Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0021845

Physical Location & Seq

Genomic Coordinates Forward (+)

33990335 .. 33994735

Gene Structure 4401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1279400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGCTTCCGTAAGTGTGGTTCCTGCTTCTGGTCTAAGAGAGCCCGGTGGAAATGCAGTCGGTGTCGATAATTTGCCAAATGAGATGAATGACATGAAAATTAGGGATGACAAGGAAATGGGGGCAACTGTTGTTGATGGTAATGGAACGGAGGCGGGTCATATTATTGTCACAACTATTGGTGGAAAGAATGGCCAGCCAAAACAGACAATAAGCTATATGGCTGAGCGCGTTGTTGGACATGGATCTTTCGGATTGGTTTTCCAGGCCAAGTGCTTAGAAACTGGTGAAACTGTTGCTATTAAAAAGGTTCTTCAAGACAAGAGGTACAAGAACCGGGAGTTGCAAACCATGCGTCTTCTAGACCACCCAAACATTGTGTCTCTTAGACATTGTTTCTTTTCGACAACTGAAAAAGATGAGCTATACCTTAACCTCGTACTTGAGTATGTCCCCGAGACTGCCCATAGGGTGATCAAGCACTATAGTAAGATGAACCAGAGGATGCCCCATATTTATGTTAAACTTTACTTTTACCAGATTTGTAGAGCTCTTGCTTACATTCATAATACTATTGGAGTGTGCCACAGGGACATCAAGCCGCAAAATTTGTTGGTCAATCCCCATACTCACCAGCTTAAAATCTGTGACTTTGGGAGTGCGAAAGTTTTGGTAAAAGGGGAACCCAACATATCTTACATCTGTTCTAGGTACTATCGAGCACCTGAACTTATATTTGGTGCTACCGAATACACAACAGCCATTGACATCTGGTCTGCTGGCTGTGTTCTAGCTGAACTTCTGCTTGGACAGCCCCTGTTTCCCGGAGAAAGTGGAGTAGACCAGCTTGTTCAAATCATCAAGGTTTTAGGTACCCCAACGAGGGAGGAAATAAAATGCATGAACCCTAACTACACAGAGTTTAAGTTTCCCCAAATTAAAGCTCACCCGTGGCACAAGATATTTCACAAGCGCATGCCCCCAGAAGCTGTGGATCTCGTATCAAGGCTGCTGCAGTACTCTCCAAACCTTCGAAGTACAGCTTTGGAGGCCTTAGCTCATCCCTTCTTTGACGAGTTGCGTGATCCTAACACCCGCTTGCCAAATGGACGCTTCCTTCCCCCTTTGTTCAACTTTAAGGCTCATGAACTGAAGGGAGTGCCTGCAGAAATGCTTGTTAAGCTGATCCCGGAGCACGCAAGAAAACAGTGCGCCTTCCTTGGGTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko01521 ko04012 ko04062 ko04110 ko04150 ko04151 ko04310 ko04340 ko04341 ko04360 ko04390 ko04510 ko04550 ko04657 ko04660 ko04662 ko04711 ko04722 ko04728 ko04910 ko04916 ko04917 ko04919 ko04931 ko04932 ko04934 ko05010 ko05160 ko05162 ko05164 ko05165 ko05166 ko05167 ko05169 ko05200 ko05210 ko05213 ko05215 ko05217 ko05224 ko05225 ko05226 map01521 map04012 map04062 map04110 map04150 map04151 map04310 map04340 map04341 map04360 map04390 map04510 map04550 map04657 map04660 map04662 map04711 map04722 map04728 map04910 map04916 map04917 map04919 map04931 map04932 map04934 map05010 map05160 map05162 map05164 map05165 map05166 map05167 map05169 map05200 map05210 map05213 map05215 map05217 map05224 map05225 map05226

