MD17G1156600.v1.1

Belongs to the glycosyl hydrolase 5 (cellulase A) family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
15038593 .. 15038802
210 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1156600.v1.1.491

Sequence Viewer

Length: 210 bp
ATGAATGGAAAGCCGTTTTACATAAACGGGTTCAATGCATATTGGATGATGTACATGGCATCTGACCCATCTACAAGGGCCAAGGTCACTTGTGCACTCCAACAAGGCTCCAAGTATGGCATGAATGTTGCTAGGGTTTGGGCTTTCAGTGACGGCGGTTACGATAGACCCCTTCAGCCTTCTAATGGTTCATACAACGAGGACACGTAG

Protein Analysis

70

Amino Acids

7.76

Weight (kDa)

7.84

Isoelectric Point (pI)

42.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021197)

Species Orthologous Gene IDs
malus_domestica MD17G1156600.v1.1
pyrus_communis pycom09g08800 pycom17g15010
rosa_multiflora Rmu_sc0000435.1_g000044
rosa_samantha Rh5BG462600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 156
AcuI CTGAAG 1 cut(s) 158
AfaI GTAC 1 cut(s) 53
AfiI CCNNNNNNNGG 1 cut(s) 185
AflIII ACRYGT 1 cut(s) 204
AgsI TTSAA 1 cut(s) 34
Alw21I GWGCWC 1 cut(s) 97
Alw44I GTGCAC 1 cut(s) 93
AoxI GGCC 1 cut(s) 78
ApaLI GTGCAC 1 cut(s) 93
AspS9I GGNCC 1 cut(s) 78
BaeGI GKGCMC 1 cut(s) 97
Bbv12I GWGCWC 1 cut(s) 97
BccI CCATC 1 cut(s) 76
BceAI ACGGC 1 cut(s) 169
BfaI CTAG 1 cut(s) 132
BmgT120I GGNCC 1 cut(s) 78
BmiI GGNNCC 1 cut(s) 109
BmsI GCATC 1 cut(s) 68
BsaAI YACGTR 1 cut(s) 207
BsaJI CCNNGG 1 cut(s) 81
Bsc4I CCNNNNNNNGG 1 cut(s) 185
BseDI CCNNGG 1 cut(s) 81
BseGI GGATG 1 cut(s) 51
BseLI CCNNNNNNNGG 1 cut(s) 185
BseSI GKGCMC 1 cut(s) 97
BshFI GGCC 1 cut(s) 80
BsiHKAI GWGCWC 1 cut(s) 97
BslI CCNNNNNNNGG 1 cut(s) 185
BsnI GGCC 1 cut(s) 80
Bsp1286I GDGCHC 1 cut(s) 97
Bsp1407I TGTACA 1 cut(s) 51
BspACI CCGC 1 cut(s) 156
BspANI GGCC 1 cut(s) 80
BspLI GGNNCC 1 cut(s) 109
BsrGI TGTACA 1 cut(s) 51
BssECI CCNNGG 1 cut(s) 81
BssT1I CCWWGG 1 cut(s) 81
BstAUI TGTACA 1 cut(s) 51
BstBAI YACGTR 1 cut(s) 207
BstF5I GGATG 1 cut(s) 51
BstSLI GKGCMC 1 cut(s) 97
BsuRI GGCC 1 cut(s) 80
BtsCI GGATG 1 cut(s) 51
BtsIMutI CAGTG 1 cut(s) 154
Cfr13I GGNCC 1 cut(s) 78
Csp6I GTAC 1 cut(s) 52
CviAII CATG 2 cut(s) 55, 121
CviJI RGCY 5 cut(s) 13, 80, 108, 143, 178
CviKI_1 RGCY 5 cut(s) 13, 80, 108, 143, 178
CviQI GTAC 1 cut(s) 52
Eco130I CCWWGG 1 cut(s) 81
Eco57I CTGAAG 1 cut(s) 158
EcoT14I CCWWGG 1 cut(s) 81
EcoT22I ATGCAT 1 cut(s) 40
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 2 cut(s) 58, 124
FaiI YATR 6 cut(s) 23, 40, 56, 117, 122, 193
FatI CATG 2 cut(s) 54, 120
FokI GGATG 1 cut(s) 58
FspBI CTAG 1 cut(s) 132
HaeIII GGCC 1 cut(s) 80
Hin1II CATG 2 cut(s) 58, 124
Hpy166II GTNNAC 1 cut(s) 95
Hpy188I TCNGA 1 cut(s) 64
Hpy8I GTNNAC 1 cut(s) 95
HpyAV CCTTC 2 cut(s) 182, 189
HpyCH4IV ACGT 1 cut(s) 206
HpyCH4V TGCA 2 cut(s) 38, 95
HpySE526I ACGT 1 cut(s) 206
Hsp92II CATG 2 cut(s) 58, 124
LmnI GCTCC 1 cut(s) 113
LweI GCATC 1 cut(s) 68
MaeI CTAG 1 cut(s) 132
MaeII ACGT 1 cut(s) 206
MaeIII GTNAC 3 cut(s) 85, 149, 158
MhlI GDGCHC 1 cut(s) 97
MmeI TCCRAC 1 cut(s) 124
MnlI CCTC 1 cut(s) 193
Mph1103I ATGCAT 1 cut(s) 40
NlaIII CATG 2 cut(s) 58, 124
NlaIV GGNNCC 1 cut(s) 109
NmuCI GTSAC 2 cut(s) 85, 149
NsiI ATGCAT 1 cut(s) 40
PcsI WCGNNNNNNNCGW 1 cut(s) 159
Ppu21I YACGTR 1 cut(s) 207
PspN4I GGNNCC 1 cut(s) 109
PspPI GGNCC 1 cut(s) 78
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
Sau96I GGNCC 1 cut(s) 78
SduI GDGCHC 1 cut(s) 97
SetI ASST 2 cut(s) 87, 209
SfaNI GCATC 1 cut(s) 68
SgeI CNNG 9 cut(s) 40, 67, 87, 94, 102, 116, 124, 133, 144
SsiI CCGC 1 cut(s) 156
SspMI CTAG 1 cut(s) 132
StyI CCWWGG 1 cut(s) 81
TaiI ACGT 1 cut(s) 209
TatI WGTACW 1 cut(s) 51
TscAI CASTG 1 cut(s) 154
TseFI GTSAC 2 cut(s) 85, 149
Tsp45I GTSAC 2 cut(s) 85, 149
TspDTI ATGAA 3 cut(s) 17, 137, 180
TspRI CASTG 1 cut(s) 154
VneI GTGCAC 1 cut(s) 93
XspI CTAG 1 cut(s) 132
Zsp2I ATGCAT 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.