Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000435.1

Orthogroup ID

OG0021197

Physical Location & Seq

Genomic Coordinates Reverse (-)

206147 .. 208251

Gene Structure 2105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000435.1_g000044.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

atgctggtgcaccagaaatctgttgacttgtcccctccaggatacaacagcccaacaacaagttgtgtggctcacaccaatctgcacaaattggaggaacccaaagctccaccaaaagaacacctttctttggccaagaaacacacaagactcttttgggggattttggaaagaaagttgatggaaccgaaccgaaccgagtctttcggtgcggttcggtgcggttccttcgatttttcggctgactctagttttggcggaaccaacggaaccggatttgttatgaatgggaaaccattttacataaacggattcaatgcgtattggatgatgtacatggcatctgacccatctacacaggctaaggttacttctgcattccaacaggcctccaagtataagatgaatgttgctagaacttgggctttcagtgatggtgttgggaaagccctgcaaacatcgcctggttcgtataacgaagatatgttcaagaacaacgacaacaccatgtcctccaatgccccgccaccgccattgaatcactgcaatcccaagaaagggtcgaaacctcgccgctctactactgcagtcatggaacgactcaccaatcccatccctaaagccaaagccagaaacctctcacaagccagagactcccctttgctctcaaatgctttatctccagatcccgccaccgccaaaacaaggaggaggcagaaaaccacaaacccaaggacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0003674 GO:0003824 GO:0004553 GO:0004567 GO:0005975 GO:0005976 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010412 GO:0015923 GO:0016052 GO:0016787 GO:0016798 GO:0016985 GO:0016998 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0046355 GO:0071554 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

Cellulase

Protein Analysis

246

Amino Acids

27.17

Weight (kDa)

10.01

Isoelectric Point (pI)

43.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021197)