Pfam Domains

Protein Families

Pkinase

Protein Analysis

410

Amino Acids

46.13

Weight (kDa)

8.81

Isoelectric Point (pI)

36.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	74 - 357	3.8e-63	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	76 - 276	4.7e-25	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021845)

Species	Orthologous Gene IDs
malus_domestica	MD09G1287200.v1.1 MD17G1279400.v1.1
prunus_persica	Prupe.3G006000_v2.0.a1 Prupe.3G006000_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	872
AccB1I	GGYRCC	1 cut(s)	872
AccI	GTMKAC	1 cut(s)	840
AccII	CGCG	1 cut(s)	231
AciI	CCGC	3 cut(s)	155, 602, 1096
AclWI	GGATC	4 cut(s)	253, 1002, 1079, 1180
AcoI	YGGCCR	1 cut(s)	193
AcsI	RAATTY	1 cut(s)	607
AcuI	CTGAAG	1 cut(s)	1172
AfaI	GTAC	6 cut(s)	329, 441, 713, 874, 1019, 1039
AfiI	CCNNNNNNNGG	4 cut(s)	29, 882, 883, 1221
AgsI	TTSAA	3 cut(s)	317, 854, 1132
AhdI	GACNNNNNGTC	1 cut(s)	772
AjnI	CCWGG	1 cut(s)	264
AjuI	GAANNNNNNNTTGG	4 cut(s)	720, 752, 789, 821
Alw21I	GWGCWC	3 cut(s)	553, 724, 1197
Alw26I	GTCTC	2 cut(s)	387, 452
AlwI	GGATC	4 cut(s)	253, 1002, 1079, 1180
AlwNI	CAGNNNCTG	2 cut(s)	817, 989
Ama87I	CYCGRG	1 cut(s)	455
AoxI	GGCC	3 cut(s)	193, 267, 1050
ApeKI	GCWGC	2 cut(s)	1009, 1012
ApoI	RAATTY	1 cut(s)	607
ArsI	GACNNNNNNTTYG	4 cut(s)	340, 365, 372, 397
Asp718I	GGTACC	1 cut(s)	872
AspLEI	GCGC	3 cut(s)	231, 975, 1214
AsuC2I	CCSGG	4 cut(s)	45, 338, 825, 1190
AsuHPI	GGTGA	4 cut(s)	299, 484, 623, 938
AsuII	TTCGAA	1 cut(s)	1033
AvaI	CYCGRG	1 cut(s)	455
BalI	TGGCCA	1 cut(s)	195
BanI	GGYRCC	1 cut(s)	872
BanII	GRGCYC	2 cut(s)	45, 553
BbsI	GAAGAC	1 cut(s)	350
Bbv12I	GWGCWC	3 cut(s)	553, 724, 1197
BbvI	GCAGC	2 cut(s)	996, 999
BccI	CCATC	1 cut(s)	131
BciT130I	CCWGG	1 cut(s)	266
BclI	TGATCA	1 cut(s)	474
BcnI	CCSGG	4 cut(s)	45, 338, 825, 1190
BcoDI	GTCTC	2 cut(s)	387, 452
BfaI	CTAG	3 cut(s)	362, 708, 791
BfmI	CTRYAG	3 cut(s)	484, 1013, 1164
BisI	GCNGC	3 cut(s)	602, 1010, 1013
BlpI	GCTNAGC	1 cut(s)	225
BlsI	GCNGC	3 cut(s)	603, 1011, 1014
BmcAI	AGTACT	1 cut(s)	1019
