Prupe.1G033400_v2.0.a1

LOB domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0026704
Physical Location & Seq
Reverse (-)
2316907 .. 2317203
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G033400.1

Sequence Viewer

Length: 297 bp
ATGTCTGGTTTTCATATCCCATGTGGAGCCTGCAAATATTTGAGACGACAATGTGTGAGTGGCTGCATTTTTGCCCTGCATTTCAGAAATGAAGATGTTGCTGCCCATTTCGCACCTGTGCACATGGTTTTCGGCGCATCCATGATATCCAAGCTTTTATCTCATCTTGCCTTCAGCGATTGTTGTGGCACTGCGATGACGATAGCTTATGAAGCTCACGCCAGGCTTGAAGATCCTATATATGGATGCGTTTCGCAAATTTTTGCTCTCCAACAACAGGTTAATATCGAGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

99

Amino Acids

10.81

Weight (kDa)

6.56

Isoelectric Point (pI)

47.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0026704)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G31310
prunus_persica Prupe.1G033400_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 295
AclWI GGATC 1 cut(s) 227
AcsI RAATTY 1 cut(s) 258
AcuI CTGAAG 1 cut(s) 157
AfiI CCNNNNNNNGG 2 cut(s) 242, 277
AgsI TTSAA 1 cut(s) 230
AjnI CCWGG 1 cut(s) 221
AluBI AGCT 3 cut(s) 154, 206, 215
AluI AGCT 3 cut(s) 154, 206, 215
Alw21I GWGCWC 1 cut(s) 123
Alw26I GTCTC 1 cut(s) 37
Alw44I GTGCAC 1 cut(s) 119
AlwI GGATC 1 cut(s) 227
ApaLI GTGCAC 1 cut(s) 119
ApeKI GCWGC 2 cut(s) 63, 101
ApoI RAATTY 1 cut(s) 258
AspLEI GCGC 1 cut(s) 137
BaeGI GKGCMC 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 123
BbvI GCAGC 2 cut(s) 50, 88
BciT130I CCWGG 1 cut(s) 223
BcoDI GTCTC 1 cut(s) 37
BisI GCNGC 2 cut(s) 64, 102
BlsI GCNGC 2 cut(s) 65, 103
Bme1390I CCNGG 1 cut(s) 223
BmiI GGNNCC 1 cut(s) 28
BmrFI CCNGG 1 cut(s) 223
BmsI GCATC 2 cut(s) 146, 236
Bsc4I CCNNNNNNNGG 2 cut(s) 242, 277
BseBI CCWGG 1 cut(s) 223
BseGI GGATG 2 cut(s) 137, 251
BseLI CCNNNNNNNGG 2 cut(s) 242, 277
BseSI GKGCMC 1 cut(s) 123
BseXI GCAGC 2 cut(s) 50, 88
BsiHKAI GWGCWC 1 cut(s) 123
BslI CCNNNNNNNGG 2 cut(s) 242, 277
BsmAI GTCTC 1 cut(s) 37
BsmBI CGTCTC 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 123
Bsp143I GATC 1 cut(s) 232
BspLI GGNNCC 1 cut(s) 28
BspPI GGATC 1 cut(s) 227
BssMI GATC 1 cut(s) 232
Bst2UI CCWGG 1 cut(s) 223
BstC8I GCNNGC 1 cut(s) 31
BstF5I GGATG 2 cut(s) 137, 251
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 1 cut(s) 235
BstMAI GTCTC 1 cut(s) 37
BstMBI GATC 1 cut(s) 232
BstMWI GCNNNNNNNGC 2 cut(s) 110, 212
BstNI CCWGG 1 cut(s) 223
BstSCI CCNGG 1 cut(s) 221
BstSLI GKGCMC 1 cut(s) 123
BstV1I GCAGC 2 cut(s) 50, 88
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
BtgZI GCGATG 1 cut(s) 209
