Prupe.1G014200_v2.0.a1

Retrotransposon gag protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0022460
Physical Location & Seq
Forward (+)
1047803 .. 1049135
1333 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G014200.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 699 bp
ATGTCGAGTGTATGGCTCCAACTACGGTTGGTAAGACAAACATGCCAACAATGGTCTATGAACGGATTGTTCTTATGCTGGAAACGATTCAGACTCATGGATCGTCTTGCAAAACTAGAAGCATCCAAGCACCGTTATGTGGATAAGTTTGACGTGATCAATATTTGTTCAAAGGAGTCTCAAGAACATCAATCCATTGATGATTGGAAACAAGGAGAAAATTTTCAAGACAATACCATGGAGATTCAAGTAGAAGCTGCTGGTCAAGGTGAATTTAAGGAAGAAGTGTGTAAGCCTGAACTTCTTGCTAGTGTTGTCGACATTAAGGTTGAATCTGGTGAGATTTTTCATCCTATGATGACACTAGTAAGTTGCCCATTGATCGAATCACCATTCAGCAAAGGAGGGAAAAGTCTAACTGATCAGTCAGCATTCCTACAACTCATTGATTTTATCAGATTCGGGAGGGAGGCAGAGGATGAGTCTATATGTTTGCACGCTGATTCCGACTTCCAGGAATGTTACTACAATTCTAACTTACGGGAGTCGAGTTCTTCTCAGCTAGGGAGAATTGATGAGGACATCTTTGTCAAACCCATTAGGGTTTACAAACGAAAAAGATGGAAGAGGGAATTATTAATTAGTTTCCTAATTTATTTGATAGTTCCTAGGTTCTCTAAGTTTTCCAGATTTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag zf-CCHC

Protein Analysis

233

Amino Acids

27.28

Weight (kDa)

6.25

Isoelectric Point (pI)

53.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022460)

