Prupe.1G005400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0016583
Physical Location & Seq
Forward (+)
469738 .. 470644
907 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G005400.1

Sequence Viewer

Length: 381 bp
ATGGATATTGATCTCCTCTTGATTGGTGGGGGGTGGATTAATTGCTATCGTATCGGTTCAAATTTTATGGCAAAAGCTGGAAAATCAGTTCCTCAACTCTTAATCTTAATAAGATCACAATTATCTCTGTTGCTATTTCATACTGGGCTTCTCTTGCTGCTTGTTGTTCCTCACTTTGCTCGTCCTACACCATCAGAGTTTAATAATTCAAAGTCGTTAACCATGGCGGCTGGCTCATCATCTTCAACAGCTACACAGCTCCTCCAATCTTCCATGGACTTGCATCCAAAACAGGCTAAGAAGAGCGCCAAGAATAATCAACAATTTGAAGCTTCTGCGCATGAAGTCCCGAGCGGTCCAAATCCTGAATCGAACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

13.6

Weight (kDa)

9.52

Isoelectric Point (pI)

45.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016583)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24770 AT4G13195
fragaria_vesca FvH4_2g19210
prunus_persica Prupe.1G005400_v2.0.a1 Prupe.8G204100_v2.0.a1
pyrus_communis pycom05g16310
rosa_chinensis RchiOBHm_Chr6g0285001
rosa_laevigata RLG00000012690
rosa_roxburghii Rroxscaffold_7G00183850
rosa_samantha Rh6AG281600 Rh6BG282200 Rh6CG283900 Rh6DG277000
rosa_wichuraiana Rw6G024190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 339
AccBSI CCGCTC 1 cut(s) 354
AciI CCGC 2 cut(s) 227, 354
AcsI RAATTY 1 cut(s) 61
AgsI TTSAA 4 cut(s) 60, 210, 246, 329
AloI GAACNNNNNNTCC 2 cut(s) 72, 104
AluBI AGCT 4 cut(s) 77, 251, 259, 332
AluI AGCT 4 cut(s) 77, 251, 259, 332
Ama87I CYCGRG 1 cut(s) 349
ApeKI GCWGC 1 cut(s) 157
ApoI RAATTY 1 cut(s) 61
AseI ATTAAT 1 cut(s) 39
AspLEI GCGC 2 cut(s) 308, 340
AspS9I GGNCC 1 cut(s) 356
AvaI CYCGRG 1 cut(s) 349
AvaII GGWCC 1 cut(s) 356
BbvI GCAGC 1 cut(s) 144
BccI CCATC 1 cut(s) 199
BfoI RGCGCY 1 cut(s) 309
BisI GCNGC 2 cut(s) 158, 228
BlsI GCNGC 2 cut(s) 159, 229
Bme18I GGWCC 1 cut(s) 356
BmeT110I CYCGRG 1 cut(s) 349
BmgT120I GGNCC 1 cut(s) 356
BmrI ACTGGG 1 cut(s) 153
BmsI GCATC 1 cut(s) 292
BmuI ACTGGG 1 cut(s) 153
BsaBI GATNNNNATC 1 cut(s) 9
BsaJI CCNNGG 2 cut(s) 222, 273
BsaXI ACNNNNNCTCC 2 cut(s) 246, 276
Bse1I ACTGG 1 cut(s) 148
Bse8I GATNNNNATC 1 cut(s) 9
BseDI CCNNGG 2 cut(s) 222, 273
BseGI GGATG 1 cut(s) 283
BseJI GATNNNNATC 1 cut(s) 9
BseNI ACTGG 1 cut(s) 148
BseRI GAGGAG 2 cut(s) 5, 251
BseXI GCAGC 1 cut(s) 144
BsiHKCI CYCGRG 1 cut(s) 349
BslFI GGGAC 1 cut(s) 332
BsmFI GGGAC 1 cut(s) 332
BsoBI CYCGRG 1 cut(s) 349
Bsp143I GATC 2 cut(s) 10, 113
Bsp19I CCATGG 2 cut(s) 222, 273
BspACI CCGC 2 cut(s) 227, 354
BspQI GCTCTTC 1 cut(s) 296
BsrBI CCGCTC 1 cut(s) 354
BsrI ACTGG 1 cut(s) 148
BssECI CCNNGG 2 cut(s) 222, 273
BssMI GATC 2 cut(s) 10, 113
BssT1I CCWWGG 2 cut(s) 222, 273
Bst6I CTCTTC 1 cut(s) 296
BstC8I GCNNGC 1 cut(s) 232
BstDEI CTNAG 1 cut(s) 297
BstDSI CCRYGG 2 cut(s) 222, 273
BstF5I GGATG 1 cut(s) 283
BstH2I RGCGCY 1 cut(s) 309
BstHHI GCGC 2 cut(s) 308, 340
BstKTI GATC 2 cut(s) 13, 116
BstMBI GATC 2 cut(s) 10, 113
BstMWI GCNNNNNNNGC 1 cut(s) 154
