Prupe.1G157700_v2.0.a1

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0029167
Physical Location & Seq
Forward (+)
12521635 .. 12522600
966 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G157700.1

Sequence Viewer

Length: 807 bp
ATGGAGTCACTGCTTTTGGATGTCCCTTTCGAGTGCAGGTCATGGTACAAAGCAAGCCTCGATCCTTCATGCTGGCAATGTCTCATATTTCCGCGCTTTAATTATTATCGTTTCGACCATGTTCGGGGTTTTTACATAGACACTCGATTTTGGTTCTTAACTCTCTTTTATAGAAAATTTGTATATCGTTATCTAACTGGTAAGCTTCGTTTCTCCATGAATGGTTTCGTGAAGCTCGTTGTTAGTCGTAGCTGTGGAAATGCTACTTCTGTCAGCCTACCTGAATGTTCTGACCAAATACTGAAATATGTTGCAAATGCGTGTCCTGGCCTGAAAGCTTTATCTTTGCCTAGCAATTCGGTGTTACTAAAATCAAACATAATTATGGAGCTGACTGAAAAGTTGAAACACTTGGAGTCACTGTCTTTGGGAAATAGCAGAAATATTGCTGAAATCCTTTCACAGATCAGCCTTCACTGCAAGAACTTTCGTCGTTTGGAATTGCGTGATTGTTTAATAGGTGATGAAGAGGCATCGTCAATCATCAAATTGGTGCTTCATATTCAGTACTTAGTCTTGAGGTGTTCAAGAATTCGTCGTGGAAATTTTATCACATTACTTCAAGTCTGTAAGGAGCTTGTGTATTTGGATGCCAGTGATTGTCGAGATTTTGAAGAGGATTATGATGACATATTAAAGCTTGCTTCCCATATTGCTTATTTCAGCTGTGAGGGTTCCCAACTCTATGATTCTGAAGATAACCATGGTAGATTGATCTCTGATGGAGAGAGTTCTGATGATGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

269

Amino Acids

31.04

Weight (kDa)

6.1

Isoelectric Point (pI)

53.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029167)