Species Orthologous Gene IDs
prunus_persica Prupe.1G014200_v2.0.a1 Prupe.7G022700_v2.0.a1 Prupe.7G022700_v2.0.a1 Prupe.8G057000_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 587
AccI GTMKAC 1 cut(s) 318
AclWI GGATC 1 cut(s) 108
AcsI RAATTY 2 cut(s) 220, 272
AfiI CCNNNNNNNGG 1 cut(s) 139
AgsI TTSAA 4 cut(s) 171, 227, 248, 332
AhlI ACTAGT 1 cut(s) 364
AjiI CACGTC 1 cut(s) 154
AjnI CCWGG 1 cut(s) 513
AluBI AGCT 2 cut(s) 257, 562
AluI AGCT 2 cut(s) 257, 562
Alw26I GTCTC 1 cut(s) 183
AlwI GGATC 1 cut(s) 108
ApeKI GCWGC 1 cut(s) 257
ApoI RAATTY 2 cut(s) 220, 272
AseI ATTAAT 1 cut(s) 638
Asp700I GAANNNNTTC 2 cut(s) 86, 222
AspA2I CCTAGG 1 cut(s) 668
AsuHPI GGTGA 3 cut(s) 281, 350, 381
AvrII CCTAGG 1 cut(s) 668
BbvI GCAGC 1 cut(s) 244
BccI CCATC 1 cut(s) 615
BciT130I CCWGG 1 cut(s) 515
BclI TGATCA 2 cut(s) 156, 421
BcoDI GTCTC 1 cut(s) 183
BcuI ACTAGT 1 cut(s) 364
BfaI CTAG 5 cut(s) 116, 309, 365, 563, 669
BisI GCNGC 1 cut(s) 258
BlnI CCTAGG 1 cut(s) 668
BlsI GCNGC 1 cut(s) 259
Bme1390I CCNGG 1 cut(s) 515
BmgBI CACGTC 1 cut(s) 154
BmiI GGNNCC 1 cut(s) 17
BmrFI CCNGG 1 cut(s) 515
BmsI GCATC 1 cut(s) 131
BplI GAGNNNNNCTC 2 cut(s) 541, 573
BpuEI CTTGAG 1 cut(s) 165
BsaJI CCNNGG 2 cut(s) 237, 668
Bsc4I CCNNNNNNNGG 1 cut(s) 139
BseBI CCWGG 1 cut(s) 515
BseDI CCNNGG 2 cut(s) 237, 668
BseGI GGATG 3 cut(s) 122, 349, 484
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMII CTCAG 1 cut(s) 572
BseXI GCAGC 1 cut(s) 244
BslI CCNNNNNNNGG 1 cut(s) 139
BsmAI GTCTC 1 cut(s) 183
BsmI GAATGC 1 cut(s) 431
Bsp143I GATC 4 cut(s) 100, 156, 381, 421
Bsp19I CCATGG 1 cut(s) 237
BspCNI CTCAG 1 cut(s) 571
BspLI GGNNCC 1 cut(s) 17
BspPI GGATC 1 cut(s) 108
BssECI CCNNGG 2 cut(s) 237, 668
BssMI GATC 4 cut(s) 100, 156, 381, 421
BssT1I CCWWGG 2 cut(s) 237, 668
Bst2UI CCWGG 1 cut(s) 515
Bst4CI ACNGT 2 cut(s) 27, 134
Bst6I CTCTTC 1 cut(s) 620
BstC8I GCNNGC 1 cut(s) 498
BstDEI CTNAG 2 cut(s) 558, 678
BstDSI CCRYGG 1 cut(s) 237
BstF5I GGATG 3 cut(s) 122, 349, 484
BstKTI GATC 4 cut(s) 103, 159, 384, 424
BstMAI GTCTC 1 cut(s) 183
BstMBI GATC 4 cut(s) 100, 156, 381, 421
BstNI CCWGG 1 cut(s) 515
BstNSI RCATGY 1 cut(s) 45
BstSCI CCNGG 1 cut(s) 513
BstV1I GCAGC 1 cut(s) 244
BtgI CCRYGG 1 cut(s) 237
BtrI CACGTC 1 cut(s) 154
BtsCI GGATG 3 cut(s) 122, 349, 484
Cac8I GCNNGC 1 cut(s) 498
CviAII CATG 3 cut(s) 42, 97, 238
CviJI RGCY 4 cut(s) 16, 257, 295, 562
CviKI_1 RGCY 4 cut(s) 16, 257, 295, 562
DdeI CTNAG 2 cut(s) 558, 678
DpnI GATC 4 cut(s) 102, 158, 383, 423
DpnII GATC 4 cut(s) 100, 156, 381, 421
DrdI GACNNNNNNGTC 1 cut(s) 587
DseDI GACNNNNNNGTC 1 cut(s) 587
Eam1104I CTCTTC 1 cut(s) 620
EarI CTCTTC 1 cut(s) 620
Eco130I CCWWGG 2 cut(s) 237, 668
EcoRII CCWGG 1 cut(s) 513
EcoT14I CCWWGG 2 cut(s) 237, 668
ErhI CCWWGG 2 cut(s) 237, 668
FaeI CATG 3 cut(s) 45, 100, 241
FatI CATG 3 cut(s) 41, 96, 237
FbaI TGATCA 2 cut(s) 156, 421
FblI GTMKAC 1 cut(s) 318
Fnu4HI GCNGC 1 cut(s) 258
FokI GGATG 3 cut(s) 109, 336, 491
Fsp4HI GCNGC 1 cut(s) 258
FspBI CTAG 5 cut(s) 116, 309, 365, 563, 669
