Prupe.1G081000_v2.0.a1

Plant family of unknown function (DUF810)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0029173
Physical Location & Seq
Reverse (-)
5937673 .. 5938727
1055 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G081000.1

Sequence Viewer

Length: 1032 bp
ATGGCTCAGATTCTCAGAGACAGAGCATTTGGAAATTCAAAAAGACACAGCCAACGCCATAATCCAATCCAAACCACCATGCCCGTATACCCAGTTGAAGACATCCCCAACCCATTTGGCGAACTGGGTCCGAACCTCTCCGACTCGGAGCTCCGAGAAACCGTCTACGAGATCTTAGTCGAAGCCTGCCGGAGCTCTGGAGCCAAACCGCTTACTTACATCCCGCAGTCCGAGAAGACCGACCGGTCCGACCGGACTACTCTGACTTCATTGCCATCATCGTTTCAGAGGTCGACGTCATCAGCGGCGAGCCGGGTCAAGAAGGCTCTGGGTTTGAAGCAAACGGCATCGTCTAGGAGGAGGCTCGGTGATGGTGATTCAGTGAGTCAGGGGAAGACTAAGCGGTCTGGGACGGTTTGGGAGCTGATGAGGTTTCAGATGAGGGTTTCGGAGCAGACTGATACCAGGGTCAGGAGAGCCCTTTTAAGGGTTGCTGCTGGTCAGCTTGGAAAGCGTATAGAGTGCATGGTTTTGCCTCTTGAGCTACTACAGCAGTTCAAGTCTTCAGATTTTCCCAGTCAGCAAGAATATGAAGGCTGGCAGAGGAGAAATTTGAAGGTTCTTGATGCAGGGCTTCTTTTATATCCTTCTTTGCCTTTAGATAAGAAAGACACTGCTCCTCAACAGCTCCAGAAGATTATTCGTGGGGCCTTAGAGAAACCCATAGAAACTGGAAAGCACAATGAGTCGATGCAAGTTCTCCGCGGTGTTGTCATGCCTCTTGCTTGCAGATCATTTGATGGTTCTGTTTCTGACACATGCCACAAAGGCATGAGTGAAACCAGTAGCAGCAAACTAGACCAGGGTATAGAGAAGAAGAAGCTCTCTACCCAGAAGAAGCAGAAGTACGCTTATATCCCTGACAACTTTTCAACCCTGGAACAGGGCTTCAATGGCTGTGGTGGAGAGAATATGCTGTCGAGCACGCATGATCACAGCCCCCACCTACGATATGTTGTCGAGTGCGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF810

Protein Analysis

344

Amino Acids

38.41

Weight (kDa)

9.48

Isoelectric Point (pI)

67.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029173)

