Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0028780

Physical Location & Seq

Genomic Coordinates Forward (+)

33748117 .. 33748545

Gene Structure 429 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1277300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGCACGAAGAAGCAGAATTGATCTTGTCAAATGCCTGTAAGAAGACTAAAGGTAAAGGGTCTTTCCTCGGGGCTCGGGAAATGCTCATGGTTCACGCCTTGAACACCCGTAAGGTGGATTTGGCTGATAGCCATTTGGGAGCTGCTGTTTCAGAAAGCAAGGATGGCGAATGGCATCCATCCCCAGATACCAGAATTGCATTTCTCAAGTATTTTGAGGACGAGAAAGATGTTGATGGTGCTGAGAAATTTTGCAAGATTCTGAAGCGTCTAGGTTGTCTCAGTTGCAATGAGTATTGTTTGTTGCTTAAGACTTACATAGCTGCTGGAAAATCGGATCCTGCGATGCGTCAGAGATTAAAGGAAGAGCATATTGAAATCAGCCCCGAGCTTGAGCTTGAGAATTTACTTGAAAAGGTTTCCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

143

Amino Acids

16.0

Weight (kDa)

5.6

Isoelectric Point (pI)

43.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028780)

Species	Orthologous Gene IDs
malus_domestica	MD17G1277300.v1.1
pyrus_communis	pycom17g27420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	332, 345
AcsI	RAATTY	2 cut(s)	248, 403
AcuI	CTGAAG	1 cut(s)	284
AfiI	CCNNNNNNNGG	1 cut(s)	115
AflII	CTTAAG	1 cut(s)	308
AgsI	TTSAA	3 cut(s)	103, 377, 413
AluBI	AGCT	4 cut(s)	143, 323, 391, 397
AluI	AGCT	4 cut(s)	143, 323, 391, 397
Alw26I	GTCTC	1 cut(s)	284
AlwI	GGATC	2 cut(s)	332, 345
Ama87I	CYCGRG	3 cut(s)	68, 75, 386
ApeKI	GCWGC	2 cut(s)	143, 323
ApoI	RAATTY	2 cut(s)	248, 403
AvaI	CYCGRG	3 cut(s)	68, 75, 386
BamHI	GGATCC	1 cut(s)	337
BanII	GRGCYC	1 cut(s)	76
BbsI	GAAGAC	1 cut(s)	50
BbvI	GCAGC	2 cut(s)	130, 310
BccI	CCATC	3 cut(s)	158, 187, 230
BcoDI	GTCTC	1 cut(s)	284
BfaI	CTAG	1 cut(s)	272
BfrI	CTTAAG	1 cut(s)	308
BisI	GCNGC	2 cut(s)	144, 324
BlsI	GCNGC	2 cut(s)	145, 325
BmeT110I	CYCGRG	3 cut(s)	68, 75, 386
BmiI	GGNNCC	1 cut(s)	339
BmsI	GCATC	2 cut(s)	184, 336
BpiI	GAAGAC	1 cut(s)	50
BpuEI	CTTGAG	3 cut(s)	191, 413, 419
BsaJI	CCNNGG	1 cut(s)	67
BsaXI	ACNNNNNCTCC	2 cut(s)	132, 162
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse3DI	GCAATG	1 cut(s)	295
BseDI	CCNNGG	1 cut(s)	67
BseGI	GGATG	3 cut(s)	169, 175, 179
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMI	GCAATG	1 cut(s)	295
BseMII	CTCAG	2 cut(s)	234, 295
BseXI	GCAGC	2 cut(s)	130, 310
BsiHKCI	CYCGRG	3 cut(s)	68, 75, 386
BslI	CCNNNNNNNGG	1 cut(s)	115
BsmAI	GTCTC	1 cut(s)	284
BsoBI	CYCGRG	3 cut(s)	68, 75, 386
Bsp1286I	GDGCHC	1 cut(s)	76
Bsp143I	GATC	2 cut(s)	21, 337
BspCNI	CTCAG	2 cut(s)	235, 294
BspLI	GGNNCC	1 cut(s)	339
BspPI	GGATC	2 cut(s)	332, 345
BspQI	GCTCTTC	1 cut(s)	360
BspTI	CTTAAG	1 cut(s)	308
BsrDI	GCAATG	1 cut(s)	295
BssECI	CCNNGG	1 cut(s)	67
BssMI	GATC	2 cut(s)	21, 337
Bst6I	CTCTTC	1 cut(s)	360
BstAFI	CTTAAG	1 cut(s)	308
BstDEI	CTNAG	2 cut(s)	243, 281
BstF5I	GGATG	3 cut(s)	169, 175, 179