GluI GCNGC 1 cut(s) 258
Hin1II CATG 3 cut(s) 45, 100, 241
HincII GTYRAC 1 cut(s) 319
HindII GTYRAC 1 cut(s) 319
HphI GGTGA 3 cut(s) 281, 350, 381
Hpy166II GTNNAC 2 cut(s) 319, 607
Hpy188I TCNGA 3 cut(s) 92, 458, 508
Hpy188III TCNNGA 4 cut(s) 182, 227, 463, 687
Hpy8I GTNNAC 2 cut(s) 319, 607
HpyCH4III ACNGT 2 cut(s) 27, 134
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 2 cut(s) 110, 496
HpyF3I CTNAG 2 cut(s) 558, 678
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 3 cut(s) 45, 100, 241
Ksp22I TGATCA 2 cut(s) 156, 421
Kzo9I GATC 4 cut(s) 100, 156, 381, 421
LmnI GCTCC 1 cut(s) 21
LpnPI CCDG 6 cut(s) 64, 246, 309, 321, 500, 527
Lsp1109I GCAGC 1 cut(s) 244
LweI GCATC 1 cut(s) 131
MaeI CTAG 5 cut(s) 116, 309, 365, 563, 669
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 521
MalI GATC 4 cut(s) 102, 158, 383, 423
MboI GATC 4 cut(s) 100, 156, 381, 421
MboII GAAGA 3 cut(s) 293, 546, 637
MluCI AATT 7 cut(s) 220, 272, 529, 570, 632, 639, 651
MlyI GAGTC 4 cut(s) 87, 185, 491, 554
MmeI TCCRAC 2 cut(s) 43, 531
MnlI CCTC 6 cut(s) 398, 459, 463, 469, 571, 621
MroXI GAANNNNTTC 2 cut(s) 86, 222
MseI TTAA 3 cut(s) 276, 324, 638
MslI CAYNNNNRTG 1 cut(s) 135
MspR9I CCNGG 1 cut(s) 515
Mva1269I GAATGC 1 cut(s) 431
MvaI CCWGG 1 cut(s) 515
NcoI CCATGG 1 cut(s) 237
NdeII GATC 4 cut(s) 100, 156, 381, 421
NlaIII CATG 3 cut(s) 45, 100, 241
NlaIV GGNNCC 1 cut(s) 17
NspI RCATGY 1 cut(s) 45
PcsI WCGNNNNNNNCGW 1 cut(s) 504
PctI GAATGC 1 cut(s) 431
PdmI GAANNNNTTC 2 cut(s) 86, 222
PfeI GAWTC 6 cut(s) 87, 244, 332, 386, 459, 503
PfoI TCCNGGA 1 cut(s) 513
PkrI GCNGC 1 cut(s) 259
PleI GAGTC 4 cut(s) 87, 184, 490, 553
PpsI GAGTC 4 cut(s) 87, 184, 490, 553
PshBI ATTAAT 1 cut(s) 638
Psp6I CCWGG 1 cut(s) 513
PspGI CCWGG 1 cut(s) 513
PspN4I GGNNCC 1 cut(s) 17
RseI CAYNNNNRTG 1 cut(s) 135
SalI GTCGAC 1 cut(s) 317
SaqAI TTAA 3 cut(s) 276, 324, 638
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 4 cut(s) 100, 156, 381, 421
SchI GAGTC 4 cut(s) 87, 185, 491, 554
ScrFI CCNGG 1 cut(s) 515
SetI ASST 6 cut(s) 156, 259, 271, 330, 564, 674
SfaNI GCATC 1 cut(s) 131
SmiMI CAYNNNNRTG 1 cut(s) 135
SmlI CTYRAG 1 cut(s) 180
SmoI CTYRAG 1 cut(s) 180
SpeI ACTAGT 1 cut(s) 364
Sse9I AATT 7 cut(s) 220, 272, 529, 570, 632, 639, 651
SspI AATATT 1 cut(s) 163
SspMI CTAG 5 cut(s) 116, 309, 365, 563, 669
StyD4I CCNGG 1 cut(s) 513
StyI CCWWGG 2 cut(s) 237, 668
TaaI ACNGT 2 cut(s) 27, 134
TaiI ACGT 1 cut(s) 156
TaqI TCGA 4 cut(s) 5, 318, 384, 548
TasI AATT 7 cut(s) 220, 272, 529, 570, 632, 639, 651
TfiI GAWTC 6 cut(s) 87, 244, 332, 386, 459, 503
Tru1I TTAA 3 cut(s) 276, 324, 638
Tru9I TTAA 3 cut(s) 276, 324, 638
TseI GCWGC 1 cut(s) 257
TspDTI ATGAA 3 cut(s) 74, 338, 683
TspGWI ACGGA 1 cut(s) 78
VspI ATTAAT 1 cut(s) 638
XapI RAATTY 2 cut(s) 220, 272
XceI RCATGY 1 cut(s) 45
XmaJI CCTAGG 1 cut(s) 668
XmiI GTMKAC 1 cut(s) 318
XmnI GAANNNNTTC 2 cut(s) 86, 222
XspI CTAG 5 cut(s) 116, 309, 365, 563, 669
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.