Prupe.1G022100_v2.0.a1

late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0024548
Physical Location & Seq
Reverse (-)
1515587 .. 1517416
1830 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G022100.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 1398 bp
ATGGAAAACGAGAACATTTCTGATCAGAGAGAAGAAAGTGGAGTCCCGAATCAAGATTCTCAAAGTCTTGATCTTGAAGCTCTTCAAGCGACATCAGAACTGAACAAATTCACCATGGATGATAAGGGCAGCGCATCGATCTCGACTGAAGAAATTGTGGGTCGTGACCAACGTACTGAGTTGGTGGTTGAGGAAGAAAAAAGTCCAAATATGAGTGGGGTTTTGCTGGGTAGGACTGAAGGGTTGAAAAGTGAAGAAGAAGACGCTGTGAAAGCAAAGTTCTTGAATGGAAAAGAGAACAGTACTGAAGATGGGTCAGTGTGTGGACAAGAGAACAGTACTGAAGATGGGGCAGTTGCTGATCAGCAAGGCCTCCATCCTCCTCTTCATTCTGAAATTGCTGAACAGAAACACGCTGCTGATTCAGAATTGAGGCATTCTTGTAGTTCTGAAGGAGATGGGAAGGAGATTGTGGGTTCAGATGAGATTGTGAAAGGAGAGGTGGTGGAATCAGTGTTCTTGAATGAAAAAATGGTGGGTTCGGATGAGAATCTGGGTTTGATAACTGGGTCAGGGTCAGTGGGTGGACAAGAAAAGACTGAAAATGGGAAAGGGGTAGTTACAGATCAACAAGACCTCAATAATCTTGTTCCTGAAATTTCTGAGAAAGAGCAAATTGGTTCTGGTTCAGGGTCGAGTTTATCTGGTTCAGGAGGAGTCACAGATCAAAATTTTGAGTTTGGAATGAGAGCAGATGACGTGACAGCAGATCAGAGAGCAAATGAGGCTGATGAATCCAATCAAGAATGGAGGGATATCAAAGAGGCTATCATGAGAGCAGATCAGCTGGACCTAGAGTCTATTGGCCTAAAGATTGAACGTCGGGTGCGAGCTTCGGTTGAGGACATGGTGAGATATCCCCAGATGAATTCAAAGACAATGAGTCTCTCTATAGGTGACTGGGAGAGAATTCTGGAAGCTGATCAAGTACCCATGCAGAGAGAACTTGGAGAGCTGAAAAAGAAAAACGTTGAGATTACATTCGAGAATTTGTCTCTCGAGGCACAGATAGATGGAGAGCAAAGAAAGATGCAGGCATTAAAGGCGCTTTCTGAGTATATGGAAGGTAAACTTGGTGTTATTAAGGAAGCAGAACTTGATAAGGGGAAGACCATTGCTGAACTTGAAGAAGAAACAAAAACTGAAGTTGAGAAGGAAAAGAATGAGATACATGAACTGCAGGAACTAGTTAACGTGGAAGAATCAAAAGAGACTGAGTTGAAAGTGGAGATGCCATCAAAGACCCCAGGGCTGCTGCATAGGCCTAAGCTGCTGATGTCTGCCGGTATCGTAATAACTGCTATACTTTACACAGCATTGAAGATGAAGCGAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

466

Amino Acids

51.2

Weight (kDa)

4.53

Isoelectric Point (pI)

46.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024548)

