pycom17g12720

ATP-dependent RNA helicase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
10440813 .. 10441918
1106 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g12720.2

Sequence Viewer

Length: 366 bp
ATGAAATCCAAGATTGAGGGAAAGGGGAACAGCAGTGTATCATGTGGAGGACACCCTGTGCTCATGTGTACAAAAGAAGTATTAAGTGACTTGTTCGTACGTTACCCACCCTGTGCTCATGCGGAGGAGTTAGAAGTGTCTGGGAAAAGTAGTGATAAGAATGAGAGCGCCCAGATGGAAGTGGGACACAAAGTTTCGCAAGCCCTTGATGAACAAGTAATTCTTGTATCTGGTGAGACTGGGTGCGGAAAGACAACACAGGTTACGATTTCTTTGCTTTGTGTTCTTTATGGTATATTTATCACAATGTGTCCTGAACCTTTGTTTCAAAGGAATTTCATTTCATATCTTTTTCTTTCTATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003678 GO:0003723 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0006139 GO:0006259 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007276 GO:0007281 GO:0007283 GO:0007286 GO:0007292 GO:0007346 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0009994 GO:0010033 GO:0010467 GO:0012505 GO:0016043 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019899 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0032392 GO:0032501 GO:0032502 GO:0032504 GO:0032508 GO:0032991 GO:0034097 GO:0034458 GO:0034612 GO:0034641 GO:0035770 GO:0035821 GO:0042221 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043900 GO:0043902 GO:0043903 GO:0044237 GO:0044238 GO:0044260 GO:0044403 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0044788 GO:0044794 GO:0044827 GO:0044829 GO:0045069 GO:0045070 GO:0045786 GO:0045787 GO:0045930 GO:0046483 GO:0048232 GO:0048468 GO:0048477 GO:0048515 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048524 GO:0048599 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050792 GO:0050794 GO:0050896 GO:0051276 GO:0051445 GO:0051446 GO:0051702 GO:0051704 GO:0051726 GO:0051728 GO:0051729 GO:0051817 GO:0051851 GO:0060184 GO:0065007 GO:0070035 GO:0070063 GO:0070555 GO:0071103 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0140097 GO:0140098 GO:1901360 GO:1901363 GO:1903900 GO:1903902 GO:1990247 GO:1990904 GO:2000241 GO:2000243
KEGG Pathways
Metabolic & Signaling

Protein Analysis

122

Amino Acids

13.16

Weight (kDa)

5.55

Isoelectric Point (pI)

28.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024437)

Species Orthologous Gene IDs
malus_domestica MD17G1133100.v1.1
pyrus_communis pycom17g12720 pycom17g12760

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 122, 246
AcsI RAATTY 1 cut(s) 334
AdeI CACNNNGTG 3 cut(s) 58, 113, 309
AfaI GTAC 2 cut(s) 70, 99
AgsI TTSAA 1 cut(s) 329
Alw21I GWGCWC 2 cut(s) 63, 118
Alw26I GTCTC 1 cut(s) 230
ApoI RAATTY 1 cut(s) 334
AspLEI GCGC 1 cut(s) 170
AsuHPI GGTGA 1 cut(s) 245
Bbv12I GWGCWC 2 cut(s) 63, 118
BccI CCATC 1 cut(s) 169
BcgI CGANNNNNNTGC 2 cut(s) 256, 290
BcoDI GTCTC 1 cut(s) 230
BfoI RGCGCY 1 cut(s) 171
BmrI ACTGGG 1 cut(s) 249
BmuI ACTGGG 1 cut(s) 249
Bse1I ACTGG 1 cut(s) 244
BseNI ACTGG 1 cut(s) 244
BseRI GAGGAG 1 cut(s) 140
BsiHKAI GWGCWC 2 cut(s) 63, 118
BsiWI CGTACG 1 cut(s) 97
BslFI GGGAC 1 cut(s) 198
BsmAI GTCTC 1 cut(s) 230
BsmFI GGGAC 1 cut(s) 198
Bsp1286I GDGCHC 2 cut(s) 63, 118
Bsp1407I TGTACA 1 cut(s) 68
BspACI CCGC 2 cut(s) 122, 246
BsrGI TGTACA 1 cut(s) 68
BsrI ACTGG 1 cut(s) 244
BstAUI TGTACA 1 cut(s) 68
BstC8I GCNNGC 1 cut(s) 201
BstH2I RGCGCY 1 cut(s) 171
BstHHI GCGC 1 cut(s) 170
BstMAI GTCTC 1 cut(s) 230
BtsI GCAGTG 1 cut(s) 40
BtsIMutI CAGTG 1 cut(s) 40
Cac8I GCNNGC 1 cut(s) 201
CfoI GCGC 1 cut(s) 170
Csp6I GTAC 2 cut(s) 69, 98
CviAII CATG 3 cut(s) 42, 64, 119
CviJI RGCY 1 cut(s) 203
CviKI_1 RGCY 1 cut(s) 203
CviQI GTAC 2 cut(s) 69, 98
DraIII CACNNNGTG 3 cut(s) 58, 113, 309
FaeI CATG 3 cut(s) 45, 67, 122
FaiI YATR 6 cut(s) 43, 65, 120, 291, 296, 346
FalI AAGNNNNNCTT 2 cut(s) 207, 239
FaqI GGGAC 1 cut(s) 198
FatI CATG 3 cut(s) 41, 63, 118
GlaI GCGC 1 cut(s) 169
HaeII RGCGCY 1 cut(s) 171
HhaI GCGC 1 cut(s) 170
Hin1II CATG 3 cut(s) 45, 67, 122
Hin6I GCGC 1 cut(s) 168
HinP1I GCGC 1 cut(s) 168
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 1 cut(s) 69
Hpy188III TCNNGA 1 cut(s) 314
Hpy8I GTNNAC 1 cut(s) 69
HpyCH4IV ACGT 1 cut(s) 100
HpySE526I ACGT 1 cut(s) 100
Hsp92II CATG 3 cut(s) 45, 67, 122
HspAI GCGC 1 cut(s) 168
LpnPI CCDG 8 cut(s) 69, 124, 126, 185, 216, 225, 245, 327
MaeII ACGT 1 cut(s) 100
MaeIII GTNAC 3 cut(s) 86, 101, 262
MhlI GDGCHC 2 cut(s) 63, 118
MluCI AATT 2 cut(s) 219, 334
MnlI CCTC 3 cut(s) 10, 41, 118
MseI TTAA 1 cut(s) 83
NlaIII CATG 3 cut(s) 45, 67, 122
NmuCI GTSAC 1 cut(s) 86
Pfl23II CGTACG 1 cut(s) 97
PspLI CGTACG 1 cut(s) 97
RsaI GTAC 2 cut(s) 70, 99
RsaNI GTAC 2 cut(s) 69, 98
SaqAI TTAA 1 cut(s) 83
SduI GDGCHC 2 cut(s) 63, 118
SetI ASST 3 cut(s) 103, 264, 322
Sse9I AATT 2 cut(s) 219, 334
SsiI CCGC 2 cut(s) 122, 246
TaiI ACGT 1 cut(s) 103
TasI AATT 2 cut(s) 219, 334
TatI WGTACW 1 cut(s) 68
Tru1I TTAA 1 cut(s) 83
Tru9I TTAA 1 cut(s) 83
TscAI CASTG 1 cut(s) 40
TseFI GTSAC 1 cut(s) 86
Tsp45I GTSAC 1 cut(s) 86
TspDTI ATGAA 4 cut(s) 17, 225, 328, 333
TspRI CASTG 1 cut(s) 40
XapI RAATTY 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.