BtsCI GGATG 2 cut(s) 137, 251
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 1 cut(s) 189
Cac8I GCNNGC 1 cut(s) 31
CfoI GCGC 1 cut(s) 137
CviAII CATG 3 cut(s) 21, 124, 142
CviJI RGCY 6 cut(s) 29, 63, 154, 206, 215, 226
CviKI_1 RGCY 6 cut(s) 29, 63, 154, 206, 215, 226
DpnI GATC 1 cut(s) 234
DpnII GATC 1 cut(s) 232
Eco32I GATATC 1 cut(s) 147
Eco57I CTGAAG 1 cut(s) 157
EcoRII CCWGG 1 cut(s) 221
EcoRV GATATC 1 cut(s) 147
Esp3I CGTCTC 1 cut(s) 37
FaeI CATG 3 cut(s) 24, 127, 145
FaiI YATR 9 cut(s) 15, 22, 125, 143, 210, 239, 241, 243, 295
FatI CATG 3 cut(s) 20, 123, 141
Fnu4HI GCNGC 2 cut(s) 64, 102
FokI GGATG 2 cut(s) 124, 258
Fsp4HI GCNGC 2 cut(s) 64, 102
GlaI GCGC 1 cut(s) 136
GluI GCNGC 2 cut(s) 64, 102
HhaI GCGC 1 cut(s) 137
Hin1II CATG 3 cut(s) 24, 127, 145
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HindIII AAGCTT 1 cut(s) 152
Hpy166II GTNNAC 1 cut(s) 121
Hpy188I TCNGA 1 cut(s) 86
Hpy8I GTNNAC 1 cut(s) 121
HpyAV CCTTC 1 cut(s) 181
HpyCH4V TGCA 4 cut(s) 33, 66, 79, 121
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 212
Hsp92II CATG 3 cut(s) 24, 127, 145
HspAI GCGC 1 cut(s) 135
Kzo9I GATC 1 cut(s) 232
LmnI GCTCC 1 cut(s) 26
LpnPI CCDG 6 cut(s) 43, 89, 129, 208, 235, 263
Lsp1109I GCAGC 2 cut(s) 50, 88
LweI GCATC 2 cut(s) 146, 236
MalI GATC 1 cut(s) 234
MboI GATC 1 cut(s) 232
MboII GAAGA 2 cut(s) 104, 242
MflI RGATCY 1 cut(s) 232
MhlI GDGCHC 1 cut(s) 123
MluCI AATT 1 cut(s) 258
MmeI TCCRAC 1 cut(s) 295
MseI TTAA 1 cut(s) 282
MslI CAYNNNNRTG 1 cut(s) 194
MspR9I CCNGG 1 cut(s) 223
MvaI CCWGG 1 cut(s) 223
MwoI GCNNNNNNNGC 2 cut(s) 110, 212
NdeII GATC 1 cut(s) 232
NlaIII CATG 3 cut(s) 24, 127, 145
NlaIV GGNNCC 1 cut(s) 28
PkrI GCNGC 2 cut(s) 65, 103
PsiI TTATAA 1 cut(s) 295
Psp6I CCWGG 1 cut(s) 221
PspGI CCWGG 1 cut(s) 221
PspN4I GGNNCC 1 cut(s) 28
PsuI RGATCY 1 cut(s) 232
RseI CAYNNNNRTG 1 cut(s) 194
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 2 cut(s) 64, 102
Sau3AI GATC 1 cut(s) 232
ScrFI CCNGG 1 cut(s) 223
SduI GDGCHC 1 cut(s) 123
SetI ASST 5 cut(s) 118, 156, 208, 217, 282
SfaNI GCATC 2 cut(s) 146, 236
SmiMI CAYNNNNRTG 1 cut(s) 194
Sse9I AATT 1 cut(s) 258
SspI AATATT 1 cut(s) 38
StyD4I CCNGG 1 cut(s) 221
TaqI TCGA 1 cut(s) 288
TasI AATT 1 cut(s) 258
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TscAI CASTG 1 cut(s) 196
TseI GCWGC 2 cut(s) 63, 101
TspDTI ATGAA 2 cut(s) 105, 225
TspRI CASTG 1 cut(s) 196
VneI GTGCAC 1 cut(s) 119
XapI RAATTY 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.