Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0029112

Physical Location & Seq

Genomic Coordinates Reverse (-)

20146993 .. 20149295

Gene Structure 2303 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G187900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGTTCTGAGCAATCAGCTATGTCGCAGGGCAGTGGAGGCGCAGAAGCTGCTGTACCATGGTTCTGAACTCCCACCAGGCCACATGAAGCTGCCGGAGAACGTGGAGTGGCTGAAGACGATCCGGCGGAAGATCCACGAGCATCCGGAGCTGGCGTTCGAGGAGCTGGACCGGTTGAACATGGATGGTGAATATCAAGAAGTTTACATAAGGAATGAAAAAAAAAAAAAAAAAAGGAGAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002682 GO:0002831 GO:0003674 GO:0003824 GO:0006082 GO:0008150 GO:0008152 GO:0009694 GO:0009719 GO:0009725 GO:0009753 GO:0009987 GO:0010033 GO:0010112 GO:0010817 GO:0016787 GO:0016810 GO:0019752 GO:0031347 GO:0032101 GO:0032787 GO:0042221 GO:0042445 GO:0043436 GO:0043900 GO:0044237 GO:0044281 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0065007 GO:0065008 GO:0071704 GO:0080134 GO:1901700 GO:1990206

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

M20_dimer Peptidase_M20

Protein Analysis

82

Amino Acids

9.75

Weight (kDa)

9.37

Isoelectric Point (pI)

