Prupe.4G049800_v2.0.a1

late embryogenesis abundant protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
2379881 .. 2381949
2069 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G049800.1

Sequence Viewer

Length: 1596 bp
ATGGAAAACGACAACAATTCTGATATGACAGAAGAAAGTGGAGTCACGAATCAAGATTCTATCAGTCTTTCGCTTGAAGCTCTTCAAGCGATATCAGACTTGAACGAATTAACCATGGAAGATGAGGGAAGCATATTGATCATGTCTGAAGAAATTGTGGGTCGTGACCACCGTACTGGATTGGCGGGTGAAGCAGAGCAAGAAGAAAGTCCAAATGTAAGCTGGGTTTTGCTGGGTAGGGCTGAAGAAGAAGTTGATGTGAACTCAAAGTCCCTCAATCCTTCTGAAATTGCTGAAAAAGAACACGCTGATTCACAGTTTTGGTTTATAGGCAGAAAGAAGGCAACTTCGGTTTTGAGTGTTCTGAAATTGGTAAATTCAATGTTCCTCAATCCTCATCTTGATTCTGATATTTCTGATTCTGAAGGAGTTAAAAAAGATTTGGATTTTGAGTTTATAATCAGAAAAGATGAAAAGCAGATGGTGGGTTTGGATCATCATAATGTGAAATCAGTGTTCTTTAATGTCAAAATGGTGGGTTCGGATGAGATTTTGGGTTCTTTGTCGGTGTGTGGAAAAGAAAAGACTGATCAACAAGACCTCAATAATCTTGTTCCTGAATTTGCAGAGAAAGAAAACATTGGTTTTGGTTCAGGGTCGAGTTCATGTTGTAGTGAAGGGGTTGAAGCTTTTGAGTTTATAATCAAAAGAAAAGATGTCATGAGAGCACATCATCTTGAACTGGAGGGTATTGGCCTGAAGAAAGAGGTTGCAACCCGTGGCATTCCATTCTGGCATGTGAATCATGTAATTAGGAGGAGTTGGAGCGGGAAGATATGGAGGGCATCATTGAACGGCATCATTGAAGGTGAAGATATGGATGTAGATGACCCTGACGCTACTGAAAGTGACAGTGACGATGACAGGGATTTTGGTGACTACATTGGAAATGAAAGAGAAGATGATGGGGATGAAGGAGGAGTTGATGGTCAGAACAAAAAGGTGCCAGTTATTAGGCTATATCAGGAAGAAGAATACATCTGTGGGAAACTAACGATCAATGATTACCATAACGCACATCAGTTGGAAGAGGCAGTTTACAATCTCGTTCTGGAAACAAGGGCAATATTTCGCCAGCGATGGCTCACGCCATTGACCACCGAGTATATCCTGAGGTATCGAAGAAAGAATAGTCCACAAAATTGGACAGACCTTGCTATATTTGAAATGGACTGGGAGGAAGTTGCTGCGCGCCTATTTGTAGTTAATGCCATAGATAACACTGAAGATCATTTAAACCATTACTATCTACCGGTGTTTAGGAGGTCAGTTGACGGAGCATCCCAAAAAATTGGGGATTTGTACCCTTGGGACTACAGGGATGCAGAGGAGTTGGAGCGTGCTAGTAAACATGTCCTCAGCAAACATGGTGTTTTAGATACAACGGAGTACAGTTTCCAGTATTATGGAGAAGGGAATGAAGAACTCCACATGTTTGAATTGGATTGGCAGCAGGTTCTTCAACTTGACCTCCTATCAAGTGTGTACGCCACACATAACGTTCCAAGGGAAGGAGATGGAGATGATGGTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

532

Amino Acids

60.45

Weight (kDa)

4.52

Isoelectric Point (pI)