Bme1390I	CCNGG	5 cut(s)	45, 266, 338, 825, 1190
BmeRI	GACNNNNNGTC	1 cut(s)	772
BmeT110I	CYCGRG	1 cut(s)	455
BmiI	GGNNCC	3 cut(s)	21, 684, 874
BmrFI	CCNGG	5 cut(s)	45, 266, 338, 825, 1190
BmsI	GCATC	1 cut(s)	495
BpiI	GAAGAC	1 cut(s)	350
Bpu10I	CCTNAGC	1 cut(s)	1054
Bpu1102I	GCTNAGC	1 cut(s)	225
Bpu14I	TTCGAA	1 cut(s)	1033
BpuEI	CTTGAG	1 cut(s)	464
BpuMI	CCSGG	4 cut(s)	45, 338, 825, 1190
BsaJI	CCNNGG	2 cut(s)	950, 1219
Bsc4I	CCNNNNNNNGG	4 cut(s)	29, 882, 883, 1221
Bse1I	ACTGG	1 cut(s)	289
BseBI	CCWGG	1 cut(s)	266
BseDI	CCNNGG	2 cut(s)	950, 1219
BseGI	GGATG	3 cut(s)	112, 510, 1060
BseLI	CCNNNNNNNGG	4 cut(s)	29, 882, 883, 1221
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	1 cut(s)	289
BseXI	GCAGC	2 cut(s)	996, 999
Bsh1236I	CGCG	1 cut(s)	231
BshFI	GGCC	3 cut(s)	195, 269, 1052
BshNI	GGYRCC	1 cut(s)	872
BsiHKAI	GWGCWC	3 cut(s)	553, 724, 1197
BsiHKCI	CYCGRG	1 cut(s)	455
BsiSI	CCGG	4 cut(s)	45, 337, 825, 1190
BslFI	GGGAC	2 cut(s)	437, 605
BslI	CCNNNNNNNGG	4 cut(s)	29, 882, 883, 1221
BsmAI	GTCTC	2 cut(s)	387, 452
BsmFI	GGGAC	2 cut(s)	437, 605
BsnI	GGCC	3 cut(s)	195, 269, 1052
BsoBI	CYCGRG	1 cut(s)	455
Bsp119I	TTCGAA	1 cut(s)	1033
Bsp1286I	GDGCHC	4 cut(s)	45, 553, 724, 1197
Bsp143I	GATC	5 cut(s)	245, 474, 994, 1084, 1185
Bsp1720I	GCTNAGC	1 cut(s)	225
BspACI	CCGC	3 cut(s)	155, 602, 1096
BspANI	GGCC	3 cut(s)	195, 269, 1052
BspCNI	CTCAG	1 cut(s)	217
BspFNI	CGCG	1 cut(s)	231
BspHI	TCATGA	1 cut(s)	1144
BspLI	GGNNCC	3 cut(s)	21, 684, 874
BspMAI	CTGCAG	2 cut(s)	1017, 1168
BspPI	GGATC	4 cut(s)	253, 1002, 1079, 1180
BspT104I	TTCGAA	1 cut(s)	1033
BspT107I	GGYRCC	1 cut(s)	872
BsrI	ACTGG	1 cut(s)	289
BssECI	CCNNGG	2 cut(s)	950, 1219
BssMI	GATC	5 cut(s)	245, 474, 994, 1084, 1185
BssT1I	CCWWGG	1 cut(s)	1219
Bst2UI	CCWGG	1 cut(s)	266
Bst4CI	ACNGT	3 cut(s)	130, 295, 1209
BstAPI	GCANNNNNTGC	1 cut(s)	352
BstBI	TTCGAA	1 cut(s)	1033
BstC8I	GCNNGC	6 cut(s)	197, 781, 977, 1100, 1164, 1197
BstDEI	CTNAG	5 cut(s)	35, 225, 277, 386, 1054
BstDSI	CCRYGG	1 cut(s)	950
BstF5I	GGATG	3 cut(s)	112, 510, 1060
BstFNI	CGCG	1 cut(s)	231