48.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0029112)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G090200_v2.0.a1 Prupe.3G187900_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	145
AciI	CCGC	1 cut(s)	127
AclWI	GGATC	2 cut(s)	115, 127
AcuI	CTGAAG	1 cut(s)	134
AfaI	GTAC	1 cut(s)	56
AgeI	ACCGGT	1 cut(s)	171
AgsI	TTSAA	1 cut(s)	178
AjnI	CCWGG	1 cut(s)	76
AloI	GAACNNNNNNTCC	2 cut(s)	140, 172
AluBI	AGCT	5 cut(s)	19, 49, 91, 151, 166
AluI	AGCT	5 cut(s)	19, 49, 91, 151, 166
AlwI	GGATC	2 cut(s)	115, 127
AlwNI	CAGNNNCTG	1 cut(s)	49
Aor13HI	TCCGGA	1 cut(s)	145
AoxI	GGCC	1 cut(s)	79
ApeKI	GCWGC	2 cut(s)	49, 91
AsiGI	ACCGGT	1 cut(s)	171
AspLEI	GCGC	1 cut(s)	43
AspS9I	GGNCC	1 cut(s)	169
AsuHPI	GGTGA	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	169
BarI	GAAGNNNNNNTAC	2 cut(s)	38, 70
BauI	CACGAG	1 cut(s)	137
BbsI	GAAGAC	1 cut(s)	122
BbvI	GCAGC	2 cut(s)	36, 78
BccI	CCATC	1 cut(s)	179
BciT130I	CCWGG	1 cut(s)	78
BisI	GCNGC	2 cut(s)	50, 92
BlsI	GCNGC	2 cut(s)	51, 93
Bme1390I	CCNGG	1 cut(s)	78
Bme18I	GGWCC	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	169
BmrFI	CCNGG	1 cut(s)	78
BmsI	GCATC	1 cut(s)	151
BpiI	GAAGAC	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	58
BsaWI	WCCGGW	2 cut(s)	145, 171
BsaXI	ACNNNNNCTCC	2 cut(s)	140, 170
Bse118I	RCCGGY	1 cut(s)	171
BseAI	TCCGGA	1 cut(s)	145
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	58
BseGI	GGATG	2 cut(s)	142, 190
BseRI	GAGGAG	1 cut(s)	176
BseXI	GCAGC	2 cut(s)	36, 78
BshFI	GGCC	1 cut(s)	81
BshTI	ACCGGT	1 cut(s)	171
BsiSI	CCGG	4 cut(s)	95, 124, 146, 172
BsnI	GGCC	1 cut(s)	81
Bsp13I	TCCGGA	1 cut(s)	145
Bsp143I	GATC	2 cut(s)	120, 132
Bsp19I	CCATGG	1 cut(s)	58
BspACI	CCGC	1 cut(s)	127
BspANI	GGCC	1 cut(s)	81
BspEI	TCCGGA	1 cut(s)	145
BspPI	GGATC	2 cut(s)	115, 127
BsrFI	RCCGGY	1 cut(s)	171
BssAI	RCCGGY	1 cut(s)	171
BssECI	CCNNGG	1 cut(s)	58
BssMI	GATC	2 cut(s)	120, 132
BssSI	CACGAG	1 cut(s)	137
BssT1I	CCWWGG	1 cut(s)	58
Bst2BI	CACGAG	1 cut(s)	137
Bst2UI	CCWGG	1 cut(s)	78
BstAPI	GCANNNNNTGC	1 cut(s)	49
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	1 cut(s)	8
BstDSI	CCRYGG	1 cut(s)	58
BstF5I	GGATG	2 cut(s)	142, 190
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	2 cut(s)	123, 135
BstMBI	GATC	2 cut(s)	120, 132
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 49, 148
BstNI	CCWGG	1 cut(s)	78
BstSCI	CCNGG	1 cut(s)	76
BstV1I	GCAGC	2 cut(s)	36, 78
BstV2I	GAAGAC	1 cut(s)	122
BstX2I	RGATCY	1 cut(s)	132
BstYI	RGATCY	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	81
BtgI	CCRYGG	1 cut(s)	58
BtsCI	GGATG	2 cut(s)	142, 190
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	1 cut(s)	153
CaiI	CAGNNNCTG	1 cut(s)	49
CfoI	GCGC	1 cut(s)	43
Cfr10I	RCCGGY	1 cut(s)	171
Cfr13I	GGNCC	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	55
CspAI	ACCGGT	1 cut(s)	171
CviAII	CATG	3 cut(s)	59, 85, 181
CviJI	RGCY	7 cut(s)	19, 49, 81, 91, 112, 151, 166
CviKI_1	RGCY	7 cut(s)	19, 49, 81, 91, 112, 151, 166
CviQI	GTAC	1 cut(s)	55
DdeI	CTNAG	1 cut(s)	8
DpnI	GATC	2 cut(s)	122, 134
DpnII	GATC	2 cut(s)	120, 132
EciI	GGCGGA	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	58
Eco47I	GGWCC	1 cut(s)	169
Eco57I	CTGAAG	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	58
FaeI	CATG	3 cut(s)	62, 88, 184
FaiI	YATR	5 cut(s)	22, 60, 86, 182, 209
FatI	CATG	3 cut(s)	58, 84, 180
Fnu4HI	GCNGC	2 cut(s)	50, 92
FokI	GGATG	2 cut(s)	129, 197
Fsp4HI	GCNGC	2 cut(s)	50, 92
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	2 cut(s)	50, 92
HaeIII	GGCC	1 cut(s)	81
HapII	CCGG	4 cut(s)	95, 124, 146, 172
HhaI	GCGC	1 cut(s)	43
Hin1II	CATG	3 cut(s)	62, 88, 184
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HpaII	CCGG	4 cut(s)	95, 124, 146, 172
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	2 cut(s)	9, 67
Hpy188III	TCNNGA	2 cut(s)	146, 197
Hpy8I	GTNNAC	1 cut(s)	205
HpyCH4IV	ACGT	1 cut(s)	102
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 49, 148
HpyF3I	CTNAG	1 cut(s)	8
HpySE526I	ACGT	1 cut(s)	102
Hsp92II	CATG	3 cut(s)	62, 88, 184
HspAI	GCGC	1 cut(s)	41
Kpn2I	TCCGGA	1 cut(s)	145
Kzo9I	GATC	2 cut(s)	120, 132
LmnI	GCTCC	2 cut(s)	148, 163
LpnPI	CCDG	9 cut(s)	13, 63, 90, 108, 137, 137, 152, 159, 185
Lsp1109I	GCAGC	2 cut(s)	36, 78
LweI	GCATC	1 cut(s)	151
MaeII	ACGT	1 cut(s)	102
MalI	GATC	2 cut(s)	122, 134
MboI	GATC	2 cut(s)	120, 132
MboII	GAAGA	2 cut(s)	127, 142
MflI	RGATCY	1 cut(s)	132
MnlI	CCTC	3 cut(s)	31, 154, 233
MroI	TCCGGA	1 cut(s)	145
MspI	CCGG	4 cut(s)	95, 124, 146, 172
MspR9I	CCNGG	1 cut(s)	78
MvaI	CCWGG	1 cut(s)	78
MwoI	GCNNNNNNNGC	3 cut(s)	38, 49, 148
NcoI	CCATGG	1 cut(s)	58
NdeII	GATC	2 cut(s)	120, 132
NlaIII	CATG	3 cut(s)	62, 88, 184
PinAI	ACCGGT	1 cut(s)	171
PkrI	GCNGC	2 cut(s)	51, 93
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspPI	GGNCC	1 cut(s)	169
PstNI	CAGNNNCTG	1 cut(s)	49
PsuI	RGATCY	1 cut(s)	132
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
SatI	GCNGC	2 cut(s)	50, 92
Sau3AI	GATC	2 cut(s)	120, 132
Sau96I	GGNCC	1 cut(s)	169
ScrFI	CCNGG	1 cut(s)	78
SetI	ASST	6 cut(s)	21, 51, 93, 105, 153, 168
SfaNI	GCATC	1 cut(s)	151
SinI	GGWCC	1 cut(s)	169
SsiI	CCGC	1 cut(s)	127
StyD4I	CCNGG	1 cut(s)	76
StyI	CCWWGG	1 cut(s)	58
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	1 cut(s)	159
TscAI	CASTG	1 cut(s)	39
TseI	GCWGC	2 cut(s)	49, 91
TspDTI	ATGAA	2 cut(s)	101, 231
TspRI	CASTG	1 cut(s)	39
VpaK11BI	GGWCC	1 cut(s)	169

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.