Prupe.1G059900_v2.0.a1
BHLH Family

Transcription factor ABORTED

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
4237288 .. 4239560
2273 bp
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UTR
Exon/CDS
Intron
Prupe.1G059900.1

Sequence Viewer

Length: 285 bp
ATGAGCACTGAAATACAACCACAGCCCTTTCCAGGCAATGAGAATGAAGGAAATGATCATCTAAACAGTAATCATTTCCAGCAGTCGCCTGTTGTTTCCCCAGTGGATCATGATTCGAATGTGCCATACGACATATCAGTTGATCGAATCCTTCTCTGCTGCACTTCTCCGATGCATATCCTGCAACATGTCACTTACAACTCAGAGAACAGCATGAAGAATGTCCTTGTTCTTGTGAGAATTGATAATGCCCTTGTATTTGATAGAGGTCATGTGTTGAGCTGA

Protein Analysis

95

Amino Acids

10.57

Weight (kDa)

5.01

Isoelectric Point (pI)

75.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0024594)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 114
AfiI CCNNNNNNNGG 1 cut(s) 32
AflIII ACRYGT 1 cut(s) 187
AjnI CCWGG 1 cut(s) 31
AluBI AGCT 1 cut(s) 282
AluI AGCT 1 cut(s) 282
Alw21I GWGCWC 1 cut(s) 8
AlwI GGATC 1 cut(s) 114
ApeKI GCWGC 1 cut(s) 159
AsuII TTCGAA 1 cut(s) 116
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 1 cut(s) 146
BciT130I CCWGG 1 cut(s) 33
BclI TGATCA 1 cut(s) 55
BisI GCNGC 1 cut(s) 160
BlsI GCNGC 1 cut(s) 161
Bme1390I CCNGG 1 cut(s) 33
BmrFI CCNGG 1 cut(s) 33
BmrI ACTGGG 1 cut(s) 95
BmsI GCATC 1 cut(s) 162
BmuI ACTGGG 1 cut(s) 95
Bpu14I TTCGAA 1 cut(s) 116
BsaBI GATNNNNATC 1 cut(s) 176
Bsc4I CCNNNNNNNGG 1 cut(s) 32
Bse1I ACTGG 1 cut(s) 101
Bse3DI GCAATG 1 cut(s) 43
Bse8I GATNNNNATC 1 cut(s) 176
BseBI CCWGG 1 cut(s) 33
BseJI GATNNNNATC 1 cut(s) 176
BseLI CCNNNNNNNGG 1 cut(s) 32
BseMI GCAATG 1 cut(s) 43
BseMII CTCAG 1 cut(s) 216
BseNI ACTGG 1 cut(s) 101
BseXI GCAGC 1 cut(s) 146
BsgI GTGCAG 1 cut(s) 145
BsiHKAI GWGCWC 1 cut(s) 8
BslI CCNNNNNNNGG 1 cut(s) 32
Bsp119I TTCGAA 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 3 cut(s) 55, 106, 142
BspCNI CTCAG 1 cut(s) 215
BspHI TCATGA 1 cut(s) 109
BspPI GGATC 1 cut(s) 114
BspT104I TTCGAA 1 cut(s) 116
BsrDI GCAATG 1 cut(s) 43
BsrI ACTGG 1 cut(s) 101
BssMI GATC 3 cut(s) 55, 106, 142
Bst2UI CCWGG 1 cut(s) 33
Bst4CI ACNGT 1 cut(s) 68
BstAPI GCANNNNNTGC 1 cut(s) 181
BstBI TTCGAA 1 cut(s) 116
BstDEI CTNAG 1 cut(s) 202
BstKTI GATC 3 cut(s) 58, 109, 145
BstMBI GATC 3 cut(s) 55, 106, 142
BstMWI GCNNNNNNNGC 1 cut(s) 181
BstNI CCWGG 1 cut(s) 33
BstNSI RCATGY 1 cut(s) 191
BstSCI CCNGG 1 cut(s) 31