BstHHI	GCGC	3 cut(s)	231, 975, 1214
BstKTI	GATC	5 cut(s)	248, 477, 997, 1087, 1188
BstMAI	GTCTC	2 cut(s)	387, 452
BstMBI	GATC	5 cut(s)	245, 474, 994, 1084, 1185
BstMWI	GCNNNNNNNGC	4 cut(s)	352, 811, 1049, 1180
BstNI	CCWGG	1 cut(s)	266
BstNSI	RCATGY	1 cut(s)	979
BstSCI	CCNGG	5 cut(s)	43, 264, 336, 823, 1188
BstSFI	CTRYAG	3 cut(s)	484, 1013, 1164
BstUI	CGCG	1 cut(s)	231
BstV1I	GCAGC	2 cut(s)	996, 999
BstV2I	GAAGAC	1 cut(s)	350
BstX2I	RGATCY	2 cut(s)	245, 994
BstYI	RGATCY	2 cut(s)	245, 994
BsuRI	GGCC	3 cut(s)	195, 269, 1052
BtgI	CCRYGG	1 cut(s)	950
BtsCI	GGATG	3 cut(s)	112, 510, 1060
BtsIMutI	CAGTG	1 cut(s)	1214
Cac8I	GCNNGC	6 cut(s)	197, 781, 977, 1100, 1164, 1197
CaiI	CAGNNNCTG	2 cut(s)	817, 989
CciI	TCATGA	1 cut(s)	1144
CfoI	GCGC	3 cut(s)	231, 975, 1214
CseI	GACGC	2 cut(s)	344, 1119
Csp6I	GTAC	6 cut(s)	328, 440, 712, 873, 1018, 1038
CviAII	CATG	6 cut(s)	94, 242, 352, 901, 976, 1145
CviQI	GTAC	6 cut(s)	328, 440, 712, 873, 1018, 1038
DdeI	CTNAG	5 cut(s)	35, 225, 277, 386, 1054
DpnI	GATC	5 cut(s)	247, 476, 996, 1086, 1187
DpnII	GATC	5 cut(s)	245, 474, 994, 1084, 1185
DriI	GACNNNNNGTC	1 cut(s)	772
EaeI	YGGCCR	1 cut(s)	193
Eam1105I	GACNNNNNGTC	1 cut(s)	772
Ecl136II	GAGCTC	1 cut(s)	551
Eco130I	CCWWGG	1 cut(s)	1219
Eco147I	AGGCCT	1 cut(s)	1052
Eco24I	GRGCYC	2 cut(s)	45, 553
Eco53kI	GAGCTC	1 cut(s)	551
Eco57I	CTGAAG	1 cut(s)	1172
Eco88I	CYCGRG	1 cut(s)	455
EcoICRI	GAGCTC	1 cut(s)	551
EcoRII	CCWGG	1 cut(s)	264
EcoT14I	CCWWGG	1 cut(s)	1219
EcoT22I	ATGCAT	1 cut(s)	902
EcoT38I	GRGCYC	2 cut(s)	45, 553
ErhI	CCWWGG	1 cut(s)	1219
FaeI	CATG	6 cut(s)	97, 245, 355, 904, 979, 1148
FalI	AAGNNNNNCTT	2 cut(s)	1027, 1059
FaqI	GGGAC	2 cut(s)	437, 605
FatI	CATG	6 cut(s)	93, 241, 351, 900, 975, 1144
FauI	CCCGC	2 cut(s)	148, 1103
FbaI	TGATCA	1 cut(s)	474
FblI	GTMKAC	1 cut(s)	840
Fnu4HI	GCNGC	3 cut(s)	602, 1010, 1013
FokI	GGATG	3 cut(s)	119, 517, 1047
FriOI	GRGCYC	2 cut(s)	45, 553
Fsp4HI	GCNGC	3 cut(s)	602, 1010, 1013
FspBI	CTAG	3 cut(s)	362, 708, 791
GlaI	GCGC	3 cut(s)	230, 974, 1213
GluI	GCNGC	3 cut(s)	602, 1010, 1013
