pycom02g04950

Plant family of unknown function (DUF810)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0029173
Physical Location & Seq
Forward (+)
3257266 .. 3258677
1412 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g04950.1

Sequence Viewer

Length: 1059 bp
ATGGCTCAGATTCTCAGAGACAGAGTATTCGGAAGCTCCAGACGACACTCCCAAAACTCCAATCCAATTCCAATTCCAATTCCAATCCAACCCGCCATGCCCTTTCACCCAGTTGAAGCCCTCCCCAACCCCTTTGGGGAACTGGGTCCGACACTCTCGGACTCGGAGCTCCGGGAAACCGTCTACGAGATCTTGGTCGGAGCCTGCCGGAGCTCCGGGCCCAAACCTCTCACCTACATCCCACAGTCCGAGAAGACGGACCGGAGTACTCTGACTTCGCTCCCGTCGTCGCTTCAGAGGTCGACGTCGTCGGCGGCGAGCCGGGTCAAGAAGGCGCTGGGTTTGAAGTCGTCGTCTGGCAGGAGACTCAGTGGCGGTGACTCAGTGAGCCAGGGGAGGAGTAAGCGGACCGGGACGGTTTGGGAGCTCGTGAGAGTACAGATGAAGGTTTCGGAGCGGACTGATTCGAGGGTCCGGAGAGCGCTTTTGAGGGTTGCTGCTGGTCAGCTTGGACGGCGAGTAGAATGCATGGTATTGCCCCTTGAGCTATTACAGCAGTTCAAGTCTTCGGATTTTCCTAACCAACAAGAATATGAAGCTTGGCAGAGGAGAAACTTGAGGGTTCTCGAAGCCGGCCTTCTTTTGTATCCTTATTTGCCTTTAGATAAGAGAGACACTGCTTCTCAACAACTCCGGAAGATTATTCATGGGGCCTTAGATAAACCCATAGAAACTGGAAAGCACACTGAGTCGATGCAAGTTCTTCGCAATGCTGTTATGTCTCTTGCTAACAGATCAGTTGACGGTTCTGTTTCCGAGACGTGCCACTGGGCAGATGGGTTTCCGTTGAACCTGAGGCTCTACCAAATGCTACTAGAATCGTGTTTTGACCCGAATGAAGAAACATCTGTTATTGAAGAGCTTGATGAGGTTTTCGACCTCATAAAGAAGACCTGGGTAGTTCTCGGAATAAATCAAATGCTGCATTTCATTTGTGATCGATCTTTGTTTCTCATGGGTTTTATTTCATCGTTATGTTACAACTGGCCAAGTGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF810

Protein Analysis

353

Amino Acids

39.54

Weight (kDa)

9.13

Isoelectric Point (pI)

63.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029173)