Species Orthologous Gene IDs
prunus_persica Prupe.1G081000_v2.0.a1
pyrus_communis pycom02g04950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 244, 403
AatII GACGTC 1 cut(s) 299
Acc16I TGCGCA 1 cut(s) 1027
AccI GTMKAC 3 cut(s) 87, 165, 293
AccII CGCG 1 cut(s) 765
AciI CCGC 6 cut(s) 209, 224, 305, 403, 763, 765
AcsI RAATTY 2 cut(s) 34, 610
AcuI CTGAAG 1 cut(s) 549
AcyI GRCGYC 1 cut(s) 296
AfaI GTAC 1 cut(s) 908
AfiI CCNNNNNNNGG 4 cut(s) 471, 486, 487, 943
AgeI ACCGGT 1 cut(s) 243
AgsI TTSAA 7 cut(s) 39, 98, 337, 559, 616, 933, 952
AjnI CCWGG 3 cut(s) 464, 861, 936
AluBI AGCT 7 cut(s) 151, 195, 424, 505, 544, 688, 883
AluI AGCT 7 cut(s) 151, 195, 424, 505, 544, 688, 883
Alw21I GWGCWC 3 cut(s) 153, 197, 986
Alw26I GTCTC 1 cut(s) 12
AoxI GGCC 1 cut(s) 708
ApeKI GCWGC 2 cut(s) 494, 849
ApoI RAATTY 2 cut(s) 34, 610
ArsI GACNNNNNNTTYG 2 cut(s) 11, 43
AsiGI ACCGGT 1 cut(s) 243
AspLEI GCGC 1 cut(s) 1028
AspS9I GGNCC 3 cut(s) 128, 246, 708
AsuC2I CCSGG 1 cut(s) 314
AsuHPI GGTGA 2 cut(s) 380, 386
AvaII GGWCC 2 cut(s) 128, 246
BaeI ACNNNNGTAYC 2 cut(s) 453, 486
BanII GRGCYC 3 cut(s) 153, 197, 481
BarI GAAGNNNNNNTAC 2 cut(s) 890, 922
BbsI GAAGAC 4 cut(s) 105, 242, 401, 555
Bbv12I GWGCWC 3 cut(s) 153, 197, 986
BbvI GCAGC 2 cut(s) 481, 861
BccI CCATC 3 cut(s) 283, 365, 794
BceAI ACGGC 1 cut(s) 360
BciT130I CCWGG 3 cut(s) 466, 863, 938
BclI TGATCA 1 cut(s) 991
BcnI CCSGG 1 cut(s) 314
BcoDI GTCTC 1 cut(s) 12
BfaI CTAG 2 cut(s) 354, 857
BfmI CTRYAG 1 cut(s) 548
BglI GCCNNNNNGGC 1 cut(s) 828
BglII AGATCT 1 cut(s) 171
BisI GCNGC 3 cut(s) 306, 495, 850
BlsI GCNGC 3 cut(s) 307, 496, 851
Bme1390I CCNGG 4 cut(s) 314, 466, 863, 938
Bme18I GGWCC 2 cut(s) 128, 246
BmgT120I GGNCC 3 cut(s) 128, 246, 708
BmiI GGNNCC 3 cut(s) 129, 202, 709
BmrFI CCNGG 4 cut(s) 314, 466, 863, 938
BmrI ACTGGG 3 cut(s) 86, 134, 570
BmsI GCATC 3 cut(s) 356, 616, 741
BmuI ACTGGG 3 cut(s) 86, 134, 570
BpiI GAAGAC 4 cut(s) 105, 242, 401, 555
BpmI CTGGAG 2 cut(s) 219, 674
BpuEI CTTGAG 1 cut(s) 560
BpuMI CCSGG 1 cut(s) 314
BsaHI GRCGYC 1 cut(s) 296
BsaJI CCNNGG 4 cut(s) 465, 763, 862, 936
BsaWI WCCGGW 2 cut(s) 243, 252
BsaXI ACNNNNNCTCC 2 cut(s) 352, 382
Bsc4I CCNNNNNNNGG 4 cut(s) 471, 486, 487, 943
Bse118I RCCGGY 1 cut(s) 243
Bse1I ACTGG 5 cut(s) 92, 129, 576, 736, 843
Bse3DI GCAATG 1 cut(s) 269
BseBI CCWGG 3 cut(s) 466, 863, 938
BseDI CCNNGG 4 cut(s) 465, 763, 862, 936
BseGI GGATG 2 cut(s) 102, 219