Species Orthologous Gene IDs
prunus_persica Prupe.1G020500_v2.0.a1 Prupe.1G022100_v2.0.a1 Prupe.4G049800_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 1029
AcsI RAATTY 6 cut(s) 107, 657, 730, 928, 969, 1048
AcuI CTGAAG 6 cut(s) 168, 258, 327, 363, 471, 1224
AfaI GTAC 4 cut(s) 175, 304, 340, 990
AhdI GACNNNNNGTC 2 cut(s) 856, 942
AhlI ACTAGT 1 cut(s) 1246
AjiI CACGTC 1 cut(s) 760
AjnI CCWGG 1 cut(s) 1306
AjuI GAANNNNNNNTTGG 2 cut(s) 1116, 1148
AloI GAACNNNNNNTCC 2 cut(s) 500, 532
AluBI AGCT 6 cut(s) 80, 847, 893, 980, 1015, 1330
AluI AGCT 6 cut(s) 80, 847, 893, 980, 1015, 1330
Alw26I GTCTC 3 cut(s) 950, 1059, 1265
AlwNI CAGNNNCTG 1 cut(s) 359
Ama87I CYCGRG 1 cut(s) 1058
AoxI GGCC 3 cut(s) 370, 865, 1322
ApeKI GCWGC 5 cut(s) 129, 416, 1312, 1315, 1330
ApoI RAATTY 6 cut(s) 107, 657, 730, 928, 969, 1048
Asp700I GAANNNNTTC 2 cut(s) 81, 107
AspLEI GCGC 2 cut(s) 134, 1108
AspS9I GGNCC 1 cut(s) 850
AsuHPI GGTGA 3 cut(s) 103, 922, 968
AvaI CYCGRG 1 cut(s) 1058
AvaII GGWCC 1 cut(s) 850
BbsI GAAGAC 2 cut(s) 267, 1175
BbvI GCAGC 5 cut(s) 141, 403, 1299, 1302, 1317
BccI CCATC 6 cut(s) 305, 341, 384, 452, 1067, 1303
BcgI CGANNNNNNTGC 2 cut(s) 123, 157
BciT130I CCWGG 1 cut(s) 1308
BclI TGATCA 3 cut(s) 22, 361, 982
BcoDI GTCTC 3 cut(s) 950, 1059, 1265
BcuI ACTAGT 1 cut(s) 1246
BfaI CTAG 2 cut(s) 854, 1247
BfmI CTRYAG 2 cut(s) 951, 1238
BfoI RGCGCY 1 cut(s) 1109
BisI GCNGC 5 cut(s) 130, 417, 1313, 1316, 1331
BlsI GCNGC 5 cut(s) 131, 418, 1314, 1317, 1332
BmcAI AGTACT 2 cut(s) 304, 340
Bme1390I CCNGG 1 cut(s) 1308
Bme18I GGWCC 1 cut(s) 850
BmeRI GACNNNNNGTC 2 cut(s) 856, 942
BmeT110I CYCGRG 1 cut(s) 1058
BmgBI CACGTC 1 cut(s) 760
BmgT120I GGNCC 1 cut(s) 850
BmrFI CCNGG 1 cut(s) 1308
BmrI ACTGGG 2 cut(s) 576, 970
BmsI GCATC 3 cut(s) 143, 1080, 1281
BmuI ACTGGG 2 cut(s) 576, 970
BpiI GAAGAC 2 cut(s) 267, 1175
Bpu10I CCTNAGC 1 cut(s) 1326
Bsa29I ATCGAT 1 cut(s) 137
BsaBI GATNNNNATC 1 cut(s) 549
BsaJI CCNNGG 3 cut(s) 114, 1306, 1307
BsaXI ACNNNNNCTCC 2 cut(s) 489, 519
Bse118I RCCGGY 1 cut(s) 1343
Bse1I ACTGG 2 cut(s) 571, 965
Bse3DI GCAATG 1 cut(s) 1173
Bse8I GATNNNNATC 1 cut(s) 549
BseBI CCWGG 1 cut(s) 1308
BseCI ATCGAT 1 cut(s) 137
BseDI CCNNGG 3 cut(s) 114, 1306, 1307
BseGI GGATG 3 cut(s) 124, 376, 550
BseJI GATNNNNATC 1 cut(s) 549
BseMI GCAATG 1 cut(s) 1173
BseMII CTCAG 4 cut(s) 168, 654, 1104, 1266
BseNI ACTGG 2 cut(s) 571, 965
BseRI GAGGAG 2 cut(s) 372, 729
