Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0028780

Physical Location & Seq

Genomic Coordinates Forward (+)

25602945 .. 25603517

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g27420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGCTTCAGGCCCTTTGTGAGCTAAACGATATTGAGGAATTGAAAGAAATGTTTGAGGAATGGGAGTCCATTTGCTCCAAATATGATACGAGTTTGGCAAATGTTGCTATACGCGGGTACCTCAGTCAGGGCATGCACGAAGAAGCAGAATTGATCTTTGCAAATGCCTGTAAGAAGACTAAAGGTAAAGGGTCTTTCCTCGAGGCTCGGGAAATGCTCATGGTTCACGCCTTGAACACCCGTAAGGTGGATTTGGCTGATAACCATTTGGAAGCTGCTGTTTTGGCAAGCAAGGATGGGGAATGGCATCCATTCCCAGCTACCAAAATTGCATTTCTCAAGTATTTTGAGGACAAGAAGGATGCTGATGGTGCTGAGAAATTTTGCAAGATTCTGAAGTGTCTAGGTTATCTCAGTTGCAATGAGTATTGTTTGTTGCTTAAGACTTACATAGCTGCTGGTAAGTTGGAACCTGCAATGCGTCGGAGATTGAAGGAAAAGTATATTGAAATAAGCCCCGAGCTTGAGAATTTGCTTCAAAAGGTTTCCGCGAGTGAATTGACTGCTCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

191

Amino Acids

21.56

Weight (kDa)

5.52

Isoelectric Point (pI)

42.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028780)