Species Orthologous Gene IDs
prunus_persica Prupe.1G081000_v2.0.a1
pyrus_communis pycom02g04950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 308
AccBSI CCGCTC 1 cut(s) 457
AccI GTMKAC 2 cut(s) 183, 302
AccIII TCCGGA 2 cut(s) 474, 693
AciI CCGC 5 cut(s) 93, 314, 375, 406, 457
AcoI YGGCCR 1 cut(s) 1046
AcuI CTGAAG 1 cut(s) 278
AcyI GRCGYC 1 cut(s) 305
AfaI GTAC 2 cut(s) 268, 438
AfeI AGCGCT 1 cut(s) 483
AfiI CCNNNNNNNGG 1 cut(s) 136
AgsI TTSAA 5 cut(s) 116, 346, 562, 850, 917
AjiI CACGTC 1 cut(s) 822
AjnI CCWGG 2 cut(s) 390, 953
AluBI AGCT 8 cut(s) 36, 169, 213, 427, 508, 547, 599, 922
AluI AGCT 8 cut(s) 36, 169, 213, 427, 508, 547, 599, 922
Alw21I GWGCWC 3 cut(s) 171, 215, 429
Alw26I GTCTC 5 cut(s) 12, 358, 666, 786, 812
Aor13HI TCCGGA 2 cut(s) 474, 693
Aor51HI AGCGCT 1 cut(s) 483
AoxI GGCC 4 cut(s) 218, 634, 711, 1046
ApaI GGGCCC 1 cut(s) 222
ApeKI GCWGC 2 cut(s) 497, 982
ArsI GACNNNNNNTTYG 2 cut(s) 11, 43
AspLEI GCGC 2 cut(s) 337, 484
AspS9I GGNCC 7 cut(s) 146, 218, 219, 259, 408, 472, 711
AsuC2I CCSGG 4 cut(s) 173, 217, 323, 412
AsuHPI GGTGA 3 cut(s) 98, 223, 389
AvaII GGWCC 4 cut(s) 146, 259, 408, 472
AxyI CCTNAGG 1 cut(s) 854
BaeGI GKGCMC 1 cut(s) 222
BalI TGGCCA 1 cut(s) 1048
BanII GRGCYC 4 cut(s) 171, 215, 222, 429
BarI GAAGNNNNNNTAC 2 cut(s) 259, 291
BauI CACGAG 1 cut(s) 428
BbsI GAAGAC 3 cut(s) 260, 558, 956
Bbv12I GWGCWC 3 cut(s) 171, 215, 429
BbvI GCAGC 2 cut(s) 484, 969
BccI CCATC 1 cut(s) 830
BceAI ACGGC 1 cut(s) 530
BcgI CGANNNNNNTGC 4 cut(s) 507, 541, 746, 780
BciT130I CCWGG 2 cut(s) 392, 955
BciVI GTATCC 1 cut(s) 657
BcnI CCSGG 4 cut(s) 173, 217, 323, 412
BcoDI GTCTC 5 cut(s) 12, 358, 666, 786, 812
BfaI CTAG 1 cut(s) 875
BfoI RGCGCY 2 cut(s) 338, 485
BfuI GTATCC 1 cut(s) 657
BglII AGATCT 1 cut(s) 189
BisI GCNGC 3 cut(s) 315, 498, 983
BlsI GCNGC 3 cut(s) 316, 499, 984
BmcAI AGTACT 1 cut(s) 268
Bme1390I CCNGG 6 cut(s) 173, 217, 323, 392, 412, 955
Bme18I GGWCC 4 cut(s) 146, 259, 408, 472
BmgBI CACGTC 1 cut(s) 822
BmgT120I GGNCC 7 cut(s) 146, 218, 219, 259, 408, 472, 711
BmiI GGNNCC 5 cut(s) 147, 202, 220, 473, 712
BmrFI CCNGG 6 cut(s) 173, 217, 323, 392, 412, 955
BmrI ACTGGG 3 cut(s) 104, 152, 838
BmsI GCATC 1 cut(s) 744
BmuI ACTGGG 3 cut(s) 104, 152, 838
BpiI GAAGAC 3 cut(s) 260, 558, 956
BpmI CTGGAG 1 cut(s) 22
