Prupe.1G090200_v2.0.a1

disease resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0029112
Physical Location & Seq
Forward (+)
6795330 .. 6797072
1743 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G090200.1

Sequence Viewer

Length: 432 bp
ATGGTTCTGAGCAATCAGCTATGTCGCAGGGCAGTGGAGGCGCAGAAGCTGCTGTACCATGGTTCTGAACTCCCACCAGGCCACATGAAGCTGCCAGAGAACGTGGAGTGGCTGAAGACGATCCGGCGGAAGATCCACGAGCATCCGGAGCTGGCGTTCGAGGAGCTGGACCGGTTGAACATGGATGGTGAATATCAAGAAGTTTACATAAGGAATGAAAAAAAAAAAAAAAAAAAAAAGGAGAGGGTGAAACTTGTTTTGAACGATAAGGAAGATGTTGATAAATTCACTCGGACTCTCCGAGTTATTCAGCTTGAGGATGCAGAGCAACGCCAAGTGACGGATCAAGCTGTCAAAATCTGGTTGGATGAGCTGGAAGAGATAAGTCCTCTGCTTTTCTTTATTCTATTTTATCTTCACAAGTTATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC

Protein Analysis

144

Amino Acids

17.23

Weight (kDa)

6.97

Isoelectric Point (pI)

39.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029112)