Species Orthologous Gene IDs
prunus_persica Prupe.1G157700_v2.0.a1 Prupe.1G158000_v2.0.a1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 27
AccII CGCG 1 cut(s) 94
AciI CCGC 1 cut(s) 92
AclWI GGATC 1 cut(s) 56
AcsI RAATTY 3 cut(s) 176, 591, 604
AcuI CTGAAG 1 cut(s) 774
AfaI GTAC 2 cut(s) 47, 569
AfiI CCNNNNNNNGG 1 cut(s) 124
AgsI TTSAA 4 cut(s) 406, 588, 623, 674
AjnI CCWGG 1 cut(s) 325
AluBI AGCT 8 cut(s) 205, 235, 252, 338, 391, 637, 700, 726
AluI AGCT 8 cut(s) 205, 235, 252, 338, 391, 637, 700, 726
Alw26I GTCTC 1 cut(s) 86
AlwI GGATC 1 cut(s) 56
AoxI GGCC 1 cut(s) 328
ApoI RAATTY 3 cut(s) 176, 591, 604
Asp700I GAANNNNTTC 1 cut(s) 224
AspLEI GCGC 1 cut(s) 96
AsuHPI GGTGA 1 cut(s) 533
BccI CCATC 1 cut(s) 776
BciT130I CCWGG 1 cut(s) 327
BcoDI GTCTC 1 cut(s) 86
BfaI CTAG 1 cut(s) 351
BfuAI ACCTGC 1 cut(s) 27
BmcAI AGTACT 1 cut(s) 569
Bme1390I CCNGG 1 cut(s) 327
BmiI GGNNCC 1 cut(s) 736
BmrFI CCNGG 1 cut(s) 327
BmsI GCATC 2 cut(s) 542, 640
BpuEI CTTGAG 1 cut(s) 598
BsaJI CCNNGG 1 cut(s) 763
BsaXI ACNNNNNCTCC 4 cut(s) 407, 437, 626, 656
Bsc4I CCNNNNNNNGG 1 cut(s) 124
Bse1I ACTGG 2 cut(s) 202, 654
Bse3DI GCAATG 1 cut(s) 83
BseBI CCWGG 1 cut(s) 327
BseDI CCNNGG 1 cut(s) 763
BseGI GGATG 2 cut(s) 25, 655
BseLI CCNNNNNNNGG 1 cut(s) 124
BseMI GCAATG 1 cut(s) 83
BseNI ACTGG 2 cut(s) 202, 654
BsgI GTGCAG 1 cut(s) 55
Bsh1236I CGCG 1 cut(s) 94
BshFI GGCC 1 cut(s) 330
BslFI GGGAC 1 cut(s) 8
BslI CCNNNNNNNGG 1 cut(s) 124
BsmAI GTCTC 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 8
BsnI GGCC 1 cut(s) 330
Bsp143I GATC 3 cut(s) 61, 465, 774
Bsp19I CCATGG 1 cut(s) 763
BspACI CCGC 1 cut(s) 92
BspANI GGCC 1 cut(s) 330
BspFNI CGCG 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 736
BspMI ACCTGC 1 cut(s) 27
BspPI GGATC 1 cut(s) 56
BsrDI GCAATG 1 cut(s) 83
BsrI ACTGG 2 cut(s) 202, 654
BssECI CCNNGG 1 cut(s) 763
BssMI GATC 3 cut(s) 61, 465, 774
BssT1I CCWWGG 1 cut(s) 763
Bst2UI CCWGG 1 cut(s) 327
Bst4CI ACNGT 1 cut(s) 423
Bst6I CTCTTC 2 cut(s) 522, 669
BstC8I GCNNGC 3 cut(s) 55, 74, 702
BstDEI CTNAG 1 cut(s) 571
BstDSI CCRYGG 1 cut(s) 763
BstF5I GGATG 2 cut(s) 25, 655
BstFNI CGCG 1 cut(s) 94
BstHHI GCGC 1 cut(s) 96
BstKTI GATC 3 cut(s) 64, 468, 777
BstMAI GTCTC 1 cut(s) 86
BstMBI GATC 3 cut(s) 61, 465, 774
BstMWI GCNNNNNNNGC 1 cut(s) 477
BstNI CCWGG 1 cut(s) 327
BstSCI CCNGG 1 cut(s) 325
BstUI CGCG 1 cut(s) 94
BsuRI GGCC 1 cut(s) 330
BtgI CCRYGG 1 cut(s) 763
BtsCI GGATG 2 cut(s) 25, 655
BtsI GCAGTG 2 cut(s) 8, 475
BtsIMutI CAGTG 4 cut(s) 8, 419, 475, 661
BveI ACCTGC 1 cut(s) 27
Cac8I GCNNGC 3 cut(s) 55, 74, 702
CfoI GCGC 1 cut(s) 96
Csp6I GTAC 2 cut(s) 46, 568
CviAII CATG 5 cut(s) 42, 69, 119, 217, 764
CviQI GTAC 2 cut(s) 46, 568
DdeI CTNAG 1 cut(s) 571
DpnI GATC 3 cut(s) 63, 467, 776
DpnII GATC 3 cut(s) 61, 465, 774
Eam1104I CTCTTC 2 cut(s) 522, 669
EarI CTCTTC 2 cut(s) 522, 669
Eco130I CCWWGG 1 cut(s) 763
Eco57I CTGAAG 1 cut(s) 774
EcoRI GAATTC 1 cut(s) 591
EcoRII CCWGG 1 cut(s) 325
EcoT14I CCWWGG 1 cut(s) 763