BseXI GCAGC 5 cut(s) 141, 403, 1299, 1302, 1317
BseYI CCCAGC 1 cut(s) 226
BshFI GGCC 3 cut(s) 372, 867, 1324
BshVI ATCGAT 1 cut(s) 137
BsiHKCI CYCGRG 1 cut(s) 1058
BsiSI CCGG 1 cut(s) 1344
BslFI GGGAC 1 cut(s) 29
BsmAI GTCTC 3 cut(s) 950, 1059, 1265
BsmFI GGGAC 1 cut(s) 29
BsmI GAATGC 1 cut(s) 436
BsnI GGCC 3 cut(s) 372, 867, 1324
BsoBI CYCGRG 1 cut(s) 1058
Bsp143I GATC 9 cut(s) 22, 70, 138, 361, 625, 724, 769, 841, 982
Bsp19I CCATGG 1 cut(s) 114
BspANI GGCC 3 cut(s) 372, 867, 1324
BspCNI CTCAG 4 cut(s) 169, 655, 1105, 1267
BspDI ATCGAT 1 cut(s) 137
BspHI TCATGA 1 cut(s) 831
BspMAI CTGCAG 1 cut(s) 1242
BspQI GCTCTTC 1 cut(s) 87
BsrDI GCAATG 1 cut(s) 1173
BsrFI RCCGGY 1 cut(s) 1343
BsrI ACTGG 2 cut(s) 571, 965
BssAI RCCGGY 1 cut(s) 1343
BssECI CCNNGG 3 cut(s) 114, 1306, 1307
BssMI GATC 9 cut(s) 22, 70, 138, 361, 625, 724, 769, 841, 982
BssT1I CCWWGG 1 cut(s) 114
Bst2UI CCWGG 1 cut(s) 1308
Bst4CI ACNGT 2 cut(s) 302, 338
Bst6I CTCTTC 2 cut(s) 87, 390
BstC8I GCNNGC 2 cut(s) 891, 1095
BstDEI CTNAG 5 cut(s) 177, 663, 1113, 1275, 1326
BstDSI CCRYGG 1 cut(s) 114
BstF5I GGATG 3 cut(s) 124, 376, 550
BstH2I RGCGCY 1 cut(s) 1109
BstHHI GCGC 2 cut(s) 134, 1108
BstKTI GATC 9 cut(s) 25, 73, 141, 364, 628, 727, 772, 844, 985
BstMAI GTCTC 3 cut(s) 950, 1059, 1265
BstMBI GATC 9 cut(s) 22, 70, 138, 361, 625, 724, 769, 841, 982
BstMWI GCNNNNNNNGC 6 cut(s) 86, 272, 785, 1103, 1321, 1330
BstNI CCWGG 1 cut(s) 1308
BstSCI CCNGG 1 cut(s) 1306
BstSFI CTRYAG 2 cut(s) 951, 1238
BstV1I GCAGC 5 cut(s) 141, 403, 1299, 1302, 1317
BstV2I GAAGAC 2 cut(s) 267, 1175
Bsu15I ATCGAT 1 cut(s) 137
BsuRI GGCC 3 cut(s) 372, 867, 1324
BsuTUI ATCGAT 1 cut(s) 137
BtgI CCRYGG 1 cut(s) 114
BtrI CACGTC 1 cut(s) 760
BtsCI GGATG 3 cut(s) 124, 376, 550
BtsIMutI CAGTG 3 cut(s) 324, 519, 585
Cac8I GCNNGC 2 cut(s) 891, 1095
CaiI CAGNNNCTG 1 cut(s) 359
CciI TCATGA 1 cut(s) 831
CfoI GCGC 2 cut(s) 134, 1108
Cfr10I RCCGGY 1 cut(s) 1343
Cfr13I GGNCC 1 cut(s) 850
ClaI ATCGAT 1 cut(s) 137
CseI GACGC 1 cut(s) 272
Csp6I GTAC 4 cut(s) 174, 303, 339, 989
CviAII CATG 5 cut(s) 115, 832, 907, 994, 1232
CviQI GTAC 4 cut(s) 174, 303, 339, 989
DdeI CTNAG 5 cut(s) 177, 663, 1113, 1275, 1326
DpnI GATC 9 cut(s) 24, 72, 140, 363, 627, 726, 771, 843, 984
DpnII GATC 9 cut(s) 22, 70, 138, 361, 625, 724, 769, 841, 982
DriI GACNNNNNGTC 2 cut(s) 856, 942
Eam1104I CTCTTC 2 cut(s) 87, 390
Eam1105I GACNNNNNGTC 2 cut(s) 856, 942
EarI CTCTTC 2 cut(s) 87, 390
