Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0016583

Physical Location & Seq

Genomic Coordinates Reverse (-)

19629775 .. 19630173

Gene Structure 399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g16310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGATATTGAACCCTTGTGGGCTCTTGGGGGGTGGTTTCTTCTTCCAAATTGCATGGCAGCTGCACCTAAAACATCATCATCACCGCCGTCATCACCATCCATCTCTGAATTCCCCACCAAAGTAAACCCTAATTTGCTTCTCTTTCTTGCCCTATTTTTTTTCATTTTTCTTCTTCTTGTCAGTCCATCATCAATGGCCTCCTCCTCCTCCTCCGCATCACCAGTCACAAGCAAAAGGCTTCTCTCCGAGCCCTCATCAAAGTCTACCACAAATTTCCACCCAAAAAACACCAAAAACCCTACAACTACAACGTCGTCTTCAAATCCGAGTGCCAGAAGAGAGTTTGGAGCTGAAGCTCATGAAGTTCCTAGCGGACCAAACCCTATATCAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0007154 GO:0007267 GO:0007275 GO:0008150 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010065 GO:0010067 GO:0010087 GO:0010089 GO:0010154 GO:0010223 GO:0010346 GO:0022414 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0033612 GO:0045165 GO:0045168 GO:0048046 GO:0048316 GO:0048367 GO:0048507 GO:0048508 GO:0048532 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0061458 GO:0090506 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

133

Amino Acids

14.03

Weight (kDa)

8.98

Isoelectric Point (pI)