ErhI CCWWGG 1 cut(s) 763
FaeI CATG 5 cut(s) 45, 72, 122, 220, 767
FaqI GGGAC 1 cut(s) 8
FatI CATG 5 cut(s) 41, 68, 118, 216, 763
FokI GGATG 2 cut(s) 32, 662
FspBI CTAG 1 cut(s) 351
GlaI GCGC 1 cut(s) 95
HaeIII GGCC 1 cut(s) 330
HhaI GCGC 1 cut(s) 96
Hin1II CATG 5 cut(s) 45, 72, 122, 220, 767
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
HindIII AAGCTT 3 cut(s) 203, 336, 698
HinfI GANTC 3 cut(s) 5, 416, 749
HphI GGTGA 1 cut(s) 533
Hpy188I TCNGA 4 cut(s) 292, 754, 781, 796
Hpy188III TCNNGA 4 cut(s) 229, 577, 588, 665
Hpy99I CGWCG 2 cut(s) 495, 600
HpyAV CCTTC 2 cut(s) 75, 482
HpyCH4III ACNGT 1 cut(s) 423
HpyCH4V TGCA 3 cut(s) 36, 314, 480
HpyF10VI GCNNNNNNNGC 1 cut(s) 477
HpyF3I CTNAG 1 cut(s) 571
Hsp92II CATG 5 cut(s) 45, 72, 122, 220, 767
HspAI GCGC 1 cut(s) 94
Kzo9I GATC 3 cut(s) 61, 465, 774
LmnI GCTCC 2 cut(s) 388, 634
LpnPI CCDG 8 cut(s) 22, 58, 183, 294, 312, 339, 344, 667
LweI GCATC 2 cut(s) 542, 640
MaeI CTAG 1 cut(s) 351
MaeIII GTNAC 3 cut(s) 6, 363, 417
MalI GATC 3 cut(s) 63, 467, 776
MboI GATC 3 cut(s) 61, 465, 774
MboII GAAGA 3 cut(s) 539, 686, 767
MluCI AATT 8 cut(s) 100, 176, 355, 381, 500, 548, 591, 604
MlyI GAGTC 2 cut(s) 14, 425
MnlI CCTC 5 cut(s) 68, 523, 573, 670, 724
MroXI GAANNNNTTC 1 cut(s) 224
MseI TTAA 4 cut(s) 99, 158, 515, 695
MslI CAYNNNNRTG 1 cut(s) 383
MspA1I CMGCKG 1 cut(s) 726
MspR9I CCNGG 1 cut(s) 327
MvaI CCWGG 1 cut(s) 327
MvnI CGCG 1 cut(s) 94
MwoI GCNNNNNNNGC 1 cut(s) 477
NcoI CCATGG 1 cut(s) 763
NdeII GATC 3 cut(s) 61, 465, 774
NlaIII CATG 5 cut(s) 45, 72, 122, 220, 767
NlaIV GGNNCC 1 cut(s) 736
NmuCI GTSAC 2 cut(s) 6, 417
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PdmI GAANNNNTTC 1 cut(s) 224
PfeI GAWTC 1 cut(s) 749
PleI GAGTC 2 cut(s) 13, 424
PpsI GAGTC 2 cut(s) 13, 424
Psp6I CCWGG 1 cut(s) 325
PspGI CCWGG 1 cut(s) 325
PspN4I GGNNCC 1 cut(s) 736
PvuII CAGCTG 1 cut(s) 726
RsaI GTAC 2 cut(s) 47, 569
RsaNI GTAC 2 cut(s) 46, 568
RseI CAYNNNNRTG 1 cut(s) 383
SaqAI TTAA 4 cut(s) 99, 158, 515, 695
Sau3AI GATC 3 cut(s) 61, 465, 774
ScaI AGTACT 1 cut(s) 569
SchI GAGTC 2 cut(s) 14, 425
ScrFI CCNGG 1 cut(s) 327
SfaNI GCATC 2 cut(s) 542, 640
SmiMI CAYNNNNRTG 1 cut(s) 383
SmlI CTYRAG 1 cut(s) 577
SmoI CTYRAG 1 cut(s) 577
Sse9I AATT 8 cut(s) 100, 176, 355, 381, 500, 548, 591, 604
SsiI CCGC 1 cut(s) 92
SspI AATATT 1 cut(s) 445
SspMI CTAG 1 cut(s) 351
StyD4I CCNGG 1 cut(s) 325
StyI CCWWGG 1 cut(s) 763
TaaI ACNGT 1 cut(s) 423
TaqI TCGA 5 cut(s) 30, 60, 114, 145, 664
TasI AATT 8 cut(s) 100, 176, 355, 381, 500, 548, 591, 604
TatI WGTACW 1 cut(s) 567
TfiI GAWTC 1 cut(s) 749
Tru1I TTAA 4 cut(s) 99, 158, 515, 695
Tru9I TTAA 4 cut(s) 99, 158, 515, 695
TscAI CASTG 4 cut(s) 15, 426, 482, 661
TseFI GTSAC 2 cut(s) 6, 417
Tsp45I GTSAC 2 cut(s) 6, 417
TspDTI ATGAA 4 cut(s) 57, 233, 540, 548
TspRI CASTG 4 cut(s) 15, 426, 482, 661
XapI RAATTY 3 cut(s) 176, 591, 604
XmnI GAANNNNTTC 1 cut(s) 224
XspI CTAG 1 cut(s) 351
ZrmI AGTACT 1 cut(s) 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.