BpuEI CTTGAG 2 cut(s) 563, 637
BpuMI CCSGG 4 cut(s) 173, 217, 323, 412
Bsa29I ATCGAT 1 cut(s) 1000
BsaHI GRCGYC 1 cut(s) 305
BsaJI CCNNGG 2 cut(s) 391, 954
BsaWI WCCGGW 3 cut(s) 261, 474, 693
BsaXI ACNNNNNCTCC 2 cut(s) 355, 385
Bsc4I CCNNNNNNNGG 1 cut(s) 136
Bse118I RCCGGY 1 cut(s) 632
Bse1I ACTGG 5 cut(s) 110, 147, 739, 833, 1049
Bse21I CCTNAGG 1 cut(s) 854
Bse3DI GCAATG 1 cut(s) 775
BseAI TCCGGA 2 cut(s) 474, 693
BseBI CCWGG 2 cut(s) 392, 955
BseCI ATCGAT 1 cut(s) 1000
BseDI CCNNGG 2 cut(s) 391, 954
BseGI GGATG 1 cut(s) 237
BseLI CCNNNNNNNGG 1 cut(s) 136
BseMI GCAATG 1 cut(s) 775
BseMII CTCAG 6 cut(s) 20, 28, 382, 396, 738, 845
BseNI ACTGG 5 cut(s) 110, 147, 739, 833, 1049
BseRI GAGGAG 2 cut(s) 412, 622
BseSI GKGCMC 1 cut(s) 222
BseXI GCAGC 2 cut(s) 484, 969
BseYI CCCAGC 1 cut(s) 337
BshFI GGCC 4 cut(s) 220, 636, 713, 1048
BshVI ATCGAT 1 cut(s) 1000
BsiHKAI GWGCWC 3 cut(s) 171, 215, 429
BsiSI CCGG 9 cut(s) 172, 208, 216, 262, 322, 411, 475, 633, 694
BslFI GGGAC 1 cut(s) 427
BslI CCNNNNNNNGG 1 cut(s) 136
BsmAI GTCTC 5 cut(s) 12, 358, 666, 786, 812
BsmBI CGTCTC 1 cut(s) 812
BsmFI GGGAC 1 cut(s) 427
BsmI GAATGC 1 cut(s) 530
BsnI GGCC 4 cut(s) 220, 636, 713, 1048
Bsp120I GGGCCC 1 cut(s) 218
Bsp1286I GDGCHC 4 cut(s) 171, 215, 222, 429
Bsp13I TCCGGA 2 cut(s) 474, 693
Bsp143I GATC 4 cut(s) 189, 794, 997, 1001
BspACI CCGC 5 cut(s) 93, 314, 375, 406, 457
BspANI GGCC 4 cut(s) 220, 636, 713, 1048
BspCNI CTCAG 6 cut(s) 19, 27, 381, 395, 739, 846
BspDI ATCGAT 1 cut(s) 1000
BspEI TCCGGA 2 cut(s) 474, 693
BspLI GGNNCC 5 cut(s) 147, 202, 220, 473, 712
BspQI GCTCTTC 1 cut(s) 912
BsrBI CCGCTC 1 cut(s) 457
BsrDI GCAATG 1 cut(s) 775
BsrFI RCCGGY 1 cut(s) 632
BsrI ACTGG 5 cut(s) 110, 147, 739, 833, 1049
BssAI RCCGGY 1 cut(s) 632
BssECI CCNNGG 2 cut(s) 391, 954
BssMI GATC 4 cut(s) 189, 794, 997, 1001
BssNI GRCGYC 1 cut(s) 305
BssSI CACGAG 1 cut(s) 428
Bst2BI CACGAG 1 cut(s) 428
Bst2UI CCWGG 2 cut(s) 392, 955
Bst4CI ACNGT 4 cut(s) 181, 246, 418, 806
Bst6I CTCTTC 1 cut(s) 912
BstACI GRCGYC 1 cut(s) 305
BstC8I GCNNGC 3 cut(s) 205, 319, 634
BstDEI CTNAG 7 cut(s) 6, 14, 368, 382, 715, 747, 854
BstF5I GGATG 1 cut(s) 237
BstH2I RGCGCY 2 cut(s) 338, 485
BstHHI GCGC 2 cut(s) 337, 484
BstKTI GATC 4 cut(s) 192, 797, 1000, 1004
BstMAI GTCTC 5 cut(s) 12, 358, 666, 786, 812
