Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0028783

Physical Location & Seq

Genomic Coordinates Reverse (-)

17626716 .. 17627444

Gene Structure 729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g19690.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGCCGAGCTATTGGAAAAGGCCGGGTAGTCCTATTGACAACAATGCAGTTCCAACTGTAAAGAGCTTGCAAAAGTGCTTAATGATGCTGGTTTGGAAGCCTTGGTTAGTTTTCTTGTCATCCACTGTCCTGTTGGAAAAAATGATTCCGGTTTGGAAGGTTGTGTTCTCAGGTGATACTAGGCCCCGCCCAGAACTTATAGAAGCATCTCACGGTCCAACAGTTCTAATACATGAGGCAAGTTACGATATTTATTGTGCAACTTTTGAGGATGGCATGGCGGACAAGGCGGTAGCAAGAAACCATAGCACAACGCAGGAAGCCATAGAACGATATCCGAAAATCCAAGTGTTTGATGATACACGCATGCATAAGACATGCATTAGATTTGACATGATGAATATTAACATTGCTAATTTGCCTGTGGCCCCAAAGGTACTTCCACATTTGGAACTGCTTTTTAGAGACGAGATGATTGTTGACGAGGAAGATGAGTTGATAAAGACTGCAAGTGTGGCTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0003674 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006399 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0031123 GO:0034414 GO:0034470 GO:0034641 GO:0034660 GO:0042779 GO:0042780 GO:0042781 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043628 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0072684 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0140053 GO:0140098 GO:1901360 GO:1905267

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Lactamase_B_2 Lactamase_B_4

Protein Analysis

175

Amino Acids

19.87

Weight (kDa)

5.73

Isoelectric Point (pI)

51.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028783)

