Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0019779

Physical Location & Seq

Genomic Coordinates Reverse (-)

13858955 .. 13859287

Gene Structure 333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1150500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGCAGTCTCTGACTCTCTGTCTCTCAGAAGAAGAGAAGTGGAAAAAGTATGACAATTTTAGCAGATTGAGAGAGGAGGGCTCTTGGCCTTCAGAATTCTTGGTTCATCAGTCATCGTCTTCCATTTTCATCAAAGCAGCAGAGCTCTCAGATCTCACTGCGATGAGCAGCAAATCAAGCTCCGTCGCCACATCCTCATTAAAGCCGACGACTTGGGTCCTACCCTATAAGACCCAGAACCTCACCGACCTCTACTCTCTGGGGAGAGTCCTTGGCAAGGGCCAGTTCGGCACCACCTACCTCTGCACCGAAATCTCCTCCGGACACCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004683 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009931 GO:0009987 GO:0010033 GO:0010857 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0032870 GO:0033993 GO:0035556 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0071704 GO:0097305 GO:0097306 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04626 ko05145 map04626 map05145

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_6 Pkinase

Protein Analysis

111

Amino Acids

12.26

Weight (kDa)

6.72

Isoelectric Point (pI)

55.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019779)

Species	Orthologous Gene IDs
malus_domestica	MD17G1150500.v1.1
prunus_persica	Prupe.4G233300_v2.0.a1 Prupe.4G233300_v2.0.a1 Prupe.4G233300_v2.0.a1 Prupe.4G233300_v2.0.a1 Prupe.4G233300_v2.0.a1 Prupe.4G233300_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	290
AccIII	TCCGGA	1 cut(s)	320
AcsI	RAATTY	1 cut(s)	95
AcuI	CTGAAG	1 cut(s)	75
AfiI	CCNNNNNNNGG	1 cut(s)	277
AhdI	GACNNNNNGTC	1 cut(s)	18
AluBI	AGCT	2 cut(s)	145, 180
AluI	AGCT	2 cut(s)	145, 180
Alw21I	GWGCWC	1 cut(s)	147
Alw26I	GTCTC	2 cut(s)	12, 26
AlwNI	CAGNNNCTG	1 cut(s)	10
Aor13HI	TCCGGA	1 cut(s)	320
AoxI	GGCC	2 cut(s)	86, 280
ApeKI	GCWGC	2 cut(s)	137, 168
ApoI	RAATTY	1 cut(s)	95
AspS9I	GGNCC	2 cut(s)	217, 280
AsuHPI	GGTGA	1 cut(s)	235
AvaII	GGWCC	1 cut(s)	217
BanI	GGYRCC	1 cut(s)	290
BanII	GRGCYC	2 cut(s)	83, 147
BbsI	GAAGAC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	147
BbvI	GCAGC	2 cut(s)	149, 180
BcoDI	GTCTC	2 cut(s)	12, 26
BglI	GCCNNNNNGGC	1 cut(s)	288
BglII	AGATCT	1 cut(s)	151
BisI	GCNGC	2 cut(s)	138, 169
BlsI	GCNGC	2 cut(s)	139, 170
Bme18I	GGWCC	1 cut(s)	217