BseLI CCNNNNNNNGG 4 cut(s) 471, 486, 487, 943
BseMI GCAATG 1 cut(s) 269
BseMII CTCAG 2 cut(s) 20, 28
BseNI ACTGG 5 cut(s) 92, 129, 576, 736, 843
BseRI GAGGAG 3 cut(s) 373, 619, 669
BseXI GCAGC 2 cut(s) 481, 861
Bsh1236I CGCG 1 cut(s) 765
Bsh1285I CGRYCG 2 cut(s) 244, 253
BshFI GGCC 1 cut(s) 710
BshTI ACCGGT 1 cut(s) 243
BsiEI CGRYCG 2 cut(s) 244, 253
BsiHKAI GWGCWC 3 cut(s) 153, 197, 986
BsiSI CCGG 4 cut(s) 190, 244, 253, 313
BslFI GGGAC 1 cut(s) 424
BslI CCNNNNNNNGG 4 cut(s) 471, 486, 487, 943
BsmAI GTCTC 1 cut(s) 12
BsmFI GGGAC 1 cut(s) 424
BsnI GGCC 1 cut(s) 710
Bsp1286I GDGCHC 4 cut(s) 153, 197, 481, 986
Bsp143I GATC 3 cut(s) 171, 791, 991
BspACI CCGC 6 cut(s) 209, 224, 305, 403, 763, 765
BspANI GGCC 1 cut(s) 710
BspCNI CTCAG 2 cut(s) 19, 27
BspFNI CGCG 1 cut(s) 765
BspLI GGNNCC 3 cut(s) 129, 202, 709
BsrDI GCAATG 1 cut(s) 269
BsrFI RCCGGY 1 cut(s) 243
BsrI ACTGG 5 cut(s) 92, 129, 576, 736, 843
BssAI RCCGGY 1 cut(s) 243
BssECI CCNNGG 4 cut(s) 465, 763, 862, 936
BssMI GATC 3 cut(s) 171, 791, 991
BssNAI GTATAC 1 cut(s) 88
BssNI GRCGYC 1 cut(s) 296
Bst1107I GTATAC 1 cut(s) 88
Bst2UI CCWGG 3 cut(s) 466, 863, 938
Bst4CI ACNGT 2 cut(s) 163, 415
BstACI GRCGYC 1 cut(s) 296
BstC8I GCNNGC 5 cut(s) 187, 310, 599, 787, 986
BstDEI CTNAG 5 cut(s) 6, 14, 175, 399, 712
BstDSI CCRYGG 1 cut(s) 763
BstENI CCTNNNNNAGG 1 cut(s) 941
BstF5I GGATG 2 cut(s) 102, 219
BstFNI CGCG 1 cut(s) 765
BstHHI GCGC 1 cut(s) 1028
BstKTI GATC 3 cut(s) 174, 794, 994
BstMAI GTCTC 1 cut(s) 12
BstMBI GATC 3 cut(s) 171, 791, 991
BstMCI CGRYCG 2 cut(s) 244, 253
BstMWI GCNNNNNNNGC 5 cut(s) 511, 541, 550, 828, 954
BstNI CCWGG 3 cut(s) 466, 863, 938
BstNSI RCATGY 1 cut(s) 822
BstSCI CCNGG 4 cut(s) 312, 464, 861, 936
BstSFI CTRYAG 1 cut(s) 548
BstUI CGCG 1 cut(s) 765
BstV1I GCAGC 2 cut(s) 481, 861
BstV2I GAAGAC 4 cut(s) 105, 242, 401, 555
BstX2I RGATCY 1 cut(s) 171
BstYI RGATCY 1 cut(s) 171
BstZ17I GTATAC 1 cut(s) 88
BsuRI GGCC 1 cut(s) 710
BtgI CCRYGG 1 cut(s) 763
BtsCI GGATG 2 cut(s) 102, 219
BtsI GCAGTG 1 cut(s) 672
BtsIMutI CAGTG 2 cut(s) 387, 672
Cac8I GCNNGC 5 cut(s) 187, 310, 599, 787, 986
CfoI GCGC 1 cut(s) 1028
Cfr10I RCCGGY 1 cut(s) 243
Cfr13I GGNCC 3 cut(s) 128, 246, 708
Cfr42I CCGCGG 1 cut(s) 766
CpoI CGGWCCG 1 cut(s) 246
Csp6I GTAC 1 cut(s) 907
CspAI ACCGGT 1 cut(s) 243
CspCI CAANNNNNGTGG 2 cut(s) 940, 975
CspI CGGWCCG 1 cut(s) 246
