Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0028953

Physical Location & Seq

Genomic Coordinates Reverse (-)

372862 .. 374457

Gene Structure 1596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G003800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGATATCAATGGCTAGGCTTCTTTTCTTTGACACAGAACAGATCATGGCAGTACTAGAAAAGCAAAGTGGCAAAATATGTTATATGTATGACTTACAGTTTATATGGGTGTCAAAGGACTATGATTTTGCTCCTATAAGGCTTCTTTTGACAATTGGGATGTTCTGCAGTCCTCTCCTGTGGGTTTACTATTTGGGGTTTCTACAGTCCTCTCATGTGGGTCTATTGTGTTGGTCTCTAATTGCGGTTCTCGTCGGAGGTATTTGTGTTAGGTTTTGTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051726 GO:0065007 GO:0071704 GO:0097472 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

95

Amino Acids

10.89

Weight (kDa)

6.51

Isoelectric Point (pI)

54.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028953)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G003800_v2.0.a1 Prupe.2G122800_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	245
AfaI	GTAC	1 cut(s)	54
Alw26I	GTCTC	1 cut(s)	240
ArsI	GACNNNNNNTTYG	2 cut(s)	110, 142
BcoDI	GTCTC	1 cut(s)	240
BfaI	CTAG	2 cut(s)	15, 56
BfmI	CTRYAG	2 cut(s)	166, 203
BmcAI	AGTACT	1 cut(s)	54
BsaI	GGTCTC	1 cut(s)	240
BseGI	GGATG	1 cut(s)	165
BsmAI	GTCTC	1 cut(s)	240
Bso31I	GGTCTC	1 cut(s)	240
Bsp143I	GATC	1 cut(s)	42
BspACI	CCGC	1 cut(s)	245
BspMAI	CTGCAG	1 cut(s)	170
BspTNI	GGTCTC	1 cut(s)	240
BssMI	GATC	1 cut(s)	42
Bst4CI	ACNGT	2 cut(s)	99, 207
BstF5I	GGATG	1 cut(s)	165
BstKTI	GATC	1 cut(s)	45
BstMAI	GTCTC	1 cut(s)	240
BstMBI	GATC	1 cut(s)	42
BstSFI	CTRYAG	2 cut(s)	166, 203
BtsCI	GGATG	1 cut(s)	165
Csp6I	GTAC	1 cut(s)	53
CviAII	CATG	2 cut(s)	46, 215
CviJI	RGCY	3 cut(s)	14, 19, 142
CviKI_1	RGCY	3 cut(s)	14, 19, 142
CviQI	GTAC	1 cut(s)	53
DpnI	GATC	1 cut(s)	44
DpnII	GATC	1 cut(s)	42
Eco31I	GGTCTC	1 cut(s)	240
Eco32I	GATATC	1 cut(s)	6
EcoRV	GATATC	1 cut(s)	6
FaeI	CATG	2 cut(s)	49, 218
FatI	CATG	2 cut(s)	45, 214
FokI	GGATG	1 cut(s)	172
FspBI	CTAG	2 cut(s)	15, 56
Hin1II	CATG	2 cut(s)	49, 218
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	1 cut(s)	257
Hpy8I	GTNNAC	1 cut(s)	187
Hpy99I	CGWCG	1 cut(s)	257
HpyCH4III	ACNGT	2 cut(s)	99, 207
HpyCH4V	TGCA	1 cut(s)	168
Hsp92II	CATG	2 cut(s)	49, 218
Kzo9I	GATC	1 cut(s)	42
LmnI	GCTCC	1 cut(s)	136
LpnPI	CCDG	1 cut(s)	191
MaeI	CTAG	2 cut(s)	15, 56
MalI	GATC	1 cut(s)	44
MboI	GATC	1 cut(s)	42
MfeI	CAATTG	1 cut(s)	153
MluCI	AATT	2 cut(s)	153, 240
MmeI	TCCRAC	1 cut(s)	235
MnlI	CCTC	3 cut(s)	183, 220, 251
MunI	CAATTG	1 cut(s)	153
NdeII	GATC	1 cut(s)	42
NlaIII	CATG	2 cut(s)	49, 218
PstI	CTGCAG	1 cut(s)	170
RsaI	GTAC	1 cut(s)	54
RsaNI	GTAC	1 cut(s)	53
Sau3AI	GATC	1 cut(s)	42
ScaI	AGTACT	1 cut(s)	54
SetI	ASST	2 cut(s)	262, 275
SfcI	CTRYAG	2 cut(s)	166, 203
SgeI	CNNG	6 cut(s)	27, 58, 68, 190, 227, 263
Sse9I	AATT	2 cut(s)	153, 240
SsiI	CCGC	1 cut(s)	245
SspMI	CTAG	2 cut(s)	15, 56
TaaI	ACNGT	2 cut(s)	99, 207
TasI	AATT	2 cut(s)	153, 240
TatI	WGTACW	1 cut(s)	52
XspI	CTAG	2 cut(s)	15, 56
ZrmI	AGTACT	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.