Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0028783

Physical Location & Seq

Genomic Coordinates Reverse (-)

22457624 .. 22457992

Gene Structure 369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1188100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGCAGAGCTATTGGAAAAGGCCGGGTAGTCCTATTGACAACAATGCAGTTCCAACTGTAAAGAGCTTGCAAAAAGTGCTTAATGAAGCTGGCAACCATAGCACAACGCAGGAAGCCATAGAAGTTGGAAACTCTGCGGGAGTTTATCGTATCATCCTCACCCACTTCAGCCAGCGATATCCGAAAATCCCAGTATTTGATGATATACACATGCATAAGACATGCATTAGATTTGACATTATGAATATTAACATTGCTAATTTTCCTGTGGCCCCAAAGGTACTTCCATATTTGAAACTGCTTTTTAGAGACGAGATGATTGTTGACGAGGAAGATGAGTTGATAAAGGCTGCAAGTGTGGCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0031123 GO:0034414 GO:0034470 GO:0034641 GO:0034660 GO:0042779 GO:0042780 GO:0042781 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043628 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0072684 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140053 GO:0140098 GO:1901360 GO:1905267

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Lactamase_B_2 Lactamase_B_4

Protein Analysis

123

Amino Acids

13.81

Weight (kDa)

6.4

Isoelectric Point (pI)

48.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028783)