Species	Orthologous Gene IDs
malus_domestica	MD17G1277300.v1.1
pyrus_communis	pycom17g27420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	200
Acc36I	ACCTGC	1 cut(s)	481
Acc65I	GGTACC	1 cut(s)	117
AccB1I	GGYRCC	1 cut(s)	117
AccII	CGCG	2 cut(s)	114, 551
AciI	CCGC	2 cut(s)	114, 549
AcsI	RAATTY	2 cut(s)	380, 529
AcuI	CTGAAG	1 cut(s)	416
AfaI	GTAC	1 cut(s)	119
AfiI	CCNNNNNNNGG	2 cut(s)	127, 247
AflII	CTTAAG	1 cut(s)	440
AgsI	TTSAA	5 cut(s)	43, 235, 493, 509, 539
AluBI	AGCT	5 cut(s)	22, 275, 320, 455, 523
AluI	AGCT	5 cut(s)	22, 275, 320, 455, 523
Ama87I	CYCGRG	3 cut(s)	200, 207, 518
AoxI	GGCC	1 cut(s)	9
ApeKI	GCWGC	2 cut(s)	275, 455
ApoI	RAATTY	2 cut(s)	380, 529
Asp718I	GGTACC	1 cut(s)	117
AspS9I	GGNCC	1 cut(s)	10
AvaI	CYCGRG	3 cut(s)	200, 207, 518
BaeI	ACNNNNGTAYC	4 cut(s)	101, 109, 134, 142
BanI	GGYRCC	1 cut(s)	117
BbsI	GAAGAC	1 cut(s)	182
BbvI	GCAGC	2 cut(s)	262, 442
BccI	CCATC	2 cut(s)	290, 362
BfaI	CTAG	2 cut(s)	404, 571
BfrI	CTTAAG	1 cut(s)	440
BfuAI	ACCTGC	1 cut(s)	481
BisI	GCNGC	2 cut(s)	276, 456
BlsI	GCNGC	2 cut(s)	277, 457
BmeT110I	CYCGRG	3 cut(s)	200, 207, 518
BmgT120I	GGNCC	1 cut(s)	10
BmiI	GGNNCC	2 cut(s)	119, 471
BmsI	GCATC	2 cut(s)	316, 352
BpiI	GAAGAC	1 cut(s)	182
BpuEI	CTTGAG	2 cut(s)	323, 545
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 247
Bse3DI	GCAATG	2 cut(s)	427, 483
BseGI	GGATG	3 cut(s)	301, 307, 367
BseLI	CCNNNNNNNGG	2 cut(s)	127, 247
BseMI	GCAATG	2 cut(s)	427, 483
BseMII	CTCAG	3 cut(s)	136, 366, 427
BseXI	GCAGC	2 cut(s)	262, 442
BseYI	CCCAGC	1 cut(s)	316
Bsh1236I	CGCG	2 cut(s)	114, 551
BshFI	GGCC	1 cut(s)	11
BshNI	GGYRCC	1 cut(s)	117
BsiHKCI	CYCGRG	3 cut(s)	200, 207, 518
BslI	CCNNNNNNNGG	2 cut(s)	127, 247
BsnI	GGCC	1 cut(s)	11
BsoBI	CYCGRG	3 cut(s)	200, 207, 518
Bsp143I	GATC	1 cut(s)	153
BspACI	CCGC	2 cut(s)	114, 549
BspANI	GGCC	1 cut(s)	11
BspCNI	CTCAG	3 cut(s)	135, 367, 426
BspFNI	CGCG	2 cut(s)	114, 551
BspLI	GGNNCC	2 cut(s)	119, 471
BspMI	ACCTGC	1 cut(s)	481
BspT107I	GGYRCC	1 cut(s)	117
BspTI	CTTAAG	1 cut(s)	440
BsrDI	GCAATG	2 cut(s)	427, 483
BssMI	GATC	1 cut(s)	153
BstAFI	CTTAAG	1 cut(s)	440
BstAPI	GCANNNNNTGC	1 cut(s)	104
BstC8I	GCNNGC	2 cut(s)	134, 289
BstDEI	CTNAG	3 cut(s)	122, 375, 413
BstENI	CCTNNNNNAGG	1 cut(s)	125
BstF5I	GGATG	3 cut(s)	301, 307, 367
BstFNI	CGCG	2 cut(s)	114, 551
BstKTI	GATC	1 cut(s)	156
BstMBI	GATC	1 cut(s)	153
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 284, 371
BstNSI	RCATGY	1 cut(s)	136
BstUI	CGCG	2 cut(s)	114, 551
BstV1I	GCAGC	2 cut(s)	262, 442
BstV2I	GAAGAC	1 cut(s)	182
BsuRI	GGCC	1 cut(s)	11
BtsCI	GGATG	3 cut(s)	301, 307, 367
BveI	ACCTGC	1 cut(s)	481
Cac8I	GCNNGC	2 cut(s)	134, 289
Cfr13I	GGNCC	1 cut(s)	10
CseI	GACGC	1 cut(s)	470
Csp6I	GTAC	1 cut(s)	118
CviAII	CATG	2 cut(s)	133, 220
CviJI	RGCY	9 cut(s)	11, 22, 206, 257, 275, 320, 455, 516, 523