HaeIII	GGCC	3 cut(s)	195, 269, 1052
HapII	CCGG	4 cut(s)	45, 337, 825, 1190
HgaI	GACGC	2 cut(s)	344, 1119
HhaI	GCGC	3 cut(s)	231, 975, 1214
Hin1II	CATG	6 cut(s)	97, 245, 355, 904, 979, 1148
Hin6I	GCGC	3 cut(s)	229, 973, 1212
HinP1I	GCGC	3 cut(s)	229, 973, 1212
HpaII	CCGG	4 cut(s)	45, 337, 825, 1190
HphI	GGTGA	4 cut(s)	299, 484, 623, 938
Hpy166II	GTNNAC	1 cut(s)	841
Hpy188I	TCNGA	1 cut(s)	254
Hpy188III	TCNNGA	4 cut(s)	317, 362, 1145, 1227
Hpy8I	GTNNAC	1 cut(s)	841
HpyAV	CCTTC	5 cut(s)	1040, 1075, 1127, 1147, 1225
HpyCH4III	ACNGT	3 cut(s)	130, 295, 1209
HpyCH4V	TGCA	5 cut(s)	56, 346, 900, 1015, 1166
HpyF10VI	GCNNNNNNNGC	4 cut(s)	352, 811, 1049, 1180
HpyF3I	CTNAG	5 cut(s)	35, 225, 277, 386, 1054
Hsp92II	CATG	6 cut(s)	97, 245, 355, 904, 979, 1148
HspAI	GCGC	3 cut(s)	229, 973, 1212
KpnI	GGTACC	1 cut(s)	876
Ksp22I	TGATCA	1 cut(s)	474
Kzo9I	GATC	5 cut(s)	245, 474, 994, 1084, 1185
LmnI	GCTCC	1 cut(s)	1192
Lsp1109I	GCAGC	2 cut(s)	996, 999
LweI	GCATC	1 cut(s)	495
MaeI	CTAG	3 cut(s)	362, 708, 791
MaeIII	GTNAC	2 cut(s)	169, 647
MalI	GATC	5 cut(s)	247, 476, 996, 1086, 1187
MboI	GATC	5 cut(s)	245, 474, 994, 1084, 1185
MboII	GAAGA	2 cut(s)	305, 350
MflI	RGATCY	2 cut(s)	245, 994
MhlI	GDGCHC	4 cut(s)	45, 553, 724, 1197
MlsI	TGGCCA	1 cut(s)	195
MluCI	AATT	4 cut(s)	70, 99, 607, 936
MluNI	TGGCCA	1 cut(s)	195
MmeI	TCCRAC	1 cut(s)	217
MnlI	CCTC	7 cut(s)	145, 318, 446, 495, 876, 880, 1042
Mox20I	TGGCCA	1 cut(s)	195
Mph1103I	ATGCAT	1 cut(s)	902
MscI	TGGCCA	1 cut(s)	195
MseI	TTAA	8 cut(s)	303, 432, 522, 639, 924, 939, 1137, 1179
MslI	CAYNNNNRTG	1 cut(s)	516
Msp20I	TGGCCA	1 cut(s)	195
MspI	CCGG	4 cut(s)	45, 337, 825, 1190
MspR9I	CCNGG	5 cut(s)	45, 266, 338, 825, 1190
MvaI	CCWGG	1 cut(s)	266
MvnI	CGCG	1 cut(s)	231
MwoI	GCNNNNNNNGC	4 cut(s)	352, 811, 1049, 1180
NciI	CCSGG	4 cut(s)	45, 338, 825, 1190
NdeII	GATC	5 cut(s)	245, 474, 994, 1084, 1185
NlaIII	CATG	6 cut(s)	97, 245, 355, 904, 979, 1148
NlaIV	GGNNCC	3 cut(s)	21, 684, 874
NmuCI	GTSAC	2 cut(s)	169, 647
NsiI	ATGCAT	1 cut(s)	902
NspI	RCATGY	1 cut(s)	979