BmeRI	GACNNNNNGTC	1 cut(s)	18
BmgT120I	GGNCC	2 cut(s)	217, 280
BmiI	GGNNCC	2 cut(s)	218, 292
BoxI	GACNNNNGTC	1 cut(s)	215
BpiI	GAAGAC	1 cut(s)	111
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
BsaJI	CCNNGG	1 cut(s)	271
BsaWI	WCCGGW	1 cut(s)	320
Bsc4I	CCNNNNNNNGG	1 cut(s)	277
Bse1I	ACTGG	1 cut(s)	283
BseAI	TCCGGA	1 cut(s)	320
BseDI	CCNNGG	1 cut(s)	271
BseGI	GGATG	1 cut(s)	191
BseLI	CCNNNNNNNGG	1 cut(s)	277
BseMII	CTCAG	2 cut(s)	39, 162
BseNI	ACTGG	1 cut(s)	283
BseRI	GAGGAG	2 cut(s)	89, 307
BseXI	GCAGC	2 cut(s)	149, 180
BsgI	GTGCAG	1 cut(s)	289
BshFI	GGCC	2 cut(s)	88, 282
BshNI	GGYRCC	1 cut(s)	290
BsiHKAI	GWGCWC	1 cut(s)	147
BsiSI	CCGG	1 cut(s)	321
BslI	CCNNNNNNNGG	1 cut(s)	277
BsmAI	GTCTC	2 cut(s)	12, 26
BsnI	GGCC	2 cut(s)	88, 282
Bsp1286I	GDGCHC	2 cut(s)	83, 147
Bsp13I	TCCGGA	1 cut(s)	320
Bsp143I	GATC	1 cut(s)	151
BspANI	GGCC	2 cut(s)	88, 282
BspCNI	CTCAG	2 cut(s)	38, 161
BspEI	TCCGGA	1 cut(s)	320
BspLI	GGNNCC	2 cut(s)	218, 292
BspT107I	GGYRCC	1 cut(s)	290
BsrI	ACTGG	1 cut(s)	283
BssECI	CCNNGG	1 cut(s)	271
BssMI	GATC	1 cut(s)	151
BssT1I	CCWWGG	1 cut(s)	271
Bst6I	CTCTTC	1 cut(s)	27
BstDEI	CTNAG	2 cut(s)	25, 148
BstENI	CCTNNNNNAGG	1 cut(s)	275
BstF5I	GGATG	1 cut(s)	191
BstKTI	GATC	1 cut(s)	154
BstMAI	GTCTC	2 cut(s)	12, 26
BstMBI	GATC	1 cut(s)	151
BstMWI	GCNNNNNNNGC	2 cut(s)	177, 288
BstPAI	GACNNNNGTC	1 cut(s)	215
BstV1I	GCAGC	2 cut(s)	149, 180
BstV2I	GAAGAC	1 cut(s)	111
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
BsuRI	GGCC	2 cut(s)	88, 282
BtgZI	GCGATG	1 cut(s)	176
BtsCI	GGATG	1 cut(s)	191
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	1 cut(s)	156
CaiI	CAGNNNCTG	1 cut(s)	10
Cfr13I	GGNCC	2 cut(s)	217, 280
CviJI	RGCY	6 cut(s)	81, 88, 145, 180, 205, 282
CviKI_1	RGCY	6 cut(s)	81, 88, 145, 180, 205, 282
DdeI	CTNAG	2 cut(s)	25, 148
DpnI	GATC	1 cut(s)	153
DpnII	GATC	1 cut(s)	151
DriI	GACNNNNNGTC	1 cut(s)	18
Eam1104I	CTCTTC	1 cut(s)	27
Eam1105I	GACNNNNNGTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	27
Ecl136II	GAGCTC	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	271
Eco24I	GRGCYC	2 cut(s)	83, 147
Eco47I	GGWCC	1 cut(s)	217
Eco53kI	GAGCTC	1 cut(s)	145
Eco57I	CTGAAG	1 cut(s)	75
EcoICRI	GAGCTC	1 cut(s)	145
EcoNI	CCTNNNNNAGG	1 cut(s)	275
EcoO109I	RGGNCCY	1 cut(s)	217
EcoRI	GAATTC	1 cut(s)	95
EcoT14I	CCWWGG	1 cut(s)	271