Species Orthologous Gene IDs
prunus_persica Prupe.1G090200_v2.0.a1 Prupe.3G187900_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 145
AciI CCGC 1 cut(s) 127
AclWI GGATC 3 cut(s) 115, 127, 351
AcsI RAATTY 1 cut(s) 284
AcuI CTGAAG 1 cut(s) 134
AfaI GTAC 1 cut(s) 56
AfiI CCNNNNNNNGG 1 cut(s) 340
AgeI ACCGGT 1 cut(s) 171
AgsI TTSAA 2 cut(s) 178, 262
AjnI CCWGG 1 cut(s) 76
AloI GAACNNNNNNTCC 2 cut(s) 140, 172
AluBI AGCT 8 cut(s) 19, 49, 91, 151, 166, 313, 350, 373
AluI AGCT 8 cut(s) 19, 49, 91, 151, 166, 313, 350, 373
AlwI GGATC 3 cut(s) 115, 127, 351
AlwNI CAGNNNCTG 1 cut(s) 49
Aor13HI TCCGGA 1 cut(s) 145
AoxI GGCC 1 cut(s) 79
ApeKI GCWGC 2 cut(s) 49, 91
ApoI RAATTY 1 cut(s) 284
AsiGI ACCGGT 1 cut(s) 171
AspLEI GCGC 1 cut(s) 43
AspS9I GGNCC 1 cut(s) 169
AsuHPI GGTGA 2 cut(s) 200, 259
AvaII GGWCC 1 cut(s) 169
BarI GAAGNNNNNNTAC 2 cut(s) 38, 70
BauI CACGAG 1 cut(s) 137
BbsI GAAGAC 1 cut(s) 122
BbvI GCAGC 2 cut(s) 36, 78
BccI CCATC 1 cut(s) 179
BciT130I CCWGG 1 cut(s) 78
BisI GCNGC 2 cut(s) 50, 92
BlsI GCNGC 2 cut(s) 51, 93
Bme1390I CCNGG 1 cut(s) 78
Bme18I GGWCC 1 cut(s) 169
BmgT120I GGNCC 1 cut(s) 169
BmrFI CCNGG 1 cut(s) 78
BmsI GCATC 2 cut(s) 151, 310
BpiI GAAGAC 1 cut(s) 122
BpuEI CTTGAG 1 cut(s) 335
BsaJI CCNNGG 1 cut(s) 58
BsaWI WCCGGW 2 cut(s) 145, 171
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bsc4I CCNNNNNNNGG 1 cut(s) 340
Bse118I RCCGGY 1 cut(s) 171
BseAI TCCGGA 1 cut(s) 145
BseBI CCWGG 1 cut(s) 78
BseDI CCNNGG 1 cut(s) 58
BseGI GGATG 4 cut(s) 142, 190, 325, 373
BseLI CCNNNNNNNGG 1 cut(s) 340
BseRI GAGGAG 1 cut(s) 176
BseXI GCAGC 2 cut(s) 36, 78
BshFI GGCC 1 cut(s) 81
BshTI ACCGGT 1 cut(s) 171
BsiSI CCGG 3 cut(s) 124, 146, 172
BslI CCNNNNNNNGG 1 cut(s) 340
BsnI GGCC 1 cut(s) 81
Bsp13I TCCGGA 1 cut(s) 145
Bsp143I GATC 3 cut(s) 120, 132, 343
Bsp19I CCATGG 1 cut(s) 58
BspACI CCGC 1 cut(s) 127
BspANI GGCC 1 cut(s) 81
BspEI TCCGGA 1 cut(s) 145
BspPI GGATC 3 cut(s) 115, 127, 351
BsrFI RCCGGY 1 cut(s) 171
BssAI RCCGGY 1 cut(s) 171
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 3 cut(s) 120, 132, 343
BssSI CACGAG 1 cut(s) 137
BssT1I CCWWGG 1 cut(s) 58
Bst2BI CACGAG 1 cut(s) 137
Bst2UI CCWGG 1 cut(s) 78
Bst6I CTCTTC 1 cut(s) 372
BstAPI GCANNNNNTGC 1 cut(s) 49
BstC8I GCNNGC 1 cut(s) 153
BstDEI CTNAG 1 cut(s) 8
BstDSI CCRYGG 1 cut(s) 58
BstF5I GGATG 4 cut(s) 142, 190, 325, 373
BstHHI GCGC 1 cut(s) 43
BstKTI GATC 3 cut(s) 123, 135, 346
BstMBI GATC 3 cut(s) 120, 132, 343
BstMWI GCNNNNNNNGC 3 cut(s) 38, 49, 148
BstNI CCWGG 1 cut(s) 78
BstSCI CCNGG 1 cut(s) 76
BstV1I GCAGC 2 cut(s) 36, 78
BstV2I GAAGAC 1 cut(s) 122
BstX2I RGATCY 1 cut(s) 132
BstYI RGATCY 1 cut(s) 132
BsuRI GGCC 1 cut(s) 81
BtgI CCRYGG 1 cut(s) 58
BtsCI GGATG 4 cut(s) 142, 190, 325, 373
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 39
Cac8I GCNNGC 1 cut(s) 153
CaiI CAGNNNCTG 1 cut(s) 49
CfoI GCGC 1 cut(s) 43
Cfr10I RCCGGY 1 cut(s) 171
Cfr13I GGNCC 1 cut(s) 169
Csp6I GTAC 1 cut(s) 55
CspAI ACCGGT 1 cut(s) 171
CviAII CATG 3 cut(s) 59, 85, 181
