Prupe.1G171400_v2.0.a1

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Forward (+)
14270856 .. 14274131
3276 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G171400.1_v2.0.a1.CDS.1

Sequence Viewer

Length: 327 bp
ATGATGAAGATCAAGATGAATAGATTTTGTGGGCCCCTTAGGGTTTTGTTGGCTCTCCAAAAAATCAGAAGGCTCTGGGCACTTACTCGAACTGGTCTTGCTCAAAACACGGCCTCGCTCAGGCTTAGATGGCAAAGGCAGGTTCTTGACGTCAAGAAGTTGAATTTTCTTTCTCCTGTTTTGGAACTCTTGGTAGCCTTGGTGAAGCTTTCGCTTGCTATTCTCCAACTTGTCTTCATCATCCCAGTCTTGCCGTTGATGATGAGCATCAGATTTTGTTGGCCCCGTAGGGTTTTGTTGACAAGAAGATGGAGGTGGTGCACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

109

Amino Acids

12.85

Weight (kDa)

12.0

Isoelectric Point (pI)

69.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024511)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 153
Acc36I ACCTGC 1 cut(s) 130
AcsI RAATTY 1 cut(s) 163
AcyI GRCGYC 1 cut(s) 150
AfiI CCNNNNNNNGG 1 cut(s) 120
AgsI TTSAA 1 cut(s) 163
AluBI AGCT 1 cut(s) 208
AluI AGCT 1 cut(s) 208
Alw21I GWGCWC 1 cut(s) 323
Alw44I GTGCAC 1 cut(s) 319
AoxI GGCC 3 cut(s) 32, 111, 281
ApaI GGGCCC 1 cut(s) 36
ApaLI GTGCAC 1 cut(s) 319
ApoI RAATTY 1 cut(s) 163
AspS9I GGNCC 3 cut(s) 32, 33, 282
AsuHPI GGTGA 1 cut(s) 214
AxyI CCTNAGG 1 cut(s) 38
BaeGI GKGCMC 3 cut(s) 36, 82, 323
BanII GRGCYC 1 cut(s) 36
BbsI GAAGAC 1 cut(s) 226
Bbv12I GWGCWC 1 cut(s) 323
BccI CCATC 2 cut(s) 123, 303
BceAI ACGGC 2 cut(s) 126, 238
BfuAI ACCTGC 1 cut(s) 130
BmgT120I GGNCC 3 cut(s) 32, 33, 282
BmiI GGNNCC 3 cut(s) 34, 35, 284
BmrI ACTGGG 1 cut(s) 239
BmsI GCATC 1 cut(s) 276
BmuI ACTGGG 1 cut(s) 239
BpiI GAAGAC 1 cut(s) 226
Bpu10I CCTNAGC 1 cut(s) 119
BsaBI GATNNNNATC 2 cut(s) 8, 266
BsaHI GRCGYC 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 198
Bsc4I CCNNNNNNNGG 1 cut(s) 120
Bse1I ACTGG 2 cut(s) 97, 245
Bse21I CCTNAGG 1 cut(s) 38
Bse8I GATNNNNATC 2 cut(s) 8, 266
BseDI CCNNGG 1 cut(s) 198
BseGI GGATG 1 cut(s) 240
BseJI GATNNNNATC 2 cut(s) 8, 266
BseLI CCNNNNNNNGG 1 cut(s) 120
BseMII CTCAG 1 cut(s) 133
BseNI ACTGG 2 cut(s) 97, 245
BseSI GKGCMC 3 cut(s) 36, 82, 323
BshFI GGCC 3 cut(s) 34, 113, 283
BsiHKAI GWGCWC 1 cut(s) 323
BslI CCNNNNNNNGG 1 cut(s) 120
BsnI GGCC 3 cut(s) 34, 113, 283
Bsp120I GGGCCC 1 cut(s) 32
Bsp1286I GDGCHC 3 cut(s) 36, 82, 323
Bsp143I GATC 1 cut(s) 9
BspANI GGCC 3 cut(s) 34, 113, 283
BspCNI CTCAG 1 cut(s) 132
BspLI GGNNCC 3 cut(s) 34, 35, 284
BspMI ACCTGC 1 cut(s) 130
BsrI ACTGG 2 cut(s) 97, 245
BssECI CCNNGG 1 cut(s) 198
BssMI GATC 1 cut(s) 9
BssNI GRCGYC 1 cut(s) 150