Species	Orthologous Gene IDs
malus_domestica	MD17G1156600.v1.1
pyrus_communis	pycom09g08800 pycom17g15010
rosa_multiflora	Rmu_sc0000435.1_g000044
rosa_samantha	Rh5BG462600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	576
AciI	CCGC	8 cut(s)	212, 222, 258, 524, 530, 574, 690, 696
AclWI	GGATC	1 cut(s)	680
AcoI	YGGCCR	1 cut(s)	132
AfaI	GTAC	1 cut(s)	335
AfiI	CCNNNNNNNGG	4 cut(s)	130, 557, 558, 705
AgsI	TTSAA	3 cut(s)	316, 490, 538
AjnI	CCWGG	2 cut(s)	37, 463
AluBI	AGCT	1 cut(s)	107
AluI	AGCT	1 cut(s)	107
Alw21I	GWGCWC	1 cut(s)	12
Alw26I	GTCTC	1 cut(s)	645
Alw44I	GTGCAC	1 cut(s)	8
AlwI	GGATC	1 cut(s)	680
AoxI	GGCC	2 cut(s)	132, 387
ApaLI	GTGCAC	1 cut(s)	8
ArsI	GACNNNNNNTTYG	2 cut(s)	236, 268
AsuHPI	GGTGA	1 cut(s)	595
BaeGI	GKGCMC	1 cut(s)	12
BalI	TGGCCA	1 cut(s)	134
Bbv12I	GWGCWC	1 cut(s)	12
BccI	CCATC	4 cut(s)	175, 358, 428, 620
BciT130I	CCWGG	2 cut(s)	39, 465
BciVI	GTATCC	1 cut(s)	35
BcoDI	GTCTC	1 cut(s)	645
BfaI	CTAG	2 cut(s)	249, 414
BfmI	CTRYAG	1 cut(s)	585
BfuI	GTATCC	1 cut(s)	35
BisI	GCNGC	1 cut(s)	574
BlsI	GCNGC	1 cut(s)	575
Bme1390I	CCNGG	2 cut(s)	39, 465
BmiI	GGNNCC	5 cut(s)	99, 186, 226, 262, 271
BmrFI	CCNGG	2 cut(s)	39, 465
BmsI	GCATC	1 cut(s)	350
BpmI	CTGGAG	2 cut(s)	21, 666
Bpu10I	CCTNAGC	1 cut(s)	363
BsaJI	CCNNGG	1 cut(s)	731
BsaWI	WCCGGW	1 cut(s)	272
Bsc4I	CCNNNNNNNGG	4 cut(s)	130, 557, 558, 705
BseBI	CCWGG	2 cut(s)	39, 465
BseDI	CCNNGG	1 cut(s)	731
BseGI	GGATG	2 cut(s)	333, 612
BseLI	CCNNNNNNNGG	4 cut(s)	130, 557, 558, 705
BseRI	GAGGAG	1 cut(s)	724
BseSI	GKGCMC	1 cut(s)	12
BsgI	GTGCAG	1 cut(s)	68
BshFI	GGCC	2 cut(s)	134, 389
BsiHKAI	GWGCWC	1 cut(s)	12
BsiSI	CCGG	1 cut(s)	273
BslFI	GGGAC	1 cut(s)	16
BslI	CCNNNNNNNGG	4 cut(s)	130, 557, 558, 705
BsmAI	GTCTC	1 cut(s)	645
BsmFI	GGGAC	1 cut(s)	16
BsmI	GAATGC	1 cut(s)	377
BsnI	GGCC	2 cut(s)	134, 389
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp1407I	TGTACA	1 cut(s)	333
Bsp143I	GATC	1 cut(s)	685
BspACI	CCGC	8 cut(s)	212, 222, 258, 524, 530, 574, 690, 696
BspANI	GGCC	2 cut(s)	134, 389
BspLI	GGNNCC	5 cut(s)	99, 186, 226, 262, 271
BspMAI	CTGCAG	1 cut(s)	589
BspPI	GGATC	1 cut(s)	680
BsrBI	CCGCTC	1 cut(s)	576
BsrGI	TGTACA	1 cut(s)	333
BssECI	CCNNGG	1 cut(s)	731
BssMI	GATC	1 cut(s)	685
BssT1I	CCWWGG	1 cut(s)	731
Bst2UI	CCWGG	2 cut(s)	39, 465
BstAUI	TGTACA	1 cut(s)	333
BstDEI	CTNAG	1 cut(s)	363
BstF5I	GGATG	2 cut(s)	333, 612
BstKTI	GATC	1 cut(s)	688
BstMAI	GTCTC	1 cut(s)	645
BstMBI	GATC	1 cut(s)	685
BstMWI	GCNNNNNNNGC	1 cut(s)	460
BstNI	CCWGG	2 cut(s)	39, 465
BstSCI	CCNGG	2 cut(s)	37, 463
BstSFI	CTRYAG	1 cut(s)	585
BstSLI	GKGCMC	1 cut(s)	12
BstX2I	RGATCY	1 cut(s)	685
BstYI	RGATCY	1 cut(s)	685
BsuI	GTATCC	1 cut(s)	35
BsuRI	GGCC	2 cut(s)	134, 389
BtgZI	GCGATG	1 cut(s)	444
BtsCI	GGATG	2 cut(s)	333, 612
BtsI	GCAGTG	1 cut(s)	541
BtsIMutI	CAGTG	2 cut(s)	436, 541
Csp6I	GTAC	1 cut(s)	334
CspCI	CAANNNNNGTGG	4 cut(s)	48, 83, 516, 551
CviAII	CATG	3 cut(s)	337, 508, 592
CviQI	GTAC	1 cut(s)	334
DdeI	CTNAG	1 cut(s)	363
DpnI	GATC	1 cut(s)	687
DpnII	GATC	1 cut(s)	685
EaeI	YGGCCR	1 cut(s)	132
EciI	GGCGGA	1 cut(s)	273
Eco130I	CCWWGG	1 cut(s)	731