Eco130I CCWWGG 1 cut(s) 114
Eco147I AGGCCT 2 cut(s) 372, 1324
Eco32I GATATC 2 cut(s) 817, 917
Eco47I GGWCC 1 cut(s) 850
Eco57I CTGAAG 6 cut(s) 168, 258, 327, 363, 471, 1224
Eco88I CYCGRG 1 cut(s) 1058
EcoRI GAATTC 2 cut(s) 928, 969
EcoRII CCWGG 1 cut(s) 1306
EcoRV GATATC 2 cut(s) 817, 917
EcoT14I CCWWGG 1 cut(s) 114
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 5 cut(s) 118, 835, 910, 997, 1235
FalI AAGNNNNNCTT 4 cut(s) 1116, 1148, 1140, 1172
FaqI GGGAC 1 cut(s) 29
FatI CATG 5 cut(s) 114, 831, 906, 993, 1231
FbaI TGATCA 3 cut(s) 22, 361, 982
Fnu4HI GCNGC 5 cut(s) 130, 417, 1313, 1316, 1331
FokI GGATG 3 cut(s) 131, 363, 557
Fsp4HI GCNGC 5 cut(s) 130, 417, 1313, 1316, 1331
FspBI CTAG 2 cut(s) 854, 1247
GlaI GCGC 2 cut(s) 133, 1107
GluI GCNGC 5 cut(s) 130, 417, 1313, 1316, 1331
GsaI CCCAGC 1 cut(s) 230
HaeII RGCGCY 1 cut(s) 1109
HaeIII GGCC 3 cut(s) 372, 867, 1324
HapII CCGG 1 cut(s) 1344
HgaI GACGC 1 cut(s) 272
HhaI GCGC 2 cut(s) 134, 1108
Hin1II CATG 5 cut(s) 118, 835, 910, 997, 1235
Hin6I GCGC 2 cut(s) 132, 1106
HinP1I GCGC 2 cut(s) 132, 1106
HincII GTYRAC 1 cut(s) 1252
HindII GTYRAC 1 cut(s) 1252
HpaI GTTAAC 1 cut(s) 1252
HpaII CCGG 1 cut(s) 1344
HphI GGTGA 3 cut(s) 103, 922, 968
Hpy166II GTNNAC 4 cut(s) 326, 587, 1130, 1252
Hpy8I GTNNAC 4 cut(s) 326, 587, 1130, 1252
Hpy99I CGWCG 1 cut(s) 885
HpyAV CCTTC 6 cut(s) 233, 446, 457, 1118, 1207, 1386
HpyCH4III ACNGT 2 cut(s) 302, 338
HpyCH4IV ACGT 5 cut(s) 172, 759, 880, 1029, 1254
HpyCH4V TGCA 4 cut(s) 997, 1093, 1240, 1318
HpyF10VI GCNNNNNNNGC 6 cut(s) 86, 272, 785, 1103, 1321, 1330
HpyF3I CTNAG 5 cut(s) 177, 663, 1113, 1275, 1326
HpySE526I ACGT 5 cut(s) 172, 759, 880, 1029, 1254
Hsp92II CATG 5 cut(s) 118, 835, 910, 997, 1235
HspAI GCGC 2 cut(s) 132, 1106
Ksp22I TGATCA 3 cut(s) 22, 361, 982
KspAI GTTAAC 1 cut(s) 1252
Kzo9I GATC 9 cut(s) 22, 70, 138, 361, 625, 724, 769, 841, 982
LguI GCTCTTC 1 cut(s) 87
Lsp1109I GCAGC 5 cut(s) 141, 403, 1299, 1302, 1317
LweI GCATC 3 cut(s) 143, 1080, 1281
MaeI CTAG 2 cut(s) 854, 1247
MaeII ACGT 5 cut(s) 172, 759, 880, 1029, 1254
MaeIII GTNAC 5 cut(s) 164, 619, 718, 760, 956
MalI GATC 9 cut(s) 24, 72, 140, 363, 627, 726, 771, 843, 984
MboI GATC 9 cut(s) 22, 70, 138, 361, 625, 724, 769, 841, 982
MlyI GAGTC 4 cut(s) 51, 726, 866, 952
MroXI GAANNNNTTC 2 cut(s) 81, 107
MseI TTAA 3 cut(s) 1100, 1143, 1251
MspA1I CMGCKG 1 cut(s) 847
MspI CCGG 1 cut(s) 1344
MspR9I CCNGG 1 cut(s) 1308
