MD17G1133100.v1.1

ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0024437
Physical Location & Seq
Forward (+)
11877590 .. 11883489
5900 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1133100.v1.1.491

Sequence Viewer

Length: 291 bp
ATGAAATCCAAGATTAAGGCGGAACAGCGGTGTATCTCCGTTAACAAAGTTAGAAAGAAGAACAGTGATGTACCAAGTGTCACTCGCTTGACATTTTCCGAAGGCACAAAAGAGGTATTAAGTGACTTGTTCGTACGTTACCCACCCCGTGCTCAAGTGGAGGACTTAGAAGTGTCTGGGAAAAGTAGTGATAAGAATGAGAGTGCCCAGATGGAAGAGGGACACAACGTTTCGCAAGCCTTCGATGAACAAGGAAGAAATTGCAAAGAAAGTGGCATCACTTGCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0006139 GO:0006259 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0007292 GO:0007346 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0009994 GO:0010033 GO:0010467 GO:0012505 GO:0016043 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019899 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0032392 GO:0032501 GO:0032502 GO:0032504 GO:0032508 GO:0032991 GO:0034097 GO:0034458 GO:0034612 GO:0034641 GO:0035770 GO:0035821 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043900 GO:0043902 GO:0043903 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044788 GO:0044794 GO:0044827 GO:0044829 GO:0045069 GO:0045070 GO:0045786 GO:0045787 GO:0045930 GO:0046483 GO:0048232 GO:0048468 GO:0048477 GO:0048515 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048524 GO:0048599 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050792 GO:0050794 GO:0050896 GO:0051276 GO:0051445 GO:0051446 GO:0051702 GO:0051704 GO:0051726 GO:0051728 GO:0051729 GO:0051817 GO:0051851 GO:0060184 GO:0065007 GO:0070035 GO:0070063 GO:0070555 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:0140098 GO:1901360 GO:1901363 GO:1903900 GO:1903902 GO:1990247 GO:1990904 GO:2000241 GO:2000243
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DEAD HA2 Helicase_C OB_NTP_bind R3H

Protein Analysis

97

Amino Acids

10.77

Weight (kDa)

7.69

Isoelectric Point (pI)

35.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024437)

Species Orthologous Gene IDs
malus_domestica MD17G1133100.v1.1
pyrus_communis pycom17g12720 pycom17g12760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 20, 28
AclI AACGTT 1 cut(s) 228
AdeI CACNNNGTG 1 cut(s) 149
AfaI GTAC 2 cut(s) 72, 135
Alw21I GWGCWC 1 cut(s) 154
BaeGI GKGCMC 1 cut(s) 208
Bbv12I GWGCWC 1 cut(s) 154
BccI CCATC 1 cut(s) 205
BmsI GCATC 1 cut(s) 285
BpuEI CTTGAG 1 cut(s) 138
BseSI GKGCMC 1 cut(s) 208
BsiHKAI GWGCWC 1 cut(s) 154
BsiWI CGTACG 1 cut(s) 133
BslFI GGGAC 1 cut(s) 234
BsmFI GGGAC 1 cut(s) 234
Bsp1286I GDGCHC 2 cut(s) 154, 208
BspACI CCGC 2 cut(s) 20, 28
Bst4CI ACNGT 1 cut(s) 65
Bst6I CTCTTC 1 cut(s) 210
BstAPI GCANNNNNTGC 1 cut(s) 282
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 1 cut(s) 166
BstMWI GCNNNNNNNGC 1 cut(s) 282
BstSLI GKGCMC 1 cut(s) 208
BtsIMutI CAGTG 1 cut(s) 70
Cac8I GCNNGC 1 cut(s) 237
Csp6I GTAC 2 cut(s) 71, 134
CspCI CAANNNNNGTGG 2 cut(s) 253, 288
CviJI RGCY 1 cut(s) 239
CviKI_1 RGCY 1 cut(s) 239
CviQI GTAC 2 cut(s) 71, 134
DdeI CTNAG 1 cut(s) 166
DraIII CACNNNGTG 1 cut(s) 149
Eam1104I CTCTTC 1 cut(s) 210
EarI CTCTTC 1 cut(s) 210
EciI GGCGGA 1 cut(s) 35
FaqI GGGAC 1 cut(s) 234
HincII GTYRAC 1 cut(s) 43
HindII GTYRAC 1 cut(s) 43
HpaI GTTAAC 1 cut(s) 43
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 1 cut(s) 100
Hpy8I GTNNAC 1 cut(s) 43
HpyAV CCTTC 2 cut(s) 95, 250
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4IV ACGT 2 cut(s) 136, 228
HpyCH4V TGCA 1 cut(s) 264
HpyF10VI GCNNNNNNNGC 1 cut(s) 282
HpyF3I CTNAG 1 cut(s) 166
HpySE526I ACGT 2 cut(s) 136, 228
KspAI GTTAAC 1 cut(s) 43
LpnPI CCDG 2 cut(s) 162, 221
LweI GCATC 1 cut(s) 285
MaeII ACGT 2 cut(s) 136, 228
MaeIII GTNAC 3 cut(s) 79, 122, 137
MboII GAAGA 3 cut(s) 70, 227, 267
MhlI GDGCHC 2 cut(s) 154, 208
MluCI AATT 1 cut(s) 259
MnlI CCTC 3 cut(s) 106, 154, 211
MseI TTAA 3 cut(s) 15, 42, 119
MspA1I CMGCKG 1 cut(s) 28
MwoI GCNNNNNNNGC 1 cut(s) 282
NmuCI GTSAC 2 cut(s) 79, 122
Pfl23II CGTACG 1 cut(s) 133
Psp1406I AACGTT 1 cut(s) 228
PspLI CGTACG 1 cut(s) 133
RsaI GTAC 2 cut(s) 72, 135
RsaNI GTAC 2 cut(s) 71, 134
SaqAI TTAA 3 cut(s) 15, 42, 119
SduI GDGCHC 2 cut(s) 154, 208
SetI ASST 3 cut(s) 117, 139, 231
SfaNI GCATC 1 cut(s) 285
SmlI CTYRAG 1 cut(s) 153
SmoI CTYRAG 1 cut(s) 153
Sse9I AATT 1 cut(s) 259
SsiI CCGC 2 cut(s) 20, 28
TaaI ACNGT 1 cut(s) 65
TaiI ACGT 2 cut(s) 139, 231
TaqI TCGA 1 cut(s) 243
TasI AATT 1 cut(s) 259
Tru1I TTAA 3 cut(s) 15, 42, 119
Tru9I TTAA 3 cut(s) 15, 42, 119
TscAI CASTG 1 cut(s) 70
TseFI GTSAC 2 cut(s) 79, 122
Tsp45I GTSAC 2 cut(s) 79, 122
TspDTI ATGAA 2 cut(s) 17, 261
TspGWI ACGGA 1 cut(s) 28
TspRI CASTG 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.