42.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0024548)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 458, 701
Acc36I ACCTGC 1 cut(s) 1504
AccB1I GGYRCC 1 cut(s) 1003
AccBSI CCGCTC 1 cut(s) 828
AccII CGCG 1 cut(s) 1252
AciI CCGC 2 cut(s) 185, 828
AclI AACGTT 1 cut(s) 1560
AclWI GGATC 1 cut(s) 501
AcsI RAATTY 2 cut(s) 376, 620
AcuI CTGAAG 5 cut(s) 168, 264, 444, 779, 1305
AfaI GTAC 4 cut(s) 175, 1364, 1451, 1547
AfiI CCNNNNNNNGG 1 cut(s) 1571
AflIII ACRYGT 2 cut(s) 1411, 1491
AgeI ACCGGT 1 cut(s) 1312
AloI GAACNNNNNNTCC 2 cut(s) 254, 286
AluBI AGCT 3 cut(s) 80, 222, 689
AluI AGCT 3 cut(s) 80, 222, 689
Alw21I GWGCWC 1 cut(s) 730
AlwI GGATC 1 cut(s) 501
AoxI GGCC 1 cut(s) 754
ApeKI GCWGC 2 cut(s) 1247, 1510
ApoI RAATTY 2 cut(s) 376, 620
ArsI GACNNNNNNTTYG 2 cut(s) 914, 946
AsiGI ACCGGT 1 cut(s) 1312
Asp700I GAANNNNTTC 1 cut(s) 81
AspLEI GCGC 2 cut(s) 1252, 1254
AsuHPI GGTGA 3 cut(s) 200, 881, 947
AxyI CCTNAGG 1 cut(s) 1172
BanI GGYRCC 1 cut(s) 1003
Bbv12I GWGCWC 1 cut(s) 730
BbvCI CCTCAGC 1 cut(s) 1418
BbvI GCAGC 2 cut(s) 1234, 1522
BccI CCATC 6 cut(s) 475, 959, 980, 1134, 1571, 1580
BceAI ACGGC 1 cut(s) 871
BclI TGATCA 2 cut(s) 138, 589
BfaI CTAG 1 cut(s) 1404
BfmI CTRYAG 1 cut(s) 1375
BfuAI ACCTGC 1 cut(s) 1504
BisI GCNGC 2 cut(s) 1248, 1511
BlsI GCNGC 2 cut(s) 1249, 1512
BmiI GGNNCC 1 cut(s) 1005
BmrI ACTGGG 1 cut(s) 1243
BmsI GCATC 4 cut(s) 854, 867, 1349, 1372
BmuI ACTGGG 1 cut(s) 1243
BpmI CTGGAG 1 cut(s) 764
Bpu10I CCTNAGC 1 cut(s) 1418
BsaJI CCNNGG 4 cut(s) 114, 778, 1367, 1565
BsaWI WCCGGW 1 cut(s) 1312
BsaXI ACNNNNNCTCC 2 cut(s) 1515, 1545
Bsc4I CCNNNNNNNGG 1 cut(s) 1571
Bse118I RCCGGY 1 cut(s) 1312
Bse1I ACTGG 5 cut(s) 181, 747, 1007, 1238, 1459
Bse21I CCTNAGG 1 cut(s) 1172
BseDI CCNNGG 4 cut(s) 114, 778, 1367, 1565
BseGI GGATG 5 cut(s) 550, 886, 976, 1340, 1387
BseLI CCNNNNNNNGG 1 cut(s) 1571
BseMII CTCAG 2 cut(s) 1163, 1432
BseNI ACTGG 5 cut(s) 181, 747, 1007, 1238, 1459
BsePI GCGCGC 1 cut(s) 1250
BseRI GAGGAG 3 cut(s) 832, 993, 1403
BseXI GCAGC 2 cut(s) 1234, 1522
BseYI CCCAGC 2 cut(s) 222, 232
Bsh1236I CGCG 1 cut(s) 1252
BshFI GGCC 1 cut(s) 756
BshNI GGYRCC 1 cut(s) 1003
BshTI ACCGGT 1 cut(s) 1312
BsiHKAI GWGCWC 1 cut(s) 730
BsiSI CCGG 1 cut(s) 1313