NspV	TTCGAA	1 cut(s)	1033
PaeI	GCATGC	1 cut(s)	979
PagI	TCATGA	1 cut(s)	1144
PceI	AGGCCT	1 cut(s)	1052
PfoI	TCCNGGA	2 cut(s)	823, 1188
PkrI	GCNGC	3 cut(s)	603, 1011, 1014
Psp124BI	GAGCTC	1 cut(s)	553
Psp6I	CCWGG	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	3 cut(s)	21, 684, 874
PsrI	GAACNNNNNNTAC	3 cut(s)	35, 896, 928
PstI	CTGCAG	2 cut(s)	1017, 1168
PstNI	CAGNNNCTG	2 cut(s)	817, 989
PsuI	RGATCY	2 cut(s)	245, 994
RsaI	GTAC	6 cut(s)	329, 441, 713, 874, 1019, 1039
RsaNI	GTAC	6 cut(s)	328, 440, 712, 873, 1018, 1038
RseI	CAYNNNNRTG	1 cut(s)	516
SacI	GAGCTC	1 cut(s)	553
SaqAI	TTAA	8 cut(s)	303, 432, 522, 639, 924, 939, 1137, 1179
SatI	GCNGC	3 cut(s)	602, 1010, 1013
Sau3AI	GATC	5 cut(s)	245, 474, 994, 1084, 1185
ScaI	AGTACT	1 cut(s)	1019
ScrFI	CCNGG	5 cut(s)	45, 266, 338, 825, 1190
SduI	GDGCHC	4 cut(s)	45, 553, 724, 1197
SfaNI	GCATC	1 cut(s)	495
SfcI	CTRYAG	3 cut(s)	484, 1013, 1164
SfuI	TTCGAA	1 cut(s)	1033
SmiMI	CAYNNNNRTG	1 cut(s)	516
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
SphI	GCATGC	1 cut(s)	979
Sse9I	AATT	4 cut(s)	70, 99, 607, 936
SseBI	AGGCCT	1 cut(s)	1052
SsiI	CCGC	3 cut(s)	155, 602, 1096
SspMI	CTAG	3 cut(s)	362, 708, 791
SstI	GAGCTC	1 cut(s)	553
StuI	AGGCCT	1 cut(s)	1052
StyD4I	CCNGG	5 cut(s)	43, 264, 336, 823, 1188
StyI	CCWWGG	1 cut(s)	1219
TaaI	ACNGT	3 cut(s)	130, 295, 1209
TaqI	TCGA	4 cut(s)	66, 404, 718, 1033
TasI	AATT	4 cut(s)	70, 99, 607, 936
TatI	WGTACW	2 cut(s)	1017, 1037
TauI	GCSGC	1 cut(s)	604
Tru1I	TTAA	8 cut(s)	303, 432, 522, 639, 924, 939, 1137, 1179
Tru9I	TTAA	8 cut(s)	303, 432, 522, 639, 924, 939, 1137, 1179
TscAI	CASTG	1 cut(s)	1214
TseFI	GTSAC	2 cut(s)	169, 647
TseI	GCWGC	2 cut(s)	1009, 1012
Tsp45I	GTSAC	2 cut(s)	169, 647
TspDTI	ATGAA	6 cut(s)	101, 110, 509, 554, 917, 1161
TspGWI	ACGGA	1 cut(s)	164
TspRI	CASTG	1 cut(s)	1214
XapI	RAATTY	1 cut(s)	607
XbaI	TCTAGA	1 cut(s)	361
XceI	RCATGY	1 cut(s)	979
XmiI	GTMKAC	1 cut(s)	840
XspI	CTAG	3 cut(s)	362, 708, 791
ZrmI	AGTACT	1 cut(s)	1019
Zsp2I	ATGCAT	1 cut(s)	902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.