Species	Orthologous Gene IDs
malus_domestica	MD17G1188100.v1.1
pyrus_communis	pycom17g19690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	187, 281, 290
AfaI	GTAC	1 cut(s)	438
AluBI	AGCT	2 cut(s)	9, 66
AluI	AGCT	2 cut(s)	9, 66
Alw26I	GTCTC	1 cut(s)	459
AoxI	GGCC	3 cut(s)	20, 182, 426
AspS9I	GGNCC	3 cut(s)	183, 215, 427
AsuC2I	CCSGG	1 cut(s)	24
AsuHPI	GGTGA	1 cut(s)	185
AvaII	GGWCC	1 cut(s)	215
BccI	CCATC	1 cut(s)	266
BcnI	CCSGG	1 cut(s)	24
BcoDI	GTCTC	1 cut(s)	459
BfaI	CTAG	1 cut(s)	180
Bme1390I	CCNGG	1 cut(s)	24
Bme18I	GGWCC	1 cut(s)	215
BmgT120I	GGNCC	3 cut(s)	183, 215, 427
BmiI	GGNNCC	2 cut(s)	185, 429
BmrFI	CCNGG	1 cut(s)	24
BmsI	GCATC	2 cut(s)	75, 215
BpuMI	CCSGG	1 cut(s)	24
BsaJI	CCNNGG	1 cut(s)	101
BsaWI	WCCGGW	1 cut(s)	148
Bse3DI	GCAATG	1 cut(s)	408
BseDI	CCNNGG	1 cut(s)	101
BseGI	GGATG	2 cut(s)	119, 277
BseMI	GCAATG	1 cut(s)	408
BseMII	CTCAG	1 cut(s)	183
BshFI	GGCC	3 cut(s)	22, 184, 428
BsiSI	CCGG	2 cut(s)	23, 149
BsmAI	GTCTC	1 cut(s)	459
BsmBI	CGTCTC	1 cut(s)	459
BsnI	GGCC	3 cut(s)	22, 184, 428
BspACI	CCGC	3 cut(s)	187, 281, 290
BspANI	GGCC	3 cut(s)	22, 184, 428
BspCNI	CTCAG	1 cut(s)	182
BspLI	GGNNCC	2 cut(s)	185, 429
BsrDI	GCAATG	1 cut(s)	408
BssECI	CCNNGG	1 cut(s)	101
BssT1I	CCWWGG	1 cut(s)	101
Bst4CI	ACNGT	4 cut(s)	58, 127, 215, 223
BstC8I	GCNNGC	2 cut(s)	68, 368
BstDEI	CTNAG	1 cut(s)	169
BstF5I	GGATG	2 cut(s)	119, 277
BstMAI	GTCTC	1 cut(s)	459
BstMWI	GCNNNNNNNGC	2 cut(s)	287, 515
BstNSI	RCATGY	2 cut(s)	370, 381
BstSCI	CCNGG	1 cut(s)	22
BsuRI	GGCC	3 cut(s)	22, 184, 428
BtsCI	GGATG	2 cut(s)	119, 277
BtsIMutI	CAGTG	1 cut(s)	123
Cac8I	GCNNGC	2 cut(s)	68, 368
Cfr13I	GGNCC	3 cut(s)	183, 215, 427
Csp6I	GTAC	1 cut(s)	437
CviAII	CATG	5 cut(s)	233, 277, 367, 378, 394
CviJI	RGCY	8 cut(s)	9, 22, 66, 100, 184, 323, 428, 518
CviKI_1	RGCY	8 cut(s)	9, 22, 66, 100, 184, 323, 428, 518
CviQI	GTAC	1 cut(s)	437
DdeI	CTNAG	1 cut(s)	169
EciI	GGCGGA	1 cut(s)	296
Eco130I	CCWWGG	1 cut(s)	101
Eco32I	GATATC	1 cut(s)	335
Eco47I	GGWCC	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	183
EcoRV	GATATC	1 cut(s)	335
EcoT14I	CCWWGG	1 cut(s)	101
EcoT22I	ATGCAT	2 cut(s)	372, 383
ErhI	CCWWGG	1 cut(s)	101
Esp3I	CGTCTC	1 cut(s)	459
FaeI	CATG	5 cut(s)	236, 280, 370, 381, 397
FaiI	YATR	9 cut(s)	200, 234, 278, 306, 326, 368, 372, 379, 395
FalI	AAGNNNNNCTT	1 cut(s)	502
FatI	CATG	5 cut(s)	232, 276, 366, 377, 393
FauI	CCCGC	1 cut(s)	194
FokI	GGATG	2 cut(s)	106, 284
FspBI	CTAG	1 cut(s)	180
HaeIII	GGCC	3 cut(s)	22, 184, 428
HapII	CCGG	2 cut(s)	23, 149
Hin1II	CATG	5 cut(s)	236, 280, 370, 381, 397
HincII	GTYRAC	1 cut(s)	481
HindII	GTYRAC	1 cut(s)	481
HinfI	GANTC	1 cut(s)	145
HpaII	CCGG	2 cut(s)	23, 149
HphI	GGTGA	1 cut(s)	185
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	1 cut(s)	339
Hpy188III	TCNNGA	1 cut(s)	522
Hpy8I	GTNNAC	1 cut(s)	481
HpyAV	CCTTC	1 cut(s)	151
HpyCH4III	ACNGT	4 cut(s)	58, 127, 215, 223
HpyCH4V	TGCA	6 cut(s)	47, 70, 260, 370, 381, 509
HpyF10VI	GCNNNNNNNGC	2 cut(s)	287, 515
HpyF3I	CTNAG	1 cut(s)	169
Hsp92II	CATG	5 cut(s)	236, 280, 370, 381, 397
LpnPI	CCDG	8 cut(s)	36, 74, 143, 156, 162, 204, 302, 435
LweI	GCATC	2 cut(s)	75, 215
MaeI	CTAG	1 cut(s)	180
MaeIII	GTNAC	1 cut(s)	242
MboII	GAAGA	1 cut(s)	500
MluCI	AATT	1 cut(s)	415
MmeI	TCCRAC	3 cut(s)	77, 114, 242
MnlI	CCTC	3 cut(s)	229, 262, 478
Mph1103I	ATGCAT	2 cut(s)	372, 383
MseI	TTAA	2 cut(s)	80, 405
MspI	CCGG	2 cut(s)	23, 149
MspR9I	CCNGG	1 cut(s)	24
MwoI	GCNNNNNNNGC	2 cut(s)	287, 515
NciI	CCSGG	1 cut(s)	24
NlaIII	CATG	5 cut(s)	236, 280, 370, 381, 397
NlaIV	GGNNCC	2 cut(s)	185, 429
NmeAIII	GCCGAG	1 cut(s)	30
NsiI	ATGCAT	2 cut(s)	372, 383
NspI	RCATGY	2 cut(s)	370, 381
PaeI	GCATGC	1 cut(s)	370
PfeI	GAWTC	1 cut(s)	145
PspN4I	GGNNCC	2 cut(s)	185, 429
PspPI	GGNCC	3 cut(s)	183, 215, 427
RsaI	GTAC	1 cut(s)	438
RsaNI	GTAC	1 cut(s)	437
SaqAI	TTAA	2 cut(s)	80, 405
Sau96I	GGNCC	3 cut(s)	183, 215, 427
ScrFI	CCNGG	1 cut(s)	24
SetI	ASST	5 cut(s)	11, 68, 162, 175, 438
SfaNI	GCATC	2 cut(s)	75, 215
SinI	GGWCC	1 cut(s)	215
SphI	GCATGC	1 cut(s)	370
Sse9I	AATT	1 cut(s)	415
SsiI	CCGC	3 cut(s)	187, 281, 290
SspI	AATATT	1 cut(s)	403
SspMI	CTAG	1 cut(s)	180
StyD4I	CCNGG	1 cut(s)	22
StyI	CCWWGG	1 cut(s)	101
TaaI	ACNGT	4 cut(s)	58, 127, 215, 223
TasI	AATT	1 cut(s)	415
TfiI	GAWTC	1 cut(s)	145
Tru1I	TTAA	2 cut(s)	80, 405
Tru9I	TTAA	2 cut(s)	80, 405
TscAI	CASTG	1 cut(s)	130
TspDTI	ATGAA	1 cut(s)	413
TspRI	CASTG	1 cut(s)	130
VpaK11BI	GGWCC	1 cut(s)	215
XceI	RCATGY	2 cut(s)	370, 381
XcmI	CCANNNNNNNNNTGG	1 cut(s)	130
XspI	CTAG	1 cut(s)	180
Zsp2I	ATGCAT	2 cut(s)	372, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.