BstMBI GATC 4 cut(s) 189, 794, 997, 1001
BstMWI GCNNNNNNNGC 3 cut(s) 514, 544, 553
BstNI CCWGG 2 cut(s) 392, 955
BstSCI CCNGG 6 cut(s) 171, 215, 321, 390, 410, 953
BstSLI GKGCMC 1 cut(s) 222
BstV1I GCAGC 2 cut(s) 484, 969
BstV2I GAAGAC 3 cut(s) 260, 558, 956
BstX2I RGATCY 1 cut(s) 189
BstYI RGATCY 1 cut(s) 189
Bsu15I ATCGAT 1 cut(s) 1000
Bsu36I CCTNAGG 1 cut(s) 854
BsuI GTATCC 1 cut(s) 657
BsuRI GGCC 4 cut(s) 220, 636, 713, 1048
BsuTUI ATCGAT 1 cut(s) 1000
BtrI CACGTC 1 cut(s) 822
BtsCI GGATG 1 cut(s) 237
BtsI GCAGTG 1 cut(s) 675
BtsIMutI CAGTG 5 cut(s) 376, 390, 675, 744, 826
Cac8I GCNNGC 3 cut(s) 205, 319, 634
CfoI GCGC 2 cut(s) 337, 484
Cfr10I RCCGGY 1 cut(s) 632
Cfr13I GGNCC 7 cut(s) 146, 218, 219, 259, 408, 472, 711
ClaI ATCGAT 1 cut(s) 1000
CpoI CGGWCCG 2 cut(s) 259, 408
Csp6I GTAC 2 cut(s) 267, 437
CspI CGGWCCG 2 cut(s) 259, 408
CviAII CATG 4 cut(s) 97, 529, 707, 1015
CviQI GTAC 2 cut(s) 267, 437
DdeI CTNAG 7 cut(s) 6, 14, 368, 382, 715, 747, 854
DpnI GATC 4 cut(s) 191, 796, 999, 1003
DpnII GATC 4 cut(s) 189, 794, 997, 1001
EaeI YGGCCR 1 cut(s) 1046
Eam1104I CTCTTC 1 cut(s) 912
EarI CTCTTC 1 cut(s) 912
Ecl136II GAGCTC 3 cut(s) 169, 213, 427
Eco24I GRGCYC 4 cut(s) 171, 215, 222, 429
Eco47I GGWCC 4 cut(s) 146, 259, 408, 472
Eco47III AGCGCT 1 cut(s) 483
Eco53kI GAGCTC 3 cut(s) 169, 213, 427
Eco57I CTGAAG 1 cut(s) 278
Eco81I CCTNAGG 1 cut(s) 854
EcoICRI GAGCTC 3 cut(s) 169, 213, 427
EcoO109I RGGNCCY 1 cut(s) 711
EcoRII CCWGG 2 cut(s) 390, 953
EcoT22I ATGCAT 1 cut(s) 530
EcoT38I GRGCYC 4 cut(s) 171, 215, 222, 429
Esp3I CGTCTC 1 cut(s) 812
FaeI CATG 4 cut(s) 100, 532, 710, 1018
FaiI YATR 9 cut(s) 98, 530, 594, 708, 728, 779, 944, 1016, 1036
FalI AAGNNNNNCTT 2 cut(s) 621, 653
FaqI GGGAC 1 cut(s) 427
FatI CATG 4 cut(s) 96, 528, 706, 1014
FauI CCCGC 1 cut(s) 100
FblI GTMKAC 2 cut(s) 183, 302
Fnu4HI GCNGC 3 cut(s) 315, 498, 983
FokI GGATG 1 cut(s) 224
FriOI GRGCYC 4 cut(s) 171, 215, 222, 429
Fsp4HI GCNGC 3 cut(s) 315, 498, 983
FspBI CTAG 1 cut(s) 875
GlaI GCGC 2 cut(s) 336, 483
GluI GCNGC 3 cut(s) 315, 498, 983
GsaI CCCAGC 1 cut(s) 341
GsuI CTGGAG 1 cut(s) 22
HaeII RGCGCY 2 cut(s) 338, 485
HaeIII GGCC 4 cut(s) 220, 636, 713, 1048
HapII CCGG 9 cut(s) 172, 208, 216, 262, 322, 411, 475, 633, 694
HhaI GCGC 2 cut(s) 337, 484
Hin1I GRCGYC 1 cut(s) 305