BssT1I CCWWGG 1 cut(s) 198
BstACI GRCGYC 1 cut(s) 150
BstC8I GCNNGC 1 cut(s) 216
BstDEI CTNAG 4 cut(s) 38, 119, 125, 324
BstENI CCTNNNNNAGG 1 cut(s) 118
BstF5I GGATG 1 cut(s) 240
BstKTI GATC 1 cut(s) 12
BstMBI GATC 1 cut(s) 9
BstMWI GCNNNNNNNGC 1 cut(s) 130
BstSLI GKGCMC 3 cut(s) 36, 82, 323
BstV2I GAAGAC 1 cut(s) 226
Bsu36I CCTNAGG 1 cut(s) 38
BsuRI GGCC 3 cut(s) 34, 113, 283
BtsCI GGATG 1 cut(s) 240
BveI ACCTGC 1 cut(s) 130
Cac8I GCNNGC 1 cut(s) 216
Cfr13I GGNCC 3 cut(s) 32, 33, 282
CviJI RGCY 8 cut(s) 34, 53, 73, 113, 124, 197, 208, 283
CviKI_1 RGCY 8 cut(s) 34, 53, 73, 113, 124, 197, 208, 283
DdeI CTNAG 4 cut(s) 38, 119, 125, 324
DpnI GATC 1 cut(s) 11
DpnII GATC 1 cut(s) 9
Eco130I CCWWGG 1 cut(s) 198
Eco24I GRGCYC 1 cut(s) 36
Eco81I CCTNAGG 1 cut(s) 38
EcoNI CCTNNNNNAGG 1 cut(s) 118
EcoO109I RGGNCCY 1 cut(s) 33
EcoT14I CCWWGG 1 cut(s) 198
EcoT38I GRGCYC 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 198
FokI GGATG 1 cut(s) 227
FriOI GRGCYC 1 cut(s) 36
HaeIII GGCC 3 cut(s) 34, 113, 283
Hin1I GRCGYC 1 cut(s) 150
HincII GTYRAC 1 cut(s) 300
HindII GTYRAC 1 cut(s) 300
HindIII AAGCTT 1 cut(s) 206
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 2 cut(s) 300, 321
Hpy188I TCNGA 2 cut(s) 68, 272
Hpy188III TCNNGA 3 cut(s) 13, 146, 154
Hpy8I GTNNAC 2 cut(s) 300, 321
HpyAV CCTTC 1 cut(s) 63
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 1 cut(s) 321
HpyF10VI GCNNNNNNNGC 1 cut(s) 130
HpyF3I CTNAG 4 cut(s) 38, 119, 125, 324
HpySE526I ACGT 1 cut(s) 150
Hsp92I GRCGYC 1 cut(s) 150
Kzo9I GATC 1 cut(s) 9
LpnPI CCDG 6 cut(s) 61, 78, 106, 125, 189, 258
LweI GCATC 1 cut(s) 276
MaeII ACGT 1 cut(s) 150
MalI GATC 1 cut(s) 11
MboI GATC 1 cut(s) 9
MboII GAAGA 3 cut(s) 19, 226, 318
MhlI GDGCHC 3 cut(s) 36, 82, 323
MluCI AATT 1 cut(s) 163
MmeI TCCRAC 1 cut(s) 250
MnlI CCTC 2 cut(s) 124, 306
MwoI GCNNNNNNNGC 1 cut(s) 130
NdeII GATC 1 cut(s) 9
NlaIV GGNNCC 3 cut(s) 34, 35, 284
PspN4I GGNNCC 3 cut(s) 34, 35, 284
PspOMI GGGCCC 1 cut(s) 32
PspPI GGNCC 3 cut(s) 32, 33, 282
Sau3AI GATC 1 cut(s) 9
Sau96I GGNCC 3 cut(s) 32, 33, 282
SduI GDGCHC 3 cut(s) 36, 82, 323
SetI ASST 4 cut(s) 144, 153, 210, 317
SfaNI GCATC 1 cut(s) 276
Sse9I AATT 1 cut(s) 163
StyI CCWWGG 1 cut(s) 198
TaiI ACGT 1 cut(s) 153
TaqI TCGA 1 cut(s) 88
TasI AATT 1 cut(s) 163
TspDTI ATGAA 3 cut(s) 20, 32, 226
VneI GTGCAC 1 cut(s) 319
XagI CCTNNNNNAGG 1 cut(s) 118
XapI RAATTY 1 cut(s) 163
ZraI GACGTC 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.