Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0024596

Physical Location & Seq

Genomic Coordinates Forward (+)

11107386 .. 11108647

Gene Structure 1262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G141200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGACCAACCTTGAGCGTATACGAGCAGCTGCTTACCGTTCTTTTTTGCGCCTCAAGCACATCCATTCCCTCACCACCTCCTCTCCATCCTCACGCCAGGAATATGATATTTCTTCTAGATTAGCAGGGACACCCCCTACTCAAATTCAGTCCTTTATGGACACTGGAAGTGACGTCATTTGGATAAAATGCTTACAAAGTTCCAATGTCTTTAACCCTGCAGAATCTTCCTCTTGCAGCTACTATTCGTGCGATTCCCTTTCTTGTAATGATCTAGGTGCAAGCGGCAACACTTGCGGAGGCAGAGATTTTCGTGAACCTTGCTACTATATAGGAGAATATGTAGATGGTTCCACAACAAGGGGAACTATTTCTCATGACAAGTTTGCATTTGAAGGCTCTGAGAGGGAGCTTGTAGATGTTGGACACTTGGATTTTGGCTGTTCCTACTACTCTTCATGGGAATTTGTGGGGAACCAAACAAACAGAAAAACAAAGTTCTCATACTGCATGGTGCTGCCAGACAATGAGGAATCAGTAAGCAGGATATATTTTGGATCAGAAAAACAAAGTTCTCATACTGCATGGTGCTGCCAAACTCCATTTGATCAAGAGGAAAAGGCCTACTACTATGTCACTCTGAATGAAATTAGCATTGGAGGGTTTGTTTTTGATTCAGGCACAACTTATACGATGCTTCGATCAGAAGCATATGACGTATTCGTCACGGCACTGCACAAAGCCATACGCTTGCTGCAAAGGAGAGATCCGATGGAATGGTTTGAGAAGTGTTTCGAGGGAAGTTTTCAGGACTTGGACTCTGCAGGACCAGATGTCACATTTTTTTTTTATGGTGTACAAGTCATGCTAACGAAGCAAACTACTTACATTGAAGTAGAGCAGGTACTTTGGTGCCTTGCCATTATCAGGTCCAATGAAAAGTTGTCCACATTTGGAAATATTCAGCAGCGGAACTATTTTGTTGGTTATGACGTTGAACAAGGAGTGGTTTCGTTTGCTCCGGTTGACTGTGCTACCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004190 GO:0005575 GO:0005576 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016787 GO:0019538 GO:0030163 GO:0043170 GO:0044238 GO:0070001 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04071 ko04138 ko04140 ko04142 ko04210 ko04915 ko05152 map04071 map04138 map04140 map04142 map04210 map04915 map05152

Pfam Domains

Protein Families

Asp TAXi_C TAXi_N

Protein Analysis

348

Amino Acids

39.41

Weight (kDa)

4.9

Isoelectric Point (pI)

52.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024596)