CviQI GTAC 1 cut(s) 55
DdeI CTNAG 1 cut(s) 8
DpnI GATC 3 cut(s) 122, 134, 345
DpnII GATC 3 cut(s) 120, 132, 343
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
EciI GGCGGA 1 cut(s) 142
Eco130I CCWWGG 1 cut(s) 58
Eco47I GGWCC 1 cut(s) 169
Eco57I CTGAAG 1 cut(s) 134
EcoRII CCWGG 1 cut(s) 76
EcoT14I CCWWGG 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 58
FaeI CATG 3 cut(s) 62, 88, 184
FaiI YATR 6 cut(s) 22, 60, 86, 182, 209, 427
FatI CATG 3 cut(s) 58, 84, 180
Fnu4HI GCNGC 2 cut(s) 50, 92
FokI GGATG 4 cut(s) 129, 197, 332, 380
Fsp4HI GCNGC 2 cut(s) 50, 92
GlaI GCGC 1 cut(s) 42
GluI GCNGC 2 cut(s) 50, 92
HaeIII GGCC 1 cut(s) 81
HapII CCGG 3 cut(s) 124, 146, 172
HhaI GCGC 1 cut(s) 43
Hin1II CATG 3 cut(s) 62, 88, 184
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HinfI GANTC 1 cut(s) 295
HpaII CCGG 3 cut(s) 124, 146, 172
HphI GGTGA 2 cut(s) 200, 259
Hpy166II GTNNAC 1 cut(s) 205
Hpy188I TCNGA 4 cut(s) 9, 67, 294, 302
Hpy188III TCNNGA 2 cut(s) 146, 197
Hpy8I GTNNAC 1 cut(s) 205
HpyCH4IV ACGT 1 cut(s) 102
HpyCH4V TGCA 1 cut(s) 323
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 49, 148
HpyF3I CTNAG 1 cut(s) 8
HpySE526I ACGT 1 cut(s) 102
Hsp92II CATG 3 cut(s) 62, 88, 184
HspAI GCGC 1 cut(s) 41
Kpn2I TCCGGA 1 cut(s) 145
Kzo9I GATC 3 cut(s) 120, 132, 343
LmnI GCTCC 2 cut(s) 148, 163
Lsp1109I GCAGC 2 cut(s) 36, 78
LweI GCATC 2 cut(s) 151, 310
MaeII ACGT 1 cut(s) 102
MaeIII GTNAC 1 cut(s) 337
MalI GATC 3 cut(s) 122, 134, 345
MboI GATC 3 cut(s) 120, 132, 343
MboII GAAGA 5 cut(s) 127, 142, 284, 389, 407
MflI RGATCY 1 cut(s) 132
MluCI AATT 1 cut(s) 284
MlyI GAGTC 1 cut(s) 289
MmeI TCCRAC 1 cut(s) 345
MnlI CCTC 5 cut(s) 31, 154, 237, 310, 399
MroI TCCGGA 1 cut(s) 145
MspI CCGG 3 cut(s) 124, 146, 172
MspR9I CCNGG 1 cut(s) 78
MvaI CCWGG 1 cut(s) 78
MwoI GCNNNNNNNGC 3 cut(s) 38, 49, 148
NcoI CCATGG 1 cut(s) 58
NdeII GATC 3 cut(s) 120, 132, 343
NlaIII CATG 3 cut(s) 62, 88, 184
NmuCI GTSAC 1 cut(s) 337
PcsI WCGNNNNNNNCGW 1 cut(s) 298
PinAI ACCGGT 1 cut(s) 171
PkrI GCNGC 2 cut(s) 51, 93
PleI GAGTC 1 cut(s) 289
PpsI GAGTC 1 cut(s) 289
Psp6I CCWGG 1 cut(s) 76
PspGI CCWGG 1 cut(s) 76
PspPI GGNCC 1 cut(s) 169
PstNI CAGNNNCTG 1 cut(s) 49
PsuI RGATCY 1 cut(s) 132
RsaI GTAC 1 cut(s) 56
RsaNI GTAC 1 cut(s) 55
SatI GCNGC 2 cut(s) 50, 92
Sau3AI GATC 3 cut(s) 120, 132, 343
Sau96I GGNCC 1 cut(s) 169
SchI GAGTC 1 cut(s) 289
ScrFI CCNGG 1 cut(s) 78
SetI ASST 9 cut(s) 21, 51, 93, 105, 153, 168, 315, 352, 375
SfaNI GCATC 2 cut(s) 151, 310
SinI GGWCC 1 cut(s) 169
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
Sse9I AATT 1 cut(s) 284
SsiI CCGC 1 cut(s) 127
StyD4I CCNGG 1 cut(s) 76
StyI CCWWGG 1 cut(s) 58
TaiI ACGT 1 cut(s) 105
TaqI TCGA 1 cut(s) 159
TasI AATT 1 cut(s) 284
TscAI CASTG 1 cut(s) 39
TseFI GTSAC 1 cut(s) 337
TseI GCWGC 2 cut(s) 49, 91
Tsp45I GTSAC 1 cut(s) 337
TspDTI ATGAA 2 cut(s) 101, 231
TspGWI ACGGA 1 cut(s) 356
TspRI CASTG 1 cut(s) 39
VpaK11BI GGWCC 1 cut(s) 169
XapI RAATTY 1 cut(s) 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.