Hin1II CATG 4 cut(s) 100, 532, 710, 1018
Hin6I GCGC 2 cut(s) 335, 482
HinP1I GCGC 2 cut(s) 335, 482
HincII GTYRAC 2 cut(s) 303, 802
HindII GTYRAC 2 cut(s) 303, 802
HindIII AAGCTT 1 cut(s) 597
HinfI GANTC 7 cut(s) 10, 161, 366, 380, 464, 749, 878
HpaII CCGG 9 cut(s) 172, 208, 216, 262, 322, 411, 475, 633, 694
HphI GGTGA 3 cut(s) 98, 223, 389
Hpy166II GTNNAC 3 cut(s) 184, 303, 802
Hpy188III TCNNGA 6 cut(s) 39, 328, 430, 475, 626, 694
Hpy8I GTNNAC 3 cut(s) 184, 303, 802
Hpy99I CGWCG 6 cut(s) 289, 292, 307, 310, 313, 355
HpyAV CCTTC 3 cut(s) 325, 439, 647
HpyCH4III ACNGT 4 cut(s) 181, 246, 418, 806
HpyCH4IV ACGT 2 cut(s) 305, 821
HpyCH4V TGCA 3 cut(s) 528, 757, 985
HpyF10VI GCNNNNNNNGC 3 cut(s) 514, 544, 553
HpyF3I CTNAG 7 cut(s) 6, 14, 368, 382, 715, 747, 854
HpySE526I ACGT 2 cut(s) 305, 821
Hsp92I GRCGYC 1 cut(s) 305
Hsp92II CATG 4 cut(s) 100, 532, 710, 1018
HspAI GCGC 2 cut(s) 335, 482
Kpn2I TCCGGA 2 cut(s) 474, 693
KroI GCCGGC 1 cut(s) 632
KroNI GCCGGC 1 cut(s) 634
Kzo9I GATC 4 cut(s) 189, 794, 997, 1001
LguI GCTCTTC 1 cut(s) 912
LmnI GCTCC 9 cut(s) 41, 166, 174, 200, 210, 218, 285, 424, 454
Lsp1109I GCAGC 2 cut(s) 484, 969
LweI GCATC 1 cut(s) 744
MaeI CTAG 1 cut(s) 875
MaeII ACGT 2 cut(s) 305, 821
MaeIII GTNAC 2 cut(s) 377, 1037
MalI GATC 4 cut(s) 191, 796, 999, 1003
MbiI CCGCTC 1 cut(s) 457
MboI GATC 4 cut(s) 189, 794, 997, 1001
MboII GAAGA 7 cut(s) 265, 558, 709, 755, 911, 929, 961
MflI RGATCY 1 cut(s) 189
MhlI GDGCHC 4 cut(s) 171, 215, 222, 429
MlsI TGGCCA 1 cut(s) 1048
MluCI AATT 3 cut(s) 66, 72, 78
MluNI TGGCCA 1 cut(s) 1048
MlyI GAGTC 4 cut(s) 155, 360, 374, 758
MmeI TCCRAC 3 cut(s) 112, 173, 178
Mox20I TGGCCA 1 cut(s) 1048
Mph1103I ATGCAT 1 cut(s) 530
MroI TCCGGA 2 cut(s) 474, 693
MroNI GCCGGC 1 cut(s) 632
MscI TGGCCA 1 cut(s) 1048
MslI CAYNNNNRTG 1 cut(s) 1033
Msp20I TGGCCA 1 cut(s) 1048
MspI CCGG 9 cut(s) 172, 208, 216, 262, 322, 411, 475, 633, 694
MspR9I CCNGG 6 cut(s) 173, 217, 323, 392, 412, 955
Mva1269I GAATGC 1 cut(s) 530
MvaI CCWGG 2 cut(s) 392, 955
MwoI GCNNNNNNNGC 3 cut(s) 514, 544, 553
NaeI GCCGGC 1 cut(s) 634
NciI CCSGG 4 cut(s) 173, 217, 323, 412
NdeII GATC 4 cut(s) 189, 794, 997, 1001
NgoMIV GCCGGC 1 cut(s) 632
NlaIII CATG 4 cut(s) 100, 532, 710, 1018
NlaIV GGNNCC 5 cut(s) 147, 202, 220, 473, 712
NmuCI GTSAC 1 cut(s) 377