Species	Orthologous Gene IDs
prunus_persica	Prupe.1G141200_v2.0.a1 Prupe.1G141300_v2.0.a1 Prupe.1G141400_v2.0.a1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	722
AatII	GACGTC	1 cut(s)	177
Acc36I	ACCTGC	1 cut(s)	892
AccB1I	GGYRCC	1 cut(s)	912
AccI	GTMKAC	1 cut(s)	19
AciI	CCGC	3 cut(s)	285, 297, 970
AclWI	GGATC	2 cut(s)	565, 761
AcsI	RAATTY	2 cut(s)	144, 464
AcyI	GRCGYC	1 cut(s)	174
AfaI	GTAC	2 cut(s)	858, 906
AfiI	CCNNNNNNNGG	2 cut(s)	360, 927
AgsI	TTSAA	3 cut(s)	395, 893, 998
AhdI	GACNNNNNGTC	1 cut(s)	833
AjnI	CCWGG	1 cut(s)	96
AjuI	GAANNNNNNNTTGG	2 cut(s)	639, 671
AluBI	AGCT	3 cut(s)	29, 240, 412
AluI	AGCT	3 cut(s)	29, 240, 412
AlwI	GGATC	2 cut(s)	565, 761
AoxI	GGCC	1 cut(s)	621
ApeKI	GCWGC	7 cut(s)	26, 29, 237, 517, 591, 754, 967
ApoI	RAATTY	2 cut(s)	144, 464
Asp700I	GAANNNNTTC	2 cut(s)	370, 791
AspLEI	GCGC	1 cut(s)	51
AspS9I	GGNCC	2 cut(s)	827, 930
AsuHPI	GGTGA	1 cut(s)	64
AvaII	GGWCC	2 cut(s)	827, 930
BaeI	ACNNNNGTAYC	2 cut(s)	896, 929
BanI	GGYRCC	1 cut(s)	912
BbvI	GCAGC	7 cut(s)	16, 38, 249, 504, 578, 741, 979
BccI	CCATC	3 cut(s)	94, 341, 766
BceAI	ACGGC	1 cut(s)	744
BciT130I	CCWGG	1 cut(s)	98
BclI	TGATCA	1 cut(s)	607
BfaI	CTAG	2 cut(s)	117, 275
BfmI	CTRYAG	2 cut(s)	219, 822
BfuAI	ACCTGC	1 cut(s)	892
BisI	GCNGC	8 cut(s)	27, 30, 238, 286, 518, 592, 755, 968
BlsI	GCNGC	8 cut(s)	28, 31, 239, 287, 519, 593, 756, 969
Bme1390I	CCNGG	1 cut(s)	98
Bme18I	GGWCC	2 cut(s)	827, 930
BmeRI	GACNNNNNGTC	1 cut(s)	833
BmgT120I	GGNCC	2 cut(s)	827, 930
BmiI	GGNNCC	3 cut(s)	352, 476, 914
BmrFI	CCNGG	1 cut(s)	98
BmsI	GCATC	1 cut(s)	684
BpuEI	CTTGAG	2 cut(s)	32, 38
BsaHI	GRCGYC	1 cut(s)	174
BsaWI	WCCGGW	1 cut(s)	1021
BsaXI	ACNNNNNCTCC	6 cut(s)	67, 97, 327, 357, 651, 681
Bsc4I	CCNNNNNNNGG	2 cut(s)	360, 927
Bse1I	ACTGG	1 cut(s)	169
BseBI	CCWGG	1 cut(s)	98
BseGI	GGATG	2 cut(s)	60, 86
BseLI	CCNNNNNNNGG	2 cut(s)	360, 927
BseMII	CTCAG	1 cut(s)	393
BseNI	ACTGG	1 cut(s)	169
BseRI	GAGGAG	1 cut(s)	70
BseXI	GCAGC	7 cut(s)	16, 38, 249, 504, 578, 741, 979
BsgI	GTGCAG	1 cut(s)	719
BshFI	GGCC	1 cut(s)	623
BshNI	GGYRCC	1 cut(s)	912
BsiSI	CCGG	1 cut(s)	1022
BslFI	GGGAC	1 cut(s)	142
BslI	CCNNNNNNNGG	2 cut(s)	360, 927
BsmFI	GGGAC	1 cut(s)	142
BsnI	GGCC	1 cut(s)	623
Bsp1407I	TGTACA	1 cut(s)	856
Bsp143I	GATC	5 cut(s)	271, 557, 607, 701, 766
BspACI	CCGC	3 cut(s)	285, 297, 970
BspANI	GGCC	1 cut(s)	623
BspCNI	CTCAG	1 cut(s)	394
BspHI	TCATGA	1 cut(s)	376
BspLI	GGNNCC	3 cut(s)	352, 476, 914
BspMAI	CTGCAG	2 cut(s)	223, 826
BspMI	ACCTGC	1 cut(s)	892
BspPI	GGATC	2 cut(s)	565, 761
BspT107I	GGYRCC	1 cut(s)	912
BsrGI	TGTACA	1 cut(s)	856
BsrI	ACTGG	1 cut(s)	169
BssMI	GATC	5 cut(s)	271, 557, 607, 701, 766
BssNAI	GTATAC	1 cut(s)	20
BssNI	GRCGYC	1 cut(s)	174
Bst1107I	GTATAC	1 cut(s)	20
Bst2UI	CCWGG	1 cut(s)	98
Bst4CI	ACNGT	2 cut(s)	38, 1031