Species	Orthologous Gene IDs
malus_domestica	MD17G1188100.v1.1
pyrus_communis	pycom17g19690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	137
AcuI	CTGAAG	1 cut(s)	151
AfaI	GTAC	1 cut(s)	282
AgsI	TTSAA	1 cut(s)	295
AluBI	AGCT	3 cut(s)	9, 66, 89
AluI	AGCT	3 cut(s)	9, 66, 89
Alw26I	GTCTC	1 cut(s)	303
AoxI	GGCC	2 cut(s)	20, 270
ApeKI	GCWGC	1 cut(s)	350
AspS9I	GGNCC	1 cut(s)	271
AsuC2I	CCSGG	1 cut(s)	24
AsuHPI	GGTGA	1 cut(s)	151
BbvI	GCAGC	1 cut(s)	337
BcnI	CCSGG	1 cut(s)	24
BcoDI	GTCTC	1 cut(s)	303
BisI	GCNGC	1 cut(s)	351
BlsI	GCNGC	1 cut(s)	352
Bme1390I	CCNGG	1 cut(s)	24
BmgT120I	GGNCC	1 cut(s)	271
BmiI	GGNNCC	1 cut(s)	273
BmrFI	CCNGG	1 cut(s)	24
BmrI	ACTGGG	1 cut(s)	185
BmuI	ACTGGG	1 cut(s)	185
BpuMI	CCSGG	1 cut(s)	24
Bse1I	ACTGG	1 cut(s)	191
Bse3DI	GCAATG	1 cut(s)	252
BseGI	GGATG	1 cut(s)	153
BseMI	GCAATG	1 cut(s)	252
BseNI	ACTGG	1 cut(s)	191
BseXI	GCAGC	1 cut(s)	337
BshFI	GGCC	2 cut(s)	22, 272
BsiSI	CCGG	1 cut(s)	23
BsmAI	GTCTC	1 cut(s)	303
BsmBI	CGTCTC	1 cut(s)	303
BsnI	GGCC	2 cut(s)	22, 272
BspACI	CCGC	1 cut(s)	137
BspANI	GGCC	2 cut(s)	22, 272
BspLI	GGNNCC	1 cut(s)	273
BsrDI	GCAATG	1 cut(s)	252
BsrI	ACTGG	1 cut(s)	191
Bst4CI	ACNGT	1 cut(s)	58
BstAPI	GCANNNNNTGC	1 cut(s)	76
BstC8I	GCNNGC	3 cut(s)	68, 91, 173
BstF5I	GGATG	1 cut(s)	153
BstMAI	GTCTC	1 cut(s)	303
BstMWI	GCNNNNNNNGC	3 cut(s)	76, 99, 359
BstNSI	RCATGY	2 cut(s)	214, 225
BstSCI	CCNGG	1 cut(s)	22
BstV1I	GCAGC	1 cut(s)	337
BsuRI	GGCC	2 cut(s)	22, 272
BtsCI	GGATG	1 cut(s)	153
Cac8I	GCNNGC	3 cut(s)	68, 91, 173
Cfr13I	GGNCC	1 cut(s)	271
Csp6I	GTAC	1 cut(s)	281
CviAII	CATG	2 cut(s)	211, 222
CviJI	RGCY	9 cut(s)	9, 22, 66, 89, 116, 171, 272, 350, 362
CviKI_1	RGCY	9 cut(s)	9, 22, 66, 89, 116, 171, 272, 350, 362
CviQI	GTAC	1 cut(s)	281
Eco32I	GATATC	1 cut(s)	179
Eco57I	CTGAAG	1 cut(s)	151
EcoRV	GATATC	1 cut(s)	179
EcoT22I	ATGCAT	2 cut(s)	216, 227
Esp3I	CGTCTC	1 cut(s)	303
FaeI	CATG	2 cut(s)	214, 225
FaiI	YATR	8 cut(s)	99, 119, 206, 212, 216, 223, 242, 289
FalI	AAGNNNNNCTT	1 cut(s)	346
FatI	CATG	2 cut(s)	210, 221
FauI	CCCGC	1 cut(s)	130
Fnu4HI	GCNGC	1 cut(s)	351
FokI	GGATG	1 cut(s)	140
Fsp4HI	GCNGC	1 cut(s)	351
GluI	GCNGC	1 cut(s)	351
HaeIII	GGCC	2 cut(s)	22, 272
HapII	CCGG	1 cut(s)	23
Hin1II	CATG	2 cut(s)	214, 225
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	1 cut(s)	183
Hpy188III	TCNNGA	1 cut(s)	366
Hpy8I	GTNNAC	1 cut(s)	325
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	6 cut(s)	4, 47, 70, 214, 225, 353
HpyF10VI	GCNNNNNNNGC	3 cut(s)	76, 99, 359
Hsp92II	CATG	2 cut(s)	214, 225
LpnPI	CCDG	6 cut(s)	36, 75, 95, 185, 204, 279
Lsp1109I	GCAGC	1 cut(s)	337
MboII	GAAGA	1 cut(s)	344
MluCI	AATT	1 cut(s)	259
MmeI	TCCRAC	2 cut(s)	77, 106
MnlI	CCTC	2 cut(s)	167, 322
Mph1103I	ATGCAT	2 cut(s)	216, 227
MseI	TTAA	2 cut(s)	81, 249
MspI	CCGG	1 cut(s)	23
MspR9I	CCNGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	3 cut(s)	76, 99, 359
NciI	CCSGG	1 cut(s)	24
NlaIII	CATG	2 cut(s)	214, 225
NlaIV	GGNNCC	1 cut(s)	273
NsiI	ATGCAT	2 cut(s)	216, 227
NspI	RCATGY	2 cut(s)	214, 225
PkrI	GCNGC	1 cut(s)	352
PspN4I	GGNNCC	1 cut(s)	273
PspPI	GGNCC	1 cut(s)	271
RsaI	GTAC	1 cut(s)	282
RsaNI	GTAC	1 cut(s)	281
SaqAI	TTAA	2 cut(s)	81, 249
SatI	GCNGC	1 cut(s)	351
Sau96I	GGNCC	1 cut(s)	271
ScrFI	CCNGG	1 cut(s)	24
SetI	ASST	4 cut(s)	11, 68, 91, 282
Sse9I	AATT	1 cut(s)	259
SsiI	CCGC	1 cut(s)	137
SspI	AATATT	1 cut(s)	247
StyD4I	CCNGG	1 cut(s)	22
TaaI	ACNGT	1 cut(s)	58
TasI	AATT	1 cut(s)	259
Tru1I	TTAA	2 cut(s)	81, 249
Tru9I	TTAA	2 cut(s)	81, 249
TseI	GCWGC	1 cut(s)	350
TspDTI	ATGAA	2 cut(s)	99, 257
XceI	RCATGY	2 cut(s)	214, 225
Zsp2I	ATGCAT	2 cut(s)	216, 227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.