Prupe.8G057000_v2.0.a1

Retrotransposon gag protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0022460
Physical Location & Seq
Forward (+)
6724137 .. 6725383
1247 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G057000.1

Sequence Viewer

Length: 462 bp
ATGTTGTATGTCGAGTGTATGGCTCCAACTACAGTTGGTAAGACAAACATGCCAGCAATGGTCTATGAACGGATTGTTCATATGCTGGAAACTCTAACAAAGCAAGTGGCAGATTCCAAAGAACGATTTAGACTCATGGATCATCGTCTTGCAAAACTAGAAGCATCCAAGCACCCTTATGTGGATAAGTTTGACGTGATCAATATTTGTTCAAAGAAGGAGTCTCGAGAATGTCAATCCATTGATGTTTGGAAACAAGGAGAAAATTTTCAAGACAATACCACGGAGATTCAAGTAGAAGCTGCTGGTCAAGGTGAGTTTAAGGAAGAAGTGTGTAAGCCTGAACTTCTTGCTAGTGTTGTCGACATTAAGGTTGAATCTGGTGAGATTTTTCATCCTATGATGACACTAGTAAGTTGCCCATTGATTGAATCACCGTTCAGCAAAGGAGGGAAAGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotrans_gag zf-CCHC

Protein Analysis

154

Amino Acids

17.34

Weight (kDa)

5.43

Isoelectric Point (pI)

42.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022460)