BslFI GGGAC 2 cut(s) 256, 1385
BslI CCNNNNNNNGG 1 cut(s) 1571
BsmFI GGGAC 2 cut(s) 256, 1385
BsmI GAATGC 1 cut(s) 783
BsnI GGCC 1 cut(s) 756
Bsp1286I GDGCHC 1 cut(s) 730
Bsp143I GATC 5 cut(s) 138, 493, 589, 1056, 1288
Bsp19I CCATGG 1 cut(s) 114
BspACI CCGC 2 cut(s) 185, 828
BspANI GGCC 1 cut(s) 756
BspCNI CTCAG 2 cut(s) 1164, 1431
BspFNI CGCG 1 cut(s) 1252
BspHI TCATGA 1 cut(s) 720
BspLI GGNNCC 1 cut(s) 1005
BspMI ACCTGC 1 cut(s) 1504
BspPI GGATC 1 cut(s) 501
BspQI GCTCTTC 1 cut(s) 87
BspT107I GGYRCC 1 cut(s) 1003
BsrBI CCGCTC 1 cut(s) 828
BsrFI RCCGGY 1 cut(s) 1312
BsrI ACTGG 5 cut(s) 181, 747, 1007, 1238, 1459
BssAI RCCGGY 1 cut(s) 1312
BssECI CCNNGG 4 cut(s) 114, 778, 1367, 1565
BssHII GCGCGC 1 cut(s) 1250
BssMI GATC 5 cut(s) 138, 493, 589, 1056, 1288
BssT1I CCWWGG 3 cut(s) 114, 1367, 1565
Bst4CI ACNGT 4 cut(s) 173, 318, 914, 1454
Bst6I CTCTTC 2 cut(s) 87, 1083
BstC8I GCNNGC 3 cut(s) 1136, 1252, 1401
BstDEI CTNAG 2 cut(s) 1172, 1418
BstDSI CCRYGG 2 cut(s) 114, 778
BstF5I GGATG 5 cut(s) 550, 886, 976, 1340, 1387
BstFNI CGCG 1 cut(s) 1252
BstHHI GCGC 2 cut(s) 1252, 1254
BstKTI GATC 5 cut(s) 141, 496, 592, 1059, 1291
BstMBI GATC 5 cut(s) 138, 493, 589, 1056, 1288
BstMWI GCNNNNNNNGC 2 cut(s) 86, 191
BstNSI RCATGY 3 cut(s) 800, 1415, 1495
BstSFI CTRYAG 1 cut(s) 1375
BstUI CGCG 1 cut(s) 1252
BstV1I GCAGC 2 cut(s) 1234, 1522
BstXI CCANNNNNNTGG 4 cut(s) 176, 1203, 1352, 1466
Bsu36I CCTNAGG 1 cut(s) 1172
BsuRI GGCC 1 cut(s) 756
BtgI CCRYGG 2 cut(s) 114, 778
BtgZI GCGATG 1 cut(s) 1153
BtsCI GGATG 5 cut(s) 550, 886, 976, 1340, 1387
BtsIMutI CAGTG 3 cut(s) 519, 919, 1281
BveI ACCTGC 1 cut(s) 1504
Cac8I GCNNGC 3 cut(s) 1136, 1252, 1401
CciI TCATGA 1 cut(s) 720
CfoI GCGC 2 cut(s) 1252, 1254
Cfr10I RCCGGY 1 cut(s) 1312
CseI GACGC 1 cut(s) 905
Csp6I GTAC 4 cut(s) 174, 1363, 1450, 1546
CspAI ACCGGT 1 cut(s) 1312
CviAII CATG 9 cut(s) 115, 142, 666, 721, 797, 806, 1412, 1427, 1492
CviJI RGCY 7 cut(s) 80, 222, 242, 689, 756, 1018, 1144
CviKI_1 RGCY 7 cut(s) 80, 222, 242, 689, 756, 1018, 1144
CviQI GTAC 4 cut(s) 174, 1363, 1450, 1546
DdeI CTNAG 2 cut(s) 1172, 1418
DpnI GATC 5 cut(s) 140, 495, 591, 1058, 1290
DpnII GATC 5 cut(s) 138, 493, 589, 1056, 1288
DraI TTTAAA 1 cut(s) 1296
Eam1104I CTCTTC 2 cut(s) 87, 1083