BstKTI	GATC	2 cut(s)	24, 340
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	2 cut(s)	21, 337
BstMWI	GCNNNNNNNGC	1 cut(s)	165
BstV1I	GCAGC	2 cut(s)	130, 310
BstV2I	GAAGAC	1 cut(s)	50
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BtgZI	GCGATG	1 cut(s)	359
BtsCI	GGATG	3 cut(s)	169, 175, 179
CseI	GACGC	2 cut(s)	257, 338
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	8 cut(s)	74, 125, 132, 143, 323, 384, 391, 397
CviKI_1	RGCY	8 cut(s)	74, 125, 132, 143, 323, 384, 391, 397
DdeI	CTNAG	2 cut(s)	243, 281
DpnI	GATC	2 cut(s)	23, 339
DpnII	GATC	2 cut(s)	21, 337
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
Eco24I	GRGCYC	1 cut(s)	76
Eco57I	CTGAAG	1 cut(s)	284
Eco88I	CYCGRG	3 cut(s)	68, 75, 386
EcoT38I	GRGCYC	1 cut(s)	76
FaeI	CATG	1 cut(s)	91
FaiI	YATR	3 cut(s)	89, 320, 372
FatI	CATG	1 cut(s)	87
Fnu4HI	GCNGC	2 cut(s)	144, 324
FokI	GGATG	3 cut(s)	162, 166, 176
FriOI	GRGCYC	1 cut(s)	76
Fsp4HI	GCNGC	2 cut(s)	144, 324
FspBI	CTAG	1 cut(s)	272
GluI	GCNGC	2 cut(s)	144, 324
HgaI	GACGC	2 cut(s)	257, 338
Hin1II	CATG	1 cut(s)	91
HinfI	GANTC	1 cut(s)	259
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	5 cut(s)	154, 264, 337, 354, 424
Hpy188III	TCNNGA	1 cut(s)	77
Hpy8I	GTNNAC	1 cut(s)	94
HpyCH4V	TGCA	4 cut(s)	4, 200, 255, 288
HpyF10VI	GCNNNNNNNGC	1 cut(s)	165
HpyF3I	CTNAG	2 cut(s)	243, 281
Hsp92II	CATG	1 cut(s)	91
Kzo9I	GATC	2 cut(s)	21, 337
LguI	GCTCTTC	1 cut(s)	360
LmnI	GCTCC	1 cut(s)	140
LpnPI	CCDG	5 cut(s)	49, 198, 205, 312, 354
Lsp1109I	GCAGC	2 cut(s)	130, 310
LweI	GCATC	2 cut(s)	184, 336
MaeI	CTAG	1 cut(s)	272
MalI	GATC	2 cut(s)	23, 339
MboI	GATC	2 cut(s)	21, 337
MboII	GAAGA	3 cut(s)	20, 55, 377
MflI	RGATCY	1 cut(s)	337
MhlI	GDGCHC	1 cut(s)	76
MluCI	AATT	4 cut(s)	17, 195, 248, 403
MnlI	CCTC	2 cut(s)	77, 211
MseI	TTAA	2 cut(s)	309, 359
MspCI	CTTAAG	1 cut(s)	308
MwoI	GCNNNNNNNGC	1 cut(s)	165
NdeII	GATC	2 cut(s)	21, 337
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	1 cut(s)	339
PciSI	GCTCTTC	1 cut(s)	360
PcsI	WCGNNNNNNNCGW	1 cut(s)	341
PfeI	GAWTC	1 cut(s)	259
PkrI	GCNGC	2 cut(s)	145, 325
PspN4I	GGNNCC	1 cut(s)	339
PsuI	RGATCY	1 cut(s)	337
SapI	GCTCTTC	1 cut(s)	360
SaqAI	TTAA	2 cut(s)	309, 359
SatI	GCNGC	2 cut(s)	144, 324
Sau3AI	GATC	2 cut(s)	21, 337
SduI	GDGCHC	1 cut(s)	76
SetI	ASST	8 cut(s)	55, 117, 145, 277, 325, 393, 399, 420
SfaNI	GCATC	2 cut(s)	184, 336
SmlI	CTYRAG	4 cut(s)	206, 308, 392, 398
SmoI	CTYRAG	4 cut(s)	206, 308, 392, 398
Sse9I	AATT	4 cut(s)	17, 195, 248, 403
SspMI	CTAG	1 cut(s)	272
TasI	AATT	4 cut(s)	17, 195, 248, 403
TfiI	GAWTC	1 cut(s)	259
Tru1I	TTAA	2 cut(s)	309, 359
Tru9I	TTAA	2 cut(s)	309, 359
TseI	GCWGC	2 cut(s)	143, 323
Vha464I	CTTAAG	1 cut(s)	308
XapI	RAATTY	2 cut(s)	248, 403
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.