CviKI_1	RGCY	9 cut(s)	11, 22, 206, 257, 275, 320, 455, 516, 523
CviQI	GTAC	1 cut(s)	118
DdeI	CTNAG	3 cut(s)	122, 375, 413
DpnI	GATC	1 cut(s)	155
DpnII	GATC	1 cut(s)	153
Eco57I	CTGAAG	1 cut(s)	416
Eco88I	CYCGRG	3 cut(s)	200, 207, 518
EcoNI	CCTNNNNNAGG	1 cut(s)	125
EcoO109I	RGGNCCY	1 cut(s)	10
FaeI	CATG	2 cut(s)	136, 223
FaiI	YATR	6 cut(s)	84, 110, 134, 221, 452, 504
FatI	CATG	2 cut(s)	132, 219
FauI	CCCGC	1 cut(s)	107
Fnu4HI	GCNGC	2 cut(s)	276, 456
FokI	GGATG	3 cut(s)	294, 308, 374
Fsp4HI	GCNGC	2 cut(s)	276, 456
FspBI	CTAG	2 cut(s)	404, 571
GluI	GCNGC	2 cut(s)	276, 456
GsaI	CCCAGC	1 cut(s)	320
HaeIII	GGCC	1 cut(s)	11
HgaI	GACGC	1 cut(s)	470
Hin1II	CATG	2 cut(s)	136, 223
HinfI	GANTC	2 cut(s)	65, 391
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	2 cut(s)	396, 486
Hpy188III	TCNNGA	1 cut(s)	209
Hpy8I	GTNNAC	1 cut(s)	226
Hpy99I	CGWCG	1 cut(s)	486
HpyAV	CCTTC	2 cut(s)	352, 487
HpyCH4V	TGCA	6 cut(s)	136, 161, 332, 387, 420, 476
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 284, 371
HpyF3I	CTNAG	3 cut(s)	122, 375, 413
Hsp92II	CATG	2 cut(s)	136, 223
KpnI	GGTACC	1 cut(s)	121
Kzo9I	GATC	1 cut(s)	153
LmnI	GCTCC	2 cut(s)	80, 571
LpnPI	CCDG	5 cut(s)	113, 181, 330, 444, 486
Lsp1109I	GCAGC	2 cut(s)	262, 442
LweI	GCATC	2 cut(s)	316, 352
MaeI	CTAG	2 cut(s)	404, 571
MalI	GATC	1 cut(s)	155
MboI	GATC	1 cut(s)	153
MboII	GAAGA	2 cut(s)	152, 187
MluCI	AATT	6 cut(s)	38, 149, 327, 380, 529, 557
MlyI	GAGTC	1 cut(s)	74
MmeI	TCCRAC	2 cut(s)	447, 464
MnlI	CCTC	6 cut(s)	28, 49, 131, 196, 209, 343
MseI	TTAA	1 cut(s)	441
MspCI	CTTAAG	1 cut(s)	440
MvnI	CGCG	2 cut(s)	114, 551
MwoI	GCNNNNNNNGC	3 cut(s)	104, 284, 371
NdeII	GATC	1 cut(s)	153
NlaIII	CATG	2 cut(s)	136, 223
NlaIV	GGNNCC	2 cut(s)	119, 471
NspI	RCATGY	1 cut(s)	136
PaeI	GCATGC	1 cut(s)	136
PaeR7I	CTCGAG	1 cut(s)	200
PfeI	GAWTC	1 cut(s)	391
PkrI	GCNGC	2 cut(s)	277, 457
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
PspFI	CCCAGC	1 cut(s)	316
PspN4I	GGNNCC	2 cut(s)	119, 471
PspPI	GGNCC	1 cut(s)	10
PspXI	VCTCGAGB	1 cut(s)	200
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	2 cut(s)	276, 456
Sau3AI	GATC	1 cut(s)	153
Sau96I	GGNCC	1 cut(s)	10
SchI	GAGTC	1 cut(s)	74
SfaNI	GCATC	2 cut(s)	316, 352
Sfr274I	CTCGAG	1 cut(s)	200
SlaI	CTCGAG	1 cut(s)	200
SmlI	CTYRAG	4 cut(s)	200, 338, 440, 524
SmoI	CTYRAG	4 cut(s)	200, 338, 440, 524
SphI	GCATGC	1 cut(s)	136
Sse9I	AATT	6 cut(s)	38, 149, 327, 380, 529, 557
SsiI	CCGC	2 cut(s)	114, 549
SspMI	CTAG	2 cut(s)	404, 571
TaqI	TCGA	1 cut(s)	201
TasI	AATT	6 cut(s)	38, 149, 327, 380, 529, 557
TfiI	GAWTC	1 cut(s)	391
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TseI	GCWGC	2 cut(s)	275, 455
Vha464I	CTTAAG	1 cut(s)	440
XagI	CCTNNNNNAGG	1 cut(s)	125
XapI	RAATTY	2 cut(s)	380, 529
XceI	RCATGY	1 cut(s)	136
XhoI	CTCGAG	1 cut(s)	200
XspI	CTAG	2 cut(s)	404, 571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.