EarI CTCTTC 2 cut(s) 87, 1083
Eco130I CCWWGG 3 cut(s) 114, 1367, 1565
Eco32I GATATC 1 cut(s) 93
Eco57I CTGAAG 5 cut(s) 168, 264, 444, 779, 1305
Eco81I CCTNAGG 1 cut(s) 1172
EcoRV GATATC 1 cut(s) 93
EcoT14I CCWWGG 3 cut(s) 114, 1367, 1565
ErhI CCWWGG 3 cut(s) 114, 1367, 1565
FaeI CATG 9 cut(s) 118, 145, 669, 724, 800, 809, 1415, 1430, 1495
FaqI GGGAC 2 cut(s) 256, 1385
FatI CATG 9 cut(s) 114, 141, 665, 720, 796, 805, 1411, 1426, 1491
FauI CCCGC 2 cut(s) 178, 821
FbaI TGATCA 2 cut(s) 138, 589
Fnu4HI GCNGC 2 cut(s) 1248, 1511
FokI GGATG 5 cut(s) 557, 893, 983, 1327, 1394
Fsp4HI GCNGC 2 cut(s) 1248, 1511
FspBI CTAG 1 cut(s) 1404
GlaI GCGC 2 cut(s) 1251, 1253
GluI GCNGC 2 cut(s) 1248, 1511
GsaI CCCAGC 2 cut(s) 226, 236
GsuI CTGGAG 1 cut(s) 764
HaeIII GGCC 1 cut(s) 756
HapII CCGG 1 cut(s) 1313
HgaI GACGC 1 cut(s) 905
HhaI GCGC 2 cut(s) 1252, 1254
Hin1II CATG 9 cut(s) 118, 145, 669, 724, 800, 809, 1415, 1430, 1495
Hin6I GCGC 2 cut(s) 1250, 1252
HinP1I GCGC 2 cut(s) 1250, 1252
HincII GTYRAC 1 cut(s) 1333
HindII GTYRAC 1 cut(s) 1333
HindIII AAGCTT 1 cut(s) 687
HinfI GANTC 7 cut(s) 42, 49, 56, 311, 404, 419, 802
HpaII CCGG 1 cut(s) 1313
HphI GGTGA 3 cut(s) 200, 881, 947
Hpy166II GTNNAC 6 cut(s) 262, 1099, 1196, 1333, 1409, 1546
Hpy8I GTNNAC 6 cut(s) 262, 1099, 1196, 1333, 1409, 1546
HpyAV CCTTC 8 cut(s) 291, 334, 419, 671, 860, 968, 1466, 1565
HpyCH4III ACNGT 4 cut(s) 173, 318, 914, 1454
HpyCH4IV ACGT 1 cut(s) 1560
HpyCH4V TGCA 3 cut(s) 626, 773, 1385
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 191
HpyF3I CTNAG 2 cut(s) 1172, 1418
HpySE526I ACGT 1 cut(s) 1560
Hsp92II CATG 9 cut(s) 118, 145, 669, 724, 800, 809, 1415, 1430, 1495
HspAI GCGC 2 cut(s) 1250, 1252
Ksp22I TGATCA 2 cut(s) 138, 589
Kzo9I GATC 5 cut(s) 138, 493, 589, 1056, 1288
LguI GCTCTTC 1 cut(s) 87
LmnI GCTCC 3 cut(s) 825, 1337, 1396
Lsp1109I GCAGC 2 cut(s) 1234, 1522
LweI GCATC 4 cut(s) 854, 867, 1349, 1372
MaeI CTAG 1 cut(s) 1404
MaeII ACGT 1 cut(s) 1560
MaeIII GTNAC 5 cut(s) 43, 164, 908, 914, 935
MalI GATC 5 cut(s) 140, 495, 591, 1058, 1290
MbiI CCGCTC 1 cut(s) 828
MboI GATC 5 cut(s) 138, 493, 589, 1056, 1288
MhlI GDGCHC 1 cut(s) 730
MlyI GAGTC 1 cut(s) 51
MmeI TCCRAC 3 cut(s) 803, 1065, 1374
MroXI GAANNNNTTC 1 cut(s) 81