Bst6I	CTCTTC	1 cut(s)	460
BstACI	GRCGYC	1 cut(s)	174
BstAPI	GCANNNNNTGC	1 cut(s)	294
BstAUI	TGTACA	1 cut(s)	856
BstC8I	GCNNGC	2 cut(s)	283, 752
BstDEI	CTNAG	1 cut(s)	402
BstF5I	GGATG	2 cut(s)	60, 86
BstHHI	GCGC	1 cut(s)	51
BstKTI	GATC	5 cut(s)	274, 560, 610, 704, 769
BstMBI	GATC	5 cut(s)	271, 557, 607, 701, 766
BstMWI	GCNNNNNNNGC	3 cut(s)	55, 294, 874
BstNI	CCWGG	1 cut(s)	98
BstSCI	CCNGG	1 cut(s)	96
BstSFI	CTRYAG	2 cut(s)	219, 822
BstV1I	GCAGC	7 cut(s)	16, 38, 249, 504, 578, 741, 979
BstX2I	RGATCY	1 cut(s)	766
BstYI	RGATCY	1 cut(s)	766
BstZ17I	GTATAC	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	623
BtsCI	GGATG	2 cut(s)	60, 86
BtsI	GCAGTG	1 cut(s)	731
BtsIMutI	CAGTG	2 cut(s)	162, 731
BveI	ACCTGC	1 cut(s)	892
Cac8I	GCNNGC	2 cut(s)	283, 752
CciI	TCATGA	1 cut(s)	376
CfoI	GCGC	1 cut(s)	51
Cfr13I	GGNCC	2 cut(s)	827, 930
Csp6I	GTAC	2 cut(s)	857, 905
CviAII	CATG	5 cut(s)	377, 459, 511, 585, 865
CviJI	RGCY	7 cut(s)	29, 240, 399, 412, 441, 623, 743
CviKI_1	RGCY	7 cut(s)	29, 240, 399, 412, 441, 623, 743
CviQI	GTAC	2 cut(s)	857, 905
DdeI	CTNAG	1 cut(s)	402
DpnI	GATC	5 cut(s)	273, 559, 609, 703, 768
DpnII	GATC	5 cut(s)	271, 557, 607, 701, 766
DrdI	GACNNNNNNGTC	1 cut(s)	722
DriI	GACNNNNNGTC	1 cut(s)	833
DseDI	GACNNNNNNGTC	1 cut(s)	722
Eam1104I	CTCTTC	1 cut(s)	460
Eam1105I	GACNNNNNGTC	1 cut(s)	833
EarI	CTCTTC	1 cut(s)	460
Eco147I	AGGCCT	1 cut(s)	623
Eco47I	GGWCC	2 cut(s)	827, 930
EcoRII	CCWGG	1 cut(s)	96
FaeI	CATG	5 cut(s)	380, 462, 514, 588, 868
FaqI	GGGAC	1 cut(s)	142
FatI	CATG	5 cut(s)	376, 458, 510, 584, 864
FauNDI	CATATG	1 cut(s)	712
FbaI	TGATCA	1 cut(s)	607
FblI	GTMKAC	1 cut(s)	19
Fnu4HI	GCNGC	8 cut(s)	27, 30, 238, 286, 518, 592, 755, 968
FokI	GGATG	2 cut(s)	47, 73
Fsp4HI	GCNGC	8 cut(s)	27, 30, 238, 286, 518, 592, 755, 968
FspBI	CTAG	2 cut(s)	117, 275
GlaI	GCGC	1 cut(s)	50
GluI	GCNGC	8 cut(s)	27, 30, 238, 286, 518, 592, 755, 968
HaeIII	GGCC	1 cut(s)	623
HapII	CCGG	1 cut(s)	1022
HhaI	GCGC	1 cut(s)	51
Hin1I	GRCGYC	1 cut(s)	174
Hin1II	CATG	5 cut(s)	380, 462, 514, 588, 868
Hin6I	GCGC	1 cut(s)	49
HinP1I	GCGC	1 cut(s)	49
HincII	GTYRAC	1 cut(s)	1027
HindII	GTYRAC	1 cut(s)	1027
HinfI	GANTC	5 cut(s)	224, 254, 533, 674, 818
HpaII	CCGG	1 cut(s)	1022
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	5 cut(s)	20, 317, 857, 948, 1027
Hpy188I	TCNGA	6 cut(s)	403, 562, 642, 706, 771, 1043
Hpy188III	TCNNGA	5 cut(s)	117, 314, 377, 611, 809
Hpy8I	GTNNAC	5 cut(s)	20, 317, 857, 948, 1027
HpyAV	CCTTC	1 cut(s)	389
HpyCH4III	ACNGT	2 cut(s)	38, 1031
HpyCH4IV	ACGT	3 cut(s)	174, 717, 993
HpyCH4V	TGCA	9 cut(s)	221, 237, 281, 389, 510, 584, 736, 757, 824
HpyF10VI	GCNNNNNNNGC	3 cut(s)	55, 294, 874
HpyF3I	CTNAG	1 cut(s)	402
HpySE526I	ACGT	3 cut(s)	174, 717, 993
Hsp92I	GRCGYC	1 cut(s)	174
