCWWGG 1 cut(s) 111
BstC8I GCNNGC 1 cut(s) 148
BstDSI CCRYGG 1 cut(s) 111
BstKTI GATC 1 cut(s) 34
BstMBI GATC 1 cut(s) 31
BstSCI CCNGG 1 cut(s) 65
BtgI CCRYGG 1 cut(s) 111
Cac8I GCNNGC 1 cut(s) 148
Cfr10I RCCGGY 1 cut(s) 93
Cfr13I GGNCC 2 cut(s) 11, 63
CviAII CATG 1 cut(s) 112
CviJI RGCY 3 cut(s) 116, 150, 165
CviKI_1 RGCY 3 cut(s) 116, 150, 165
DpnI GATC 1 cut(s) 33
DpnII GATC 1 cut(s) 31
Eco130I CCWWGG 1 cut(s) 111
Eco47I GGWCC 2 cut(s) 11, 63
Eco57I CTGAAG 1 cut(s) 59
EcoT14I CCWWGG 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 111
FaeI CATG 1 cut(s) 115
FaiI YATR 4 cut(s) 113, 140, 142, 178
FaqI GGGAC 1 cut(s) 140
FatI CATG 1 cut(s) 111
HapII CCGG 2 cut(s) 66, 94
Hin1II CATG 1 cut(s) 115
HinfI GANTC 1 cut(s) 70
HpaII CCGG 2 cut(s) 66, 94
Hpy188I TCNGA 1 cut(s) 7
Hpy188III TCNNGA 3 cut(s) 26, 49, 160
HpyAV CCTTC 1 cut(s) 24
HpyCH4V TGCA 1 cut(s) 146
Hsp92II CATG 1 cut(s) 115
Kzo9I GATC 1 cut(s) 31
MalI GATC 1 cut(s) 33
MboI GATC 1 cut(s) 31
MboII GAAGA 1 cut(s) 65
MluCI AATT 1 cut(s) 172
MmeI TCCRAC 1 cut(s) 100
MseI TTAA 1 cut(s) 59
MspI CCGG 2 cut(s) 66, 94
MspR9I CCNGG 1 cut(s) 67
NciI CCSGG 1 cut(s) 67
NcoI CCATGG 1 cut(s) 111
NdeII GATC 1 cut(s) 31
NlaIII CATG 1 cut(s) 115
PfeI GAWTC 1 cut(s) 70
PsiI TTATAA 1 cut(s) 178
PspPI GGNCC 2 cut(s) 11, 63
SaqAI TTAA 1 cut(s) 59
Sau3AI GATC 1 cut(s) 31
Sau96I GGNCC 2 cut(s) 11, 63
ScrFI CCNGG 1 cut(s) 67
SetI ASST 2 cut(s) 58, 81
SinI GGWCC 2 cut(s) 11, 63
Sse9I AATT 1 cut(s) 172
StyD4I CCNGG 1 cut(s) 65
StyI CCWWGG 1 cut(s) 111
TasI AATT 1 cut(s) 172
TfiI GAWTC 1 cut(s) 70
Tru1I TTAA 1 cut(s) 59
Tru9I TTAA 1 cut(s) 59
VpaK11BI GGWCC 2 cut(s) 11, 63
XapI RAATTY 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.