MseI TTAA 5 cut(s) 110, 432, 522, 1266, 1295
MslI CAYNNNNRTG 1 cut(s) 501
MspI CCGG 1 cut(s) 1313
Mva1269I GAATGC 1 cut(s) 783
MvnI CGCG 1 cut(s) 1252
MwoI GCNNNNNNNGC 2 cut(s) 86, 191
NcoI CCATGG 1 cut(s) 114
NdeII GATC 5 cut(s) 138, 493, 589, 1056, 1288
NlaIII CATG 9 cut(s) 118, 145, 669, 724, 800, 809, 1415, 1430, 1495
NlaIV GGNNCC 1 cut(s) 1005
NmuCI GTSAC 5 cut(s) 43, 164, 908, 914, 935
NspI RCATGY 3 cut(s) 800, 1415, 1495
PagI TCATGA 1 cut(s) 720
PauI GCGCGC 1 cut(s) 1250
PciI ACATGT 2 cut(s) 1411, 1491
PciSI GCTCTTC 1 cut(s) 87
PcsI WCGNNNNNNNCGW 1 cut(s) 169
PctI GAATGC 1 cut(s) 783
PdmI GAANNNNTTC 1 cut(s) 81
PfeI GAWTC 6 cut(s) 49, 56, 311, 404, 419, 802
PinAI ACCGGT 1 cut(s) 1312
PkrI GCNGC 2 cut(s) 1249, 1512
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
PscI ACATGT 2 cut(s) 1411, 1491
PsiI TTATAA 2 cut(s) 458, 701
Psp1406I AACGTT 1 cut(s) 1560
PspFI CCCAGC 2 cut(s) 222, 232
PspN4I GGNNCC 1 cut(s) 1005
PteI GCGCGC 1 cut(s) 1250
RsaI GTAC 4 cut(s) 175, 1364, 1451, 1547
RsaNI GTAC 4 cut(s) 174, 1363, 1450, 1546
RseI CAYNNNNRTG 1 cut(s) 501
SapI GCTCTTC 1 cut(s) 87
SaqAI TTAA 5 cut(s) 110, 432, 522, 1266, 1295
SatI GCNGC 2 cut(s) 1248, 1511
Sau3AI GATC 5 cut(s) 138, 493, 589, 1056, 1288
SchI GAGTC 1 cut(s) 51
SduI GDGCHC 1 cut(s) 730
SfaNI GCATC 4 cut(s) 854, 867, 1349, 1372
SfcI CTRYAG 1 cut(s) 1375
SmiMI CAYNNNNRTG 1 cut(s) 501
SsiI CCGC 2 cut(s) 185, 828
SspI AATATT 1 cut(s) 1128
SspMI CTAG 1 cut(s) 1404
StyI CCWWGG 3 cut(s) 114, 1367, 1565
TaaI ACNGT 4 cut(s) 173, 318, 914, 1454
TaiI ACGT 1 cut(s) 1563
TaqI TCGA 2 cut(s) 659, 1180
TatI WGTACW 1 cut(s) 1449
TfiI GAWTC 6 cut(s) 49, 56, 311, 404, 419, 802
Tru1I TTAA 5 cut(s) 110, 432, 522, 1266, 1295
Tru9I TTAA 5 cut(s) 110, 432, 522, 1266, 1295
TscAI CASTG 3 cut(s) 519, 919, 1288
TseFI GTSAC 5 cut(s) 43, 164, 908, 914, 935
TseI GCWGC 2 cut(s) 1247, 1510
Tsp45I GTSAC 5 cut(s) 43, 164, 908, 914, 935
TspDTI ATGAA 5 cut(s) 486, 654, 966, 987, 1494
TspGWI ACGGA 2 cut(s) 1350, 1460
TspRI CASTG 3 cut(s) 519, 919, 1288
XapI RAATTY 2 cut(s) 376, 620
XceI RCATGY 3 cut(s) 800, 1415, 1495
XcmI CCANNNNNNNNNTGG 1 cut(s) 219
XmnI GAANNNNTTC 1 cut(s) 81
XspI CTAG 1 cut(s) 1404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.