Species Orthologous Gene IDs
prunus_persica Prupe.1G014200_v2.0.a1 Prupe.7G022700_v2.0.a1 Prupe.7G022700_v2.0.a1 Prupe.8G057000_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 363
AclWI GGATC 1 cut(s) 147
AcsI RAATTY 1 cut(s) 265
AfiI CCNNNNNNNGG 1 cut(s) 181
AgsI TTSAA 5 cut(s) 213, 272, 293, 377, 431
AhlI ACTAGT 1 cut(s) 409
AjiI CACGTC 1 cut(s) 196
AluBI AGCT 1 cut(s) 302
AluI AGCT 1 cut(s) 302
Alw26I GTCTC 1 cut(s) 228
AlwI GGATC 1 cut(s) 147
Ama87I CYCGRG 1 cut(s) 225
ApeKI GCWGC 1 cut(s) 302
ApoI RAATTY 1 cut(s) 265
ArsI GACNNNNNNTTYG 2 cut(s) 206, 238
Asp700I GAANNNNTTC 1 cut(s) 267
AsuHPI GGTGA 3 cut(s) 326, 395, 426
AvaI CYCGRG 1 cut(s) 225
BbvI GCAGC 1 cut(s) 289
BclI TGATCA 1 cut(s) 198
BcoDI GTCTC 1 cut(s) 228
BcuI ACTAGT 1 cut(s) 409
BfaI CTAG 3 cut(s) 158, 354, 410
BfmI CTRYAG 1 cut(s) 30
BisI GCNGC 1 cut(s) 303
BlsI GCNGC 1 cut(s) 304
BmeT110I CYCGRG 1 cut(s) 225
BmgBI CACGTC 1 cut(s) 196
BmiI GGNNCC 1 cut(s) 24
BmsI GCATC 1 cut(s) 173
BsaJI CCNNGG 1 cut(s) 282
BsaXI ACNNNNNCTCC 1 cut(s) 441
Bsc4I CCNNNNNNNGG 1 cut(s) 181
Bse3DI GCAATG 1 cut(s) 63
BseDI CCNNGG 1 cut(s) 282
BseGI GGATG 2 cut(s) 164, 394
BseLI CCNNNNNNNGG 1 cut(s) 181
BseMI GCAATG 1 cut(s) 63
BseXI GCAGC 1 cut(s) 289
BsiHKCI CYCGRG 1 cut(s) 225
BslI CCNNNNNNNGG 1 cut(s) 181
BsmAI GTCTC 1 cut(s) 228
BsoBI CYCGRG 1 cut(s) 225
Bsp143I GATC 2 cut(s) 139, 198
BspLI GGNNCC 1 cut(s) 24
BspPI GGATC 1 cut(s) 147
BsrDI GCAATG 1 cut(s) 63
BssECI CCNNGG 1 cut(s) 282
BssMI GATC 2 cut(s) 139, 198
Bst4CI ACNGT 2 cut(s) 34, 438
BstC8I GCNNGC 1 cut(s) 54
BstDSI CCRYGG 1 cut(s) 282
BstF5I GGATG 2 cut(s) 164, 394
BstKTI GATC 2 cut(s) 142, 201
BstMAI GTCTC 1 cut(s) 228
BstMBI GATC 2 cut(s) 139, 198
BstNSI RCATGY 1 cut(s) 52
BstSFI CTRYAG 1 cut(s) 30
BstV1I GCAGC 1 cut(s) 289
BtgI CCRYGG 1 cut(s) 282
BtrI CACGTC 1 cut(s) 196
BtsCI GGATG 2 cut(s) 164, 394
Cac8I GCNNGC 1 cut(s) 54
CspCI CAANNNNNGTGG 2 cut(s) 87, 122
CviAII CATG 2 cut(s) 49, 136
CviJI RGCY 3 cut(s) 23, 302, 340
CviKI_1 RGCY 3 cut(s) 23, 302, 340
DpnI GATC 2 cut(s) 141, 200
DpnII GATC 2 cut(s) 139, 198
Eco88I CYCGRG 1 cut(s) 225
FaeI CATG 2 cut(s) 52, 139
FaiI YATR 9 cut(s) 9, 20, 50, 66, 81, 83, 137, 180, 401
FatI CATG 2 cut(s) 48, 135
FauNDI CATATG 1 cut(s) 81
FbaI TGATCA 1 cut(s) 198
FblI GTMKAC 1 cut(s) 363
Fnu4HI GCNGC 1 cut(s) 303
FokI GGATG 2 cut(s) 151, 381
Fsp4HI GCNGC 1 cut(s) 303
FspBI CTAG 3 cut(s) 158, 354, 410
GluI GCNGC 1 cut(s) 303
Hin1II CATG 2 cut(s) 52, 139
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HinfI GANTC 6 cut(s) 113, 132, 221, 289, 377, 431
HphI GGTGA 3 cut(s) 326, 395, 426
Hpy166II GTNNAC 1 cut(s) 364
Hpy188III TCNNGA 3 cut(s) 225, 227, 272
Hpy8I GTNNAC 1 cut(s) 364
HpyAV CCTTC 1 cut(s) 211
HpyCH4III ACNGT 2 cut(s) 34, 438
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 1 cut(s) 152
HpySE526I ACGT 1 cut(s) 195
Hsp92II CATG 2 cut(s) 52, 139
Ksp22I TGATCA 1 cut(s) 198
Kzo9I GATC 2 cut(s) 139, 198
LmnI GCTCC 1 cut(s) 28
LpnPI CCDG 5 cut(s) 66, 71, 291, 354, 366
Lsp1109I GCAGC 1 cut(s) 289
LweI GCATC 1 cut(s) 173
MaeI CTAG 3 cut(s) 158, 354, 410
MaeII ACGT 1 cut(s) 195
MalI GATC 2 cut(s) 141, 200
MboI GATC 2 cut(s) 139, 198
MboII GAAGA 1 cut(s) 338
MluCI AATT 1 cut(s) 265
MlyI GAGTC 2 cut(s) 126, 230
MmeI TCCRAC 1 cut(s) 50
MnlI CCTC 1 cut(s) 443
MroXI GAANNNNTTC 1 cut(s) 267
MseI TTAA 2 cut(s) 321, 369
MslI CAYNNNNRTG 1 cut(s) 177
NdeI CATATG 1 cut(s) 81
NdeII GATC 2 cut(s) 139, 198
NlaIII CATG 2 cut(s) 52, 139
NlaIV GGNNCC 1 cut(s) 24
NspI RCATGY 1 cut(s) 52
PaeR7I CTCGAG 1 cut(s) 225
PdmI GAANNNNTTC 1 cut(s) 267
PfeI GAWTC 4 cut(s) 113, 289, 377, 431
PkrI GCNGC 1 cut(s) 304
PleI GAGTC 2 cut(s) 126, 229
PpsI GAGTC 2 cut(s) 126, 229
PspN4I GGNNCC 1 cut(s) 24
RseI CAYNNNNRTG 1 cut(s) 177
SalI GTCGAC 1 cut(s) 362
SaqAI TTAA 2 cut(s) 321, 369
SatI GCNGC 1 cut(s) 303
Sau3AI GATC 2 cut(s) 139, 198
SchI GAGTC 2 cut(s) 126, 230
SetI ASST 4 cut(s) 198, 304, 316, 375
SfaNI GCATC 1 cut(s) 173
SfcI CTRYAG 1 cut(s) 30
Sfr274I CTCGAG 1 cut(s) 225
SlaI CTCGAG 1 cut(s) 225
SmiMI CAYNNNNRTG 1 cut(s) 177
SmlI CTYRAG 1 cut(s) 225
SmoI CTYRAG 1 cut(s) 225
SpeI ACTAGT 1 cut(s) 409
Sse9I AATT 1 cut(s) 265
SspI AATATT 1 cut(s) 205
SspMI CTAG 3 cut(s) 158, 354, 410
TaaI ACNGT 2 cut(s) 34, 438
TaiI ACGT 1 cut(s) 198
TaqI TCGA 3 cut(s) 12, 226, 363
TasI AATT 1 cut(s) 265
TfiI GAWTC 4 cut(s) 113, 289, 377, 431
Tru1I TTAA 2 cut(s) 321, 369
Tru9I TTAA 2 cut(s) 321, 369
TseI GCWGC 1 cut(s) 302
TspDTI ATGAA 3 cut(s) 68, 81, 383
TspGWI ACGGA 2 cut(s) 85, 299
XapI RAATTY 1 cut(s) 265
XceI RCATGY 1 cut(s) 52
XhoI CTCGAG 1 cut(s) 225
XmiI GTMKAC 1 cut(s) 363
XmnI GAANNNNTTC 1 cut(s) 267
XspI CTAG 3 cut(s) 158, 354, 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.