BstV1I GCAGC 1 cut(s) 146
BtsIMutI CAGTG 2 cut(s) 6, 108
CciI TCATGA 1 cut(s) 109
CviAII CATG 4 cut(s) 110, 188, 214, 272
CviJI RGCY 2 cut(s) 25, 282
CviKI_1 RGCY 2 cut(s) 25, 282
DdeI CTNAG 1 cut(s) 202
DpnI GATC 3 cut(s) 57, 108, 144
DpnII GATC 3 cut(s) 55, 106, 142
EcoRII CCWGG 1 cut(s) 31
EcoT22I ATGCAT 1 cut(s) 177
FaeI CATG 4 cut(s) 113, 191, 217, 275
FaiI YATR 7 cut(s) 111, 127, 134, 177, 189, 215, 273
FatI CATG 4 cut(s) 109, 187, 213, 271
FbaI TGATCA 1 cut(s) 55
Fnu4HI GCNGC 1 cut(s) 160
Fsp4HI GCNGC 1 cut(s) 160
GluI GCNGC 1 cut(s) 160
Hin1II CATG 4 cut(s) 113, 191, 217, 275
HinfI GANTC 2 cut(s) 113, 147
Hpy188I TCNGA 2 cut(s) 171, 205
Hpy188III TCNNGA 1 cut(s) 110
HpyAV CCTTC 2 cut(s) 41, 161
HpyCH4III ACNGT 1 cut(s) 68
HpyCH4V TGCA 3 cut(s) 162, 175, 184
HpyF10VI GCNNNNNNNGC 1 cut(s) 181
HpyF3I CTNAG 1 cut(s) 202
Hsp92II CATG 4 cut(s) 113, 191, 217, 275
Ksp22I TGATCA 1 cut(s) 55
Kzo9I GATC 3 cut(s) 55, 106, 142
LpnPI CCDG 6 cut(s) 18, 45, 92, 102, 114, 194
Lsp1109I GCAGC 1 cut(s) 146
LweI GCATC 1 cut(s) 162
MaeIII GTNAC 1 cut(s) 190
MalI GATC 3 cut(s) 57, 108, 144
MboI GATC 3 cut(s) 55, 106, 142
MboII GAAGA 1 cut(s) 229
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 1 cut(s) 240
MnlI CCTC 1 cut(s) 260
Mph1103I ATGCAT 1 cut(s) 177
MspR9I CCNGG 1 cut(s) 33
MvaI CCWGG 1 cut(s) 33
MwoI GCNNNNNNNGC 1 cut(s) 181
NdeII GATC 3 cut(s) 55, 106, 142
NlaIII CATG 4 cut(s) 113, 191, 217, 275
NmuCI GTSAC 1 cut(s) 190
NsiI ATGCAT 1 cut(s) 177
NspI RCATGY 1 cut(s) 191
NspV TTCGAA 1 cut(s) 116
PagI TCATGA 1 cut(s) 109
PciI ACATGT 1 cut(s) 187
PfeI GAWTC 2 cut(s) 113, 147
PkrI GCNGC 1 cut(s) 161
PscI ACATGT 1 cut(s) 187
Psp6I CCWGG 1 cut(s) 31
PspGI CCWGG 1 cut(s) 31
SatI GCNGC 1 cut(s) 160
Sau3AI GATC 3 cut(s) 55, 106, 142
ScrFI CCNGG 1 cut(s) 33
SduI GDGCHC 1 cut(s) 8
SetI ASST 2 cut(s) 271, 284
SfaNI GCATC 1 cut(s) 162
SfuI TTCGAA 1 cut(s) 116
Sse9I AATT 1 cut(s) 240
StyD4I CCNGG 1 cut(s) 31
TaaI ACNGT 1 cut(s) 68
TaqI TCGA 2 cut(s) 116, 145
TasI AATT 1 cut(s) 240
TfiI GAWTC 2 cut(s) 113, 147
TscAI CASTG 2 cut(s) 13, 108
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 1 cut(s) 159
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 2 cut(s) 60, 230
TspRI CASTG 2 cut(s) 13, 108
XceI RCATGY 1 cut(s) 191
Zsp2I ATGCAT 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.