Mva1269I GAATGC 1 cut(s) 436
MvaI CCWGG 1 cut(s) 1308
MwoI GCNNNNNNNGC 6 cut(s) 86, 272, 785, 1103, 1321, 1330
NcoI CCATGG 1 cut(s) 114
NdeII GATC 9 cut(s) 22, 70, 138, 361, 625, 724, 769, 841, 982
NlaIII CATG 5 cut(s) 118, 835, 910, 997, 1235
NmuCI GTSAC 4 cut(s) 164, 718, 760, 956
PaeR7I CTCGAG 1 cut(s) 1058
PagI TCATGA 1 cut(s) 831
PasI CCCWGGG 1 cut(s) 1307
PceI AGGCCT 2 cut(s) 372, 1324
PciSI GCTCTTC 1 cut(s) 87
PcsI WCGNNNNNNNCGW 2 cut(s) 169, 886
PctI GAATGC 1 cut(s) 436
PdmI GAANNNNTTC 2 cut(s) 81, 107
PfeI GAWTC 7 cut(s) 49, 56, 422, 509, 550, 794, 1262
PkrI GCNGC 5 cut(s) 131, 418, 1314, 1317, 1332
PleI GAGTC 4 cut(s) 50, 725, 865, 951
PpsI GAGTC 4 cut(s) 50, 725, 865, 951
Psp1406I AACGTT 1 cut(s) 1029
Psp6I CCWGG 1 cut(s) 1306
PspFI CCCAGC 1 cut(s) 226
PspGI CCWGG 1 cut(s) 1306
PspPI GGNCC 1 cut(s) 850
PstI CTGCAG 1 cut(s) 1242
PstNI CAGNNNCTG 1 cut(s) 359
PvuII CAGCTG 1 cut(s) 847
RsaI GTAC 4 cut(s) 175, 304, 340, 990
RsaNI GTAC 4 cut(s) 174, 303, 339, 989
SapI GCTCTTC 1 cut(s) 87
SaqAI TTAA 3 cut(s) 1100, 1143, 1251
SatI GCNGC 5 cut(s) 130, 417, 1313, 1316, 1331
Sau3AI GATC 9 cut(s) 22, 70, 138, 361, 625, 724, 769, 841, 982
Sau96I GGNCC 1 cut(s) 850
ScaI AGTACT 2 cut(s) 304, 340
SchI GAGTC 4 cut(s) 51, 726, 866, 952
ScrFI CCNGG 1 cut(s) 1308
SfaNI GCATC 3 cut(s) 143, 1080, 1281
SfcI CTRYAG 2 cut(s) 951, 1238
Sfr274I CTCGAG 1 cut(s) 1058
SinI GGWCC 1 cut(s) 850
SlaI CTCGAG 1 cut(s) 1058
SmlI CTYRAG 1 cut(s) 1058
SmoI CTYRAG 1 cut(s) 1058
SpeI ACTAGT 1 cut(s) 1246
SseBI AGGCCT 2 cut(s) 372, 1324
SspMI CTAG 2 cut(s) 854, 1247
StuI AGGCCT 2 cut(s) 372, 1324
StyD4I CCNGG 1 cut(s) 1306
StyI CCWWGG 1 cut(s) 114
TaaI ACNGT 2 cut(s) 302, 338
TaiI ACGT 5 cut(s) 175, 762, 883, 1032, 1257
TaqI TCGA 5 cut(s) 137, 143, 695, 1044, 1059
TatI WGTACW 2 cut(s) 302, 338
TfiI GAWTC 7 cut(s) 49, 56, 422, 509, 550, 794, 1262
Tru1I TTAA 3 cut(s) 1100, 1143, 1251
Tru9I TTAA 3 cut(s) 1100, 1143, 1251
TscAI CASTG 3 cut(s) 324, 519, 585
TseFI GTSAC 4 cut(s) 164, 718, 760, 956
TseI GCWGC 5 cut(s) 129, 416, 1312, 1315, 1330
Tsp45I GTSAC 4 cut(s) 164, 718, 760, 956
TspDTI ATGAA 5 cut(s) 377, 540, 807, 941, 1248
TspRI CASTG 3 cut(s) 324, 519, 585
VpaK11BI GGWCC 1 cut(s) 850
XapI RAATTY 6 cut(s) 107, 657, 730, 928, 969, 1048
XhoI CTCGAG 1 cut(s) 1058
XmnI GAANNNNTTC 2 cut(s) 81, 107
XspI CTAG 2 cut(s) 854, 1247
ZrmI AGTACT 2 cut(s) 304, 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.