72.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
New_glue	PF21827	46 - 112	8.1e-06	New glue protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24770 AT4G13195
fragaria_vesca	FvH4_2g19210
prunus_persica	Prupe.1G005400_v2.0.a1 Prupe.8G204100_v2.0.a1
pyrus_communis	pycom05g16310
rosa_chinensis	RchiOBHm_Chr6g0285001
rosa_laevigata	RLG00000012690
rosa_roxburghii	Rroxscaffold_7G00183850
rosa_samantha	Rh6AG281600 Rh6BG282200 Rh6CG283900 Rh6DG277000
rosa_wichuraiana	Rw6G024190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	266
AciI	CCGC	3 cut(s)	86, 216, 375
AcsI	RAATTY	2 cut(s)	110, 274
AcuI	CTGAAG	1 cut(s)	375
AgsI	TTSAA	2 cut(s)	11, 324
AluBI	AGCT	3 cut(s)	62, 353, 359
AluI	AGCT	3 cut(s)	62, 353, 359
AoxI	GGCC	1 cut(s)	198
ApeKI	GCWGC	2 cut(s)	59, 62
ApoI	RAATTY	2 cut(s)	110, 274
AspS9I	GGNCC	1 cut(s)	377
AsuHPI	GGTGA	3 cut(s)	75, 87, 213
AvaII	GGWCC	1 cut(s)	377
BanII	GRGCYC	2 cut(s)	25, 255
BbsI	GAAGAC	1 cut(s)	312
BbvI	GCAGC	2 cut(s)	49, 71
BccI	CCATC	3 cut(s)	106, 110, 196
BceAI	ACGGC	1 cut(s)	73
BfaI	CTAG	2 cut(s)	372, 397
BisI	GCNGC	2 cut(s)	60, 63
BlsI	GCNGC	2 cut(s)	61, 64
Bme18I	GGWCC	1 cut(s)	377
BmgT120I	GGNCC	1 cut(s)	377
BmsI	GCATC	1 cut(s)	227
BpiI	GAAGAC	1 cut(s)	312
Bse1I	ACTGG	1 cut(s)	224
BseGI	GGATG	1 cut(s)	98
BseNI	ACTGG	1 cut(s)	224
BseRI	GAGGAG	4 cut(s)	193, 196, 199, 202
BseXI	GCAGC	2 cut(s)	49, 71
BsgI	GTGCAG	1 cut(s)	48
BshFI	GGCC	1 cut(s)	200
BsnI	GGCC	1 cut(s)	200
Bsp1286I	GDGCHC	2 cut(s)	25, 255
BspACI	CCGC	3 cut(s)	86, 216, 375
BspANI	GGCC	1 cut(s)	200
BspHI	TCATGA	1 cut(s)	361
BsrI	ACTGG	1 cut(s)	224
Bst6I	CTCTTC	1 cut(s)	334
BstF5I	GGATG	1 cut(s)	98
BstV1I	GCAGC	2 cut(s)	49, 71
BstV2I	GAAGAC	1 cut(s)	312
BsuRI	GGCC	1 cut(s)	200
BtsCI	GGATG	1 cut(s)	98
CciI	TCATGA	1 cut(s)	361
Cfr13I	GGNCC	1 cut(s)	377
CviAII	CATG	2 cut(s)	55, 362
CviJI	RGCY	7 cut(s)	23, 62, 200, 241, 253, 353, 359
CviKI_1	RGCY	7 cut(s)	23, 62, 200, 241, 253, 353, 359
Eam1104I	CTCTTC	1 cut(s)	334
EarI	CTCTTC	1 cut(s)	334
Eco24I	GRGCYC	2 cut(s)	25, 255
Eco47I	GGWCC	1 cut(s)	377
Eco57I	CTGAAG	1 cut(s)	375
EcoRI	GAATTC	1 cut(s)	110
EcoT38I	GRGCYC	2 cut(s)	25, 255
FaeI	CATG	2 cut(s)	58, 365
FaiI	YATR	3 cut(s)	56, 363, 389
FatI	CATG	2 cut(s)	54, 361
FblI	GTMKAC	1 cut(s)	266
Fnu4HI	GCNGC	2 cut(s)	60, 63
FokI	GGATG	1 cut(s)	85
FriOI	GRGCYC	2 cut(s)	25, 255
Fsp4HI	GCNGC	2 cut(s)	60, 63
FspBI	CTAG	2 cut(s)	372, 397
GluI	GCNGC	2 cut(s)	60, 63
HaeIII	GGCC	1 cut(s)	200
Hin1II	CATG	2 cut(s)	58, 365
HphI	GGTGA	3 cut(s)	75, 87, 213
Hpy166II	GTNNAC	2 cut(s)	127, 267
Hpy188I	TCNGA	3 cut(s)	109, 250, 330
Hpy188III	TCNNGA	1 cut(s)	362
Hpy8I	GTNNAC	2 cut(s)	127, 267
Hpy99I	CGWCG	1 cut(s)	319
HpyCH4IV	ACGT	1 cut(s)	314
HpyCH4V	TGCA	2 cut(s)	54, 65
HpySE526I	ACGT	1 cut(s)	314
Hsp92II	CATG	2 cut(s)	58, 365
LmnI	GCTCC	1 cut(s)	350
LpnPI	CCDG	2 cut(s)	237, 349
Lsp1109I	GCAGC	2 cut(s)	49, 71
LweI	GCATC	1 cut(s)	227
MaeI	CTAG	2 cut(s)	372, 397
MaeII	ACGT	1 cut(s)	314
MaeIII	GTNAC	1 cut(s)	226
MboII	GAAGA	6 cut(s)	32, 35, 164, 167, 312, 351
MhlI	GDGCHC	2 cut(s)	25, 255
MluCI	AATT	4 cut(s)	49, 110, 133, 274
MnlI	CCTC	6 cut(s)	211, 214, 217, 220, 223, 265
MspA1I	CMGCKG	1 cut(s)	62
NlaIII	CATG	2 cut(s)	58, 365
NmuCI	GTSAC	1 cut(s)	226
PagI	TCATGA	1 cut(s)	361
PkrI	GCNGC	2 cut(s)	61, 64
PspPI	GGNCC	1 cut(s)	377
PvuII	CAGCTG	1 cut(s)	62
SatI	GCNGC	2 cut(s)	60, 63
Sau96I	GGNCC	1 cut(s)	377
SduI	GDGCHC	2 cut(s)	25, 255
SetI	ASST	5 cut(s)	64, 70, 317, 355, 361
SfaNI	GCATC	1 cut(s)	227
SinI	GGWCC	1 cut(s)	377
Sse9I	AATT	4 cut(s)	49, 110, 133, 274
SsiI	CCGC	3 cut(s)	86, 216, 375
SspMI	CTAG	2 cut(s)	372, 397
TaiI	ACGT	1 cut(s)	317
TasI	AATT	4 cut(s)	49, 110, 133, 274
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	2 cut(s)	59, 62
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	2 cut(s)	154, 378
VpaK11BI	GGWCC	1 cut(s)	377
XapI	RAATTY	2 cut(s)	110, 274
XmiI	GTMKAC	1 cut(s)	266
XspI	CTAG	2 cut(s)	372, 397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.