Hsp92II	CATG	5 cut(s)	380, 462, 514, 588, 868
HspAI	GCGC	1 cut(s)	49
Ksp22I	TGATCA	1 cut(s)	607
Kzo9I	GATC	5 cut(s)	271, 557, 607, 701, 766
LmnI	GCTCC	2 cut(s)	409, 1024
Lsp1109I	GCAGC	7 cut(s)	16, 38, 249, 504, 578, 741, 979
LweI	GCATC	1 cut(s)	684
MaeI	CTAG	2 cut(s)	117, 275
MaeII	ACGT	3 cut(s)	174, 717, 993
MaeIII	GTNAC	4 cut(s)	170, 634, 724, 835
MalI	GATC	5 cut(s)	273, 559, 609, 703, 768
MboI	GATC	5 cut(s)	271, 557, 607, 701, 766
MboII	GAAGA	3 cut(s)	105, 219, 447
MflI	RGATCY	1 cut(s)	766
MluCI	AATT	3 cut(s)	144, 464, 648
MlyI	GAGTC	1 cut(s)	812
MmeI	TCCRAC	1 cut(s)	403
MroXI	GAANNNNTTC	2 cut(s)	370, 791
MseI	TTAA	1 cut(s)	213
MspA1I	CMGCKG	2 cut(s)	29, 970
MspI	CCGG	1 cut(s)	1022
MspR9I	CCNGG	1 cut(s)	98
MvaI	CCWGG	1 cut(s)	98
MwoI	GCNNNNNNNGC	3 cut(s)	55, 294, 874
NdeI	CATATG	1 cut(s)	712
NdeII	GATC	5 cut(s)	271, 557, 607, 701, 766
NlaIII	CATG	5 cut(s)	380, 462, 514, 588, 868
NlaIV	GGNNCC	3 cut(s)	352, 476, 914
NmuCI	GTSAC	4 cut(s)	170, 634, 724, 835
PagI	TCATGA	1 cut(s)	376
PceI	AGGCCT	1 cut(s)	623
PdmI	GAANNNNTTC	2 cut(s)	370, 791
PfeI	GAWTC	4 cut(s)	224, 254, 533, 674
PkrI	GCNGC	8 cut(s)	28, 31, 239, 287, 519, 593, 756, 969
PleI	GAGTC	1 cut(s)	812
PpsI	GAGTC	1 cut(s)	812
Psp6I	CCWGG	1 cut(s)	96
PspGI	CCWGG	1 cut(s)	96
PspN4I	GGNNCC	3 cut(s)	352, 476, 914
PspPI	GGNCC	2 cut(s)	827, 930
PstI	CTGCAG	2 cut(s)	223, 826
PsuI	RGATCY	1 cut(s)	766
PvuII	CAGCTG	1 cut(s)	29
RsaI	GTAC	2 cut(s)	858, 906
RsaNI	GTAC	2 cut(s)	857, 905
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	8 cut(s)	27, 30, 238, 286, 518, 592, 755, 968
Sau3AI	GATC	5 cut(s)	271, 557, 607, 701, 766
Sau96I	GGNCC	2 cut(s)	827, 930
SchI	GAGTC	1 cut(s)	812
ScrFI	CCNGG	1 cut(s)	98
SfaNI	GCATC	1 cut(s)	684
SfcI	CTRYAG	2 cut(s)	219, 822
SinI	GGWCC	2 cut(s)	827, 930
SmlI	CTYRAG	2 cut(s)	11, 53
SmoI	CTYRAG	2 cut(s)	11, 53
Sse9I	AATT	3 cut(s)	144, 464, 648
SseBI	AGGCCT	1 cut(s)	623
SsiI	CCGC	3 cut(s)	285, 297, 970
SspI	AATATT	1 cut(s)	961
SspMI	CTAG	2 cut(s)	117, 275
StuI	AGGCCT	1 cut(s)	623
StyD4I	CCNGG	1 cut(s)	96
TaaI	ACNGT	2 cut(s)	38, 1031
TaiI	ACGT	3 cut(s)	177, 720, 996
TaqI	TCGA	2 cut(s)	700, 795
TasI	AATT	3 cut(s)	144, 464, 648
TatI	WGTACW	1 cut(s)	856
TauI	GCSGC	1 cut(s)	288
TfiI	GAWTC	4 cut(s)	224, 254, 533, 674
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	2 cut(s)	169, 738
TseFI	GTSAC	4 cut(s)	170, 634, 724, 835
TseI	GCWGC	7 cut(s)	26, 29, 237, 517, 591, 754, 967
Tsp45I	GTSAC	4 cut(s)	170, 634, 724, 835
TspDTI	ATGAA	3 cut(s)	447, 660, 951
TspRI	CASTG	2 cut(s)	169, 738
VpaK11BI	GGWCC	2 cut(s)	827, 930
XapI	RAATTY	2 cut(s)	144, 464
XbaI	TCTAGA	1 cut(s)	116
XmiI	GTMKAC	1 cut(s)	19
XmnI	GAANNNNTTC	2 cut(s)	370, 791
XspI	CTAG	2 cut(s)	117, 275
ZraI	GACGTC	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.