BstV1I GCAGC 1 cut(s) 144
BtgI CCRYGG 2 cut(s) 222, 273
BtsCI GGATG 1 cut(s) 283
Cac8I GCNNGC 1 cut(s) 232
CfoI GCGC 2 cut(s) 308, 340
Cfr13I GGNCC 1 cut(s) 356
CviAII CATG 3 cut(s) 223, 274, 341
CviJI RGCY 8 cut(s) 77, 148, 230, 234, 251, 259, 296, 332
CviKI_1 RGCY 8 cut(s) 77, 148, 230, 234, 251, 259, 296, 332
DdeI CTNAG 1 cut(s) 297
DpnI GATC 2 cut(s) 12, 115
DpnII GATC 2 cut(s) 10, 113
Eam1104I CTCTTC 1 cut(s) 296
EarI CTCTTC 1 cut(s) 296
Eco130I CCWWGG 2 cut(s) 222, 273
Eco47I GGWCC 1 cut(s) 356
Eco88I CYCGRG 1 cut(s) 349
EcoT14I CCWWGG 2 cut(s) 222, 273
ErhI CCWWGG 2 cut(s) 222, 273
FaeI CATG 3 cut(s) 226, 277, 344
FaiI YATR 5 cut(s) 68, 141, 224, 275, 342
FaqI GGGAC 1 cut(s) 332
FatI CATG 3 cut(s) 222, 273, 340
Fnu4HI GCNGC 2 cut(s) 158, 228
FokI GGATG 1 cut(s) 270
Fsp4HI GCNGC 2 cut(s) 158, 228
FspI TGCGCA 1 cut(s) 339
GlaI GCGC 2 cut(s) 307, 339
GluI GCNGC 2 cut(s) 158, 228
HaeII RGCGCY 1 cut(s) 309
HhaI GCGC 2 cut(s) 308, 340
Hin1II CATG 3 cut(s) 226, 277, 344
Hin6I GCGC 2 cut(s) 306, 338
HinP1I GCGC 2 cut(s) 306, 338
HincII GTYRAC 1 cut(s) 219
HindII GTYRAC 1 cut(s) 219
HindIII AAGCTT 1 cut(s) 330
HinfI GANTC 1 cut(s) 368
HpaI GTTAAC 1 cut(s) 219
Hpy166II GTNNAC 1 cut(s) 219
Hpy188I TCNGA 1 cut(s) 196
Hpy188III TCNNGA 3 cut(s) 19, 349, 365
Hpy8I GTNNAC 1 cut(s) 219
HpyCH4V TGCA 1 cut(s) 283
HpyF10VI GCNNNNNNNGC 1 cut(s) 154
HpyF3I CTNAG 1 cut(s) 297
Hsp92II CATG 3 cut(s) 226, 277, 344
HspAI GCGC 2 cut(s) 306, 338
KspAI GTTAAC 1 cut(s) 219
Kzo9I GATC 2 cut(s) 10, 113
LguI GCTCTTC 1 cut(s) 296
LmnI GCTCC 1 cut(s) 264
LpnPI CCDG 4 cut(s) 63, 129, 216, 278
Lsp1109I GCAGC 1 cut(s) 144
LweI GCATC 1 cut(s) 292
MalI GATC 2 cut(s) 12, 115
MbiI CCGCTC 1 cut(s) 354
MboI GATC 2 cut(s) 10, 113
MboII GAAGA 3 cut(s) 234, 261, 313
MluCI AATT 5 cut(s) 40, 61, 119, 205, 323
MnlI CCTC 4 cut(s) 26, 102, 180, 272
MseI TTAA 5 cut(s) 39, 101, 107, 201, 218
MwoI GCNNNNNNNGC 1 cut(s) 154
NcoI CCATGG 2 cut(s) 222, 273
NdeII GATC 2 cut(s) 10, 113
NlaIII CATG 3 cut(s) 226, 277, 344
NsbI TGCGCA 1 cut(s) 339
PciSI GCTCTTC 1 cut(s) 296
PfeI GAWTC 1 cut(s) 368
PkrI GCNGC 2 cut(s) 159, 229
PshBI ATTAAT 1 cut(s) 39
PspPI GGNCC 1 cut(s) 356
SapI GCTCTTC 1 cut(s) 296
SaqAI TTAA 5 cut(s) 39, 101, 107, 201, 218
SatI GCNGC 2 cut(s) 158, 228
Sau3AI GATC 2 cut(s) 10, 113
Sau96I GGNCC 1 cut(s) 356
SetI ASST 4 cut(s) 79, 253, 261, 334
SfaNI GCATC 1 cut(s) 292
SinI GGWCC 1 cut(s) 356
Sse9I AATT 5 cut(s) 40, 61, 119, 205, 323
SsiI CCGC 2 cut(s) 227, 354
StyI CCWWGG 2 cut(s) 222, 273
TaqI TCGA 1 cut(s) 371
TasI AATT 5 cut(s) 40, 61, 119, 205, 323
TauI GCSGC 1 cut(s) 230
TfiI GAWTC 1 cut(s) 368
Tru1I TTAA 5 cut(s) 39, 101, 107, 201, 218
Tru9I TTAA 5 cut(s) 39, 101, 107, 201, 218
TseI GCWGC 1 cut(s) 157
TspDTI ATGAA 2 cut(s) 128, 357
VpaK11BI GGWCC 1 cut(s) 356
VspI ATTAAT 1 cut(s) 39
XapI RAATTY 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.