EcoT38I	GRGCYC	2 cut(s)	83, 147
ErhI	CCWWGG	1 cut(s)	271
FaiI	YATR	2 cut(s)	51, 228
Fnu4HI	GCNGC	2 cut(s)	138, 169
FokI	GGATG	1 cut(s)	178
FriOI	GRGCYC	2 cut(s)	83, 147
Fsp4HI	GCNGC	2 cut(s)	138, 169
GluI	GCNGC	2 cut(s)	138, 169
HaeIII	GGCC	2 cut(s)	88, 282
HapII	CCGG	1 cut(s)	321
HinfI	GANTC	2 cut(s)	13, 267
HpaII	CCGG	1 cut(s)	321
HphI	GGTGA	1 cut(s)	235
Hpy188I	TCNGA	4 cut(s)	12, 28, 94, 151
Hpy188III	TCNNGA	1 cut(s)	321
Hpy99I	CGWCG	2 cut(s)	188, 211
HpyAV	CCTTC	1 cut(s)	99
HpyCH4V	TGCA	2 cut(s)	4, 306
HpyF10VI	GCNNNNNNNGC	2 cut(s)	177, 288
HpyF3I	CTNAG	2 cut(s)	25, 148
Kpn2I	TCCGGA	1 cut(s)	320
Kzo9I	GATC	1 cut(s)	151
LmnI	GCTCC	1 cut(s)	185
LpnPI	CCDG	3 cut(s)	245, 248, 296
Lsp1109I	GCAGC	2 cut(s)	149, 180
MalI	GATC	1 cut(s)	153
MboI	GATC	1 cut(s)	151
MboII	GAAGA	3 cut(s)	41, 44, 111
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	2 cut(s)	83, 147
MluCI	AATT	2 cut(s)	55, 95
MlyI	GAGTC	2 cut(s)	7, 276
MnlI	CCTC	7 cut(s)	67, 70, 205, 251, 260, 311, 328
MroI	TCCGGA	1 cut(s)	320
MseI	TTAA	1 cut(s)	200
MslI	CAYNNNNRTG	1 cut(s)	161
MspI	CCGG	1 cut(s)	321
MwoI	GCNNNNNNNGC	2 cut(s)	177, 288
NdeII	GATC	1 cut(s)	151
NlaIV	GGNNCC	2 cut(s)	218, 292
PkrI	GCNGC	2 cut(s)	139, 170
PleI	GAGTC	2 cut(s)	7, 275
PpsI	GAGTC	2 cut(s)	7, 275
PpuMI	RGGWCCY	1 cut(s)	217
PshAI	GACNNNNGTC	1 cut(s)	215
Psp124BI	GAGCTC	1 cut(s)	147
Psp5II	RGGWCCY	1 cut(s)	217
PspN4I	GGNNCC	2 cut(s)	218, 292
PspPI	GGNCC	2 cut(s)	217, 280
PspPPI	RGGWCCY	1 cut(s)	217
PstNI	CAGNNNCTG	1 cut(s)	10
PsuI	RGATCY	1 cut(s)	151
RseI	CAYNNNNRTG	1 cut(s)	161
SacI	GAGCTC	1 cut(s)	147
SaqAI	TTAA	1 cut(s)	200
SatI	GCNGC	2 cut(s)	138, 169
Sau3AI	GATC	1 cut(s)	151
Sau96I	GGNCC	2 cut(s)	217, 280
SchI	GAGTC	2 cut(s)	7, 276
SduI	GDGCHC	2 cut(s)	83, 147
SetI	ASST	6 cut(s)	147, 182, 243, 252, 299, 303
SgeI	CNNG	9 cut(s)	96, 112, 189, 225, 247, 272, 284, 289, 295
SinI	GGWCC	1 cut(s)	217
SmiMI	CAYNNNNRTG	1 cut(s)	161
Sse9I	AATT	2 cut(s)	55, 95
SstI	GAGCTC	1 cut(s)	147
StyI	CCWWGG	1 cut(s)	271
TasI	AATT	2 cut(s)	55, 95
Tru1I	TTAA	1 cut(s)	200
Tru9I	TTAA	1 cut(s)	200
TscAI	CASTG	1 cut(s)	163
TseI	GCWGC	2 cut(s)	137, 168
TspDTI	ATGAA	2 cut(s)	95, 118
TspGWI	ACGGA	1 cut(s)	172
TspRI	CASTG	1 cut(s)	163
VpaK11BI	GGWCC	1 cut(s)	217
XagI	CCTNNNNNAGG	1 cut(s)	275
XapI	RAATTY	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.