CviAII CATG 7 cut(s) 79, 526, 775, 819, 832, 989, 1029
CviQI GTAC 1 cut(s) 907
DdeI CTNAG 5 cut(s) 6, 14, 175, 399, 712
DpnI GATC 3 cut(s) 173, 793, 993
DpnII GATC 3 cut(s) 171, 791, 991
DrdI GACNNNNNNGTC 2 cut(s) 244, 403
DseDI GACNNNNNNGTC 2 cut(s) 244, 403
Ecl136II GAGCTC 2 cut(s) 151, 195
Eco24I GRGCYC 3 cut(s) 153, 197, 481
Eco47I GGWCC 2 cut(s) 128, 246
Eco53kI GAGCTC 2 cut(s) 151, 195
Eco57I CTGAAG 1 cut(s) 549
EcoICRI GAGCTC 2 cut(s) 151, 195
EcoNI CCTNNNNNAGG 1 cut(s) 941
EcoO109I RGGNCCY 1 cut(s) 708
EcoRII CCWGG 3 cut(s) 464, 861, 936
EcoT38I GRGCYC 3 cut(s) 153, 197, 481
FaeI CATG 7 cut(s) 82, 529, 778, 822, 835, 992, 1032
FaqI GGGAC 1 cut(s) 424
FatI CATG 7 cut(s) 78, 525, 774, 818, 831, 988, 1028
FauI CCCGC 1 cut(s) 231
FbaI TGATCA 1 cut(s) 991
FblI GTMKAC 3 cut(s) 87, 165, 293
Fnu4HI GCNGC 3 cut(s) 306, 495, 850
FokI GGATG 2 cut(s) 89, 206
FriOI GRGCYC 3 cut(s) 153, 197, 481
Fsp4HI GCNGC 3 cut(s) 306, 495, 850
FspAI RTGCGCAY 1 cut(s) 1027
FspBI CTAG 2 cut(s) 354, 857
FspI TGCGCA 1 cut(s) 1027
GlaI GCGC 1 cut(s) 1027
GluI GCNGC 3 cut(s) 306, 495, 850
GsuI CTGGAG 2 cut(s) 219, 674
HaeIII GGCC 1 cut(s) 710
HapII CCGG 4 cut(s) 190, 244, 253, 313
HhaI GCGC 1 cut(s) 1028
Hin1I GRCGYC 1 cut(s) 296
Hin1II CATG 7 cut(s) 82, 529, 778, 822, 835, 992, 1032
Hin6I GCGC 1 cut(s) 1026
HinP1I GCGC 1 cut(s) 1026
HincII GTYRAC 1 cut(s) 294
HindII GTYRAC 1 cut(s) 294
HinfI GANTC 5 cut(s) 10, 143, 377, 385, 746
HpaII CCGG 4 cut(s) 190, 244, 253, 313
HphI GGTGA 2 cut(s) 380, 386
Hpy166II GTNNAC 3 cut(s) 88, 166, 294
Hpy188III TCNNGA 6 cut(s) 198, 319, 472, 539, 623, 691
Hpy8I GTNNAC 3 cut(s) 88, 166, 294
Hpy99I CGWCG 1 cut(s) 298
HpyAV CCTTC 4 cut(s) 316, 587, 610, 657
HpyCH4III ACNGT 2 cut(s) 163, 415
HpyCH4IV ACGT 1 cut(s) 296
HpyCH4V TGCA 4 cut(s) 525, 629, 754, 789
HpyF10VI GCNNNNNNNGC 5 cut(s) 511, 541, 550, 828, 954
HpyF3I CTNAG 5 cut(s) 6, 14, 175, 399, 712
HpySE526I ACGT 1 cut(s) 296
Hsp92I GRCGYC 1 cut(s) 296
Hsp92II CATG 7 cut(s) 82, 529, 778, 822, 835, 992, 1032
HspAI GCGC 1 cut(s) 1026
Ksp22I TGATCA 1 cut(s) 991
KspI CCGCGG 1 cut(s) 766
Kzo9I GATC 3 cut(s) 171, 791, 991
LmnI GCTCC 8 cut(s) 148, 156, 192, 200, 421, 451, 682, 693
Lsp1109I GCAGC 2 cut(s) 481, 861
LweI GCATC 3 cut(s) 356, 616, 741
MaeI CTAG 2 cut(s) 354, 857
MaeII ACGT 1 cut(s) 296
MalI GATC 3 cut(s) 173, 793, 993
MboI GATC 3 cut(s) 171, 791, 991
MboII GAAGA 8 cut(s) 110, 247, 406, 555, 706, 886, 889, 907