Eco147I	AGGCCT	1 cut(s)	389
EcoRII	CCWGG	2 cut(s)	37, 463
EcoT14I	CCWWGG	1 cut(s)	731
ErhI	CCWWGG	1 cut(s)	731
FaeI	CATG	3 cut(s)	340, 511, 595
FaiI	YATR	8 cut(s)	284, 305, 338, 399, 474, 485, 509, 593
FalI	AAGNNNNNCTT	2 cut(s)	108, 140
FaqI	GGGAC	1 cut(s)	16
FatI	CATG	3 cut(s)	336, 507, 591
FauI	CCCGC	2 cut(s)	531, 697
Fnu4HI	GCNGC	1 cut(s)	574
FokI	GGATG	2 cut(s)	340, 599
Fsp4HI	GCNGC	1 cut(s)	574
FspBI	CTAG	2 cut(s)	249, 414
GluI	GCNGC	1 cut(s)	574
GsuI	CTGGAG	2 cut(s)	21, 666
HaeIII	GGCC	2 cut(s)	134, 389
HapII	CCGG	1 cut(s)	273
Hin1II	CATG	3 cut(s)	340, 511, 595
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	7 cut(s)	150, 200, 245, 312, 538, 600, 653
HpaII	CCGG	1 cut(s)	273
HphI	GGTGA	1 cut(s)	595
Hpy166II	GTNNAC	2 cut(s)	10, 25
Hpy188I	TCNGA	1 cut(s)	346
Hpy188III	TCNNGA	2 cut(s)	490, 683
Hpy8I	GTNNAC	2 cut(s)	10, 25
HpyAV	CCTTC	1 cut(s)	238
HpyCH4V	TGCA	6 cut(s)	10, 85, 377, 454, 546, 587
HpyF10VI	GCNNNNNNNGC	1 cut(s)	460
HpyF3I	CTNAG	1 cut(s)	363
Hsp92II	CATG	3 cut(s)	340, 511, 595
Kzo9I	GATC	1 cut(s)	685
LmnI	GCTCC	1 cut(s)	112
LweI	GCATC	1 cut(s)	350
MaeI	CTAG	2 cut(s)	249, 414
MaeIII	GTNAC	1 cut(s)	367
MalI	GATC	1 cut(s)	687
MbiI	CCGCTC	1 cut(s)	576
MboI	GATC	1 cut(s)	685
MboII	GAAGA	1 cut(s)	491
MflI	RGATCY	1 cut(s)	685
MhlI	GDGCHC	1 cut(s)	12
MlsI	TGGCCA	1 cut(s)	134
MluCI	AATT	1 cut(s)	89
MluNI	TGGCCA	1 cut(s)	134
MlyI	GAGTC	5 cut(s)	144, 209, 239, 594, 647
MmeI	TCCRAC	1 cut(s)	406
MnlI	CCTC	8 cut(s)	45, 88, 400, 523, 579, 647, 702, 705
Mox20I	TGGCCA	1 cut(s)	134
MscI	TGGCCA	1 cut(s)	134
Msp20I	TGGCCA	1 cut(s)	134
MspI	CCGG	1 cut(s)	273
MspR9I	CCNGG	2 cut(s)	39, 465
Mva1269I	GAATGC	1 cut(s)	377
MvaI	CCWGG	2 cut(s)	39, 465
MwoI	GCNNNNNNNGC	1 cut(s)	460
NdeII	GATC	1 cut(s)	685
NlaIII	CATG	3 cut(s)	340, 511, 595
NlaIV	GGNNCC	5 cut(s)	99, 186, 226, 262, 271
PceI	AGGCCT	1 cut(s)	389
PcsI	WCGNNNNNNNCGW	1 cut(s)	467
PctI	GAATGC	1 cut(s)	377
PfeI	GAWTC	2 cut(s)	312, 538
PfoI	TCCNGGA	1 cut(s)	37
PkrI	GCNGC	1 cut(s)	575
PleI	GAGTC	5 cut(s)	144, 208, 239, 594, 647
PpsI	GAGTC	5 cut(s)	144, 208, 239, 594, 647
Psp6I	CCWGG	2 cut(s)	37, 463
PspGI	CCWGG	2 cut(s)	37, 463
PspN4I	GGNNCC	5 cut(s)	99, 186, 226, 262, 271
PstI	CTGCAG	1 cut(s)	589
PsuI	RGATCY	1 cut(s)	685
RsaI	GTAC	1 cut(s)	335
RsaNI	GTAC	1 cut(s)	334
SatI	GCNGC	1 cut(s)	574
Sau3AI	GATC	1 cut(s)	685
SchI	GAGTC	5 cut(s)	144, 209, 239, 594, 647
ScrFI	CCNGG	2 cut(s)	39, 465
SduI	GDGCHC	1 cut(s)	12
SetI	ASST	5 cut(s)	109, 126, 369, 571, 639
SfaNI	GCATC	1 cut(s)	350
SfcI	CTRYAG	1 cut(s)	585
Sse9I	AATT	1 cut(s)	89
SseBI	AGGCCT	1 cut(s)	389
SsiI	CCGC	8 cut(s)	212, 222, 258, 524, 530, 574, 690, 696
SspMI	CTAG	2 cut(s)	249, 414
StuI	AGGCCT	1 cut(s)	389
StyD4I	CCNGG	2 cut(s)	37, 463
StyI	CCWWGG	1 cut(s)	731
TaqI	TCGA	2 cut(s)	231, 563
TasI	AATT	1 cut(s)	89
TatI	WGTACW	1 cut(s)	333
TauI	GCSGC	1 cut(s)	576
TfiI	GAWTC	2 cut(s)	312, 538
TscAI	CASTG	2 cut(s)	436, 548
TspDTI	ATGAA	2 cut(s)	299, 419
TspGWI	ACGGA	2 cut(s)	282, 324
TspRI	CASTG	2 cut(s)	436, 548
VneI	GTGCAC	1 cut(s)	8
XspI	CTAG	2 cut(s)	249, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.