NsiI ATGCAT 1 cut(s) 530
PciSI GCTCTTC 1 cut(s) 912
PcsI WCGNNNNNNNCGW 2 cut(s) 284, 314
PctI GAATGC 1 cut(s) 530
PdiI GCCGGC 1 cut(s) 634
PfeI GAWTC 3 cut(s) 10, 464, 878
PflFI GACNNNGTC 1 cut(s) 307
PfoI TCCNGGA 1 cut(s) 171
PkrI GCNGC 3 cut(s) 316, 499, 984
PleI GAGTC 4 cut(s) 155, 360, 374, 757
PpsI GAGTC 4 cut(s) 155, 360, 374, 757
Psp124BI GAGCTC 3 cut(s) 171, 215, 429
Psp6I CCWGG 2 cut(s) 390, 953
PspFI CCCAGC 1 cut(s) 337
PspGI CCWGG 2 cut(s) 390, 953
PspN4I GGNNCC 5 cut(s) 147, 202, 220, 473, 712
PspOMI GGGCCC 1 cut(s) 218
PspPI GGNCC 7 cut(s) 146, 218, 219, 259, 408, 472, 711
PsuI RGATCY 1 cut(s) 189
PsyI GACNNNGTC 1 cut(s) 307
RsaI GTAC 2 cut(s) 268, 438
RsaNI GTAC 2 cut(s) 267, 437
RseI CAYNNNNRTG 1 cut(s) 1033
Rsr2I CGGWCCG 2 cut(s) 259, 408
RsrII CGGWCCG 2 cut(s) 259, 408
SacI GAGCTC 3 cut(s) 171, 215, 429
SalI GTCGAC 1 cut(s) 301
SapI GCTCTTC 1 cut(s) 912
SatI GCNGC 3 cut(s) 315, 498, 983
Sau3AI GATC 4 cut(s) 189, 794, 997, 1001
Sau96I GGNCC 7 cut(s) 146, 218, 219, 259, 408, 472, 711
ScaI AGTACT 1 cut(s) 268
SchI GAGTC 4 cut(s) 155, 360, 374, 758
ScrFI CCNGG 6 cut(s) 173, 217, 323, 392, 412, 955
SduI GDGCHC 4 cut(s) 171, 215, 222, 429
SfaNI GCATC 1 cut(s) 744
SinI GGWCC 4 cut(s) 146, 259, 408, 472
SmiMI CAYNNNNRTG 1 cut(s) 1033
SmlI CTYRAG 2 cut(s) 542, 616
SmoI CTYRAG 2 cut(s) 542, 616
Sse9I AATT 3 cut(s) 66, 72, 78
SsiI CCGC 5 cut(s) 93, 314, 375, 406, 457
SspMI CTAG 1 cut(s) 875
SstI GAGCTC 3 cut(s) 171, 215, 429
StyD4I CCNGG 6 cut(s) 171, 215, 321, 390, 410, 953
TaaI ACNGT 4 cut(s) 181, 246, 418, 806
TaiI ACGT 2 cut(s) 308, 824
TaqI TCGA 6 cut(s) 302, 467, 627, 752, 936, 1000
TasI AATT 3 cut(s) 66, 72, 78
TatI WGTACW 2 cut(s) 266, 436
TauI GCSGC 1 cut(s) 317
TfiI GAWTC 3 cut(s) 10, 464, 878
TscAI CASTG 5 cut(s) 376, 390, 682, 751, 833
TseFI GTSAC 1 cut(s) 377
TseI GCWGC 2 cut(s) 497, 982
Tsp45I GTSAC 1 cut(s) 377
TspDTI ATGAA 6 cut(s) 458, 609, 695, 912, 979, 1017
TspGWI ACGGA 2 cut(s) 272, 834
TspRI CASTG 5 cut(s) 376, 390, 682, 751, 833
Tth111I GACNNNGTC 1 cut(s) 307
VpaK11BI GGWCC 4 cut(s) 146, 259, 408, 472
XcmI CCANNNNNNNNNTGG 1 cut(s) 833
XmiI GTMKAC 2 cut(s) 183, 302
XspI CTAG 1 cut(s) 875
ZraI GACGTC 1 cut(s) 306
ZrmI AGTACT 1 cut(s) 268
Zsp2I ATGCAT 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.