MflI RGATCY 1 cut(s) 171
MhlI GDGCHC 4 cut(s) 153, 197, 481, 986
MluCI AATT 2 cut(s) 34, 610
MlyI GAGTC 3 cut(s) 137, 394, 755
MmeI TCCRAC 2 cut(s) 165, 273
MseI TTAA 1 cut(s) 485
MspA1I CMGCKG 2 cut(s) 305, 765
MspI CCGG 4 cut(s) 190, 244, 253, 313
MspR9I CCNGG 4 cut(s) 314, 466, 863, 938
MvaI CCWGG 3 cut(s) 466, 863, 938
MvnI CGCG 1 cut(s) 765
MwoI GCNNNNNNNGC 5 cut(s) 511, 541, 550, 828, 954
NciI CCSGG 1 cut(s) 314
NdeII GATC 3 cut(s) 171, 791, 991
NlaIII CATG 7 cut(s) 82, 529, 778, 822, 835, 992, 1032
NlaIV GGNNCC 3 cut(s) 129, 202, 709
NsbI TGCGCA 1 cut(s) 1027
NspI RCATGY 1 cut(s) 822
PfeI GAWTC 2 cut(s) 10, 377
PinAI ACCGGT 1 cut(s) 243
PkrI GCNGC 3 cut(s) 307, 496, 851
PleI GAGTC 3 cut(s) 137, 393, 754
PpsI GAGTC 3 cut(s) 137, 393, 754
Psp124BI GAGCTC 2 cut(s) 153, 197
Psp6I CCWGG 3 cut(s) 464, 861, 936
PspGI CCWGG 3 cut(s) 464, 861, 936
PspN4I GGNNCC 3 cut(s) 129, 202, 709
PspPI GGNCC 3 cut(s) 128, 246, 708
PsuI RGATCY 1 cut(s) 171
RsaI GTAC 1 cut(s) 908
RsaNI GTAC 1 cut(s) 907
Rsr2I CGGWCCG 1 cut(s) 246
RsrII CGGWCCG 1 cut(s) 246
SacI GAGCTC 2 cut(s) 153, 197
SacII CCGCGG 1 cut(s) 766
SalI GTCGAC 1 cut(s) 292
SaqAI TTAA 1 cut(s) 485
SatI GCNGC 3 cut(s) 306, 495, 850
Sau3AI GATC 3 cut(s) 171, 791, 991
Sau96I GGNCC 3 cut(s) 128, 246, 708
SchI GAGTC 3 cut(s) 137, 394, 755
ScrFI CCNGG 4 cut(s) 314, 466, 863, 938
SduI GDGCHC 4 cut(s) 153, 197, 481, 986
SfaNI GCATC 3 cut(s) 356, 616, 741
SfcI CTRYAG 1 cut(s) 548
Sfr303I CCGCGG 1 cut(s) 766
SgrBI CCGCGG 1 cut(s) 766
SinI GGWCC 2 cut(s) 128, 246
SmlI CTYRAG 1 cut(s) 539
SmoI CTYRAG 1 cut(s) 539
Sse9I AATT 2 cut(s) 34, 610
SsiI CCGC 6 cut(s) 209, 224, 305, 403, 763, 765
SspMI CTAG 2 cut(s) 354, 857
SstI GAGCTC 2 cut(s) 153, 197
StyD4I CCNGG 4 cut(s) 312, 464, 861, 936
TaaI ACNGT 2 cut(s) 163, 415
TaiI ACGT 1 cut(s) 299
TaqI TCGA 5 cut(s) 180, 293, 749, 980, 1020
TaqII GACCGA 1 cut(s) 254
TasI AATT 2 cut(s) 34, 610
TauI GCSGC 1 cut(s) 308
TfiI GAWTC 2 cut(s) 10, 377
Tru1I TTAA 1 cut(s) 485
Tru9I TTAA 1 cut(s) 485
TscAI CASTG 2 cut(s) 387, 679
TseI GCWGC 2 cut(s) 494, 849
TspDTI ATGAA 2 cut(s) 258, 606
TspRI CASTG 2 cut(s) 387, 679
VpaK11BI GGWCC 2 cut(s) 128, 246
XagI CCTNNNNNAGG 1 cut(s) 941
XapI RAATTY 2 cut(s) 34, 610
XceI RCATGY 1 cut(s) 822
XmiI GTMKAC 3 cut(s) 87, 165, 293
XspI CTAG 2 cut(s